Prupe.6G165000_v2.0.a1

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011998
Physical Location & Seq
Reverse (-)
16201149 .. 16204761
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G165000.1

Sequence Viewer

Length: 390 bp
ATGGCACCAGCCAAGAAGGGCAAGGCCAAGGCCAAGGCCAACCCGGCCGAGTCAACTCAGCCCGTAAACCCCAACAACAATTTCCCAACCTCTATTCGGTACATACCTCCCTCCTCAGTCGCCATAACCATACACGCCAAGCCTGGTTCCAAAATCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGGGTGCAAATAGACGCGCCTGCGAAGGACGGGGAAGCTAATGCAGCCCTACTCGACTACATCAGCTCGGTTTTAGGGGTAAAAAGAAGGCAGGTTTCTATTGGTTCTGGCTCCAAATCAAGAGACAAGGTTGTTATTGTGGAGGAGATGACTCTACAAAGTGTTTTTGACATCCTGGACAAAGCTTCGAAGTCCACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

130

Amino Acids

13.57

Weight (kDa)

9.4

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 206
AcoI YGGCCR 1 cut(s) 45
AfaI GTAC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 96
AjnI CCWGG 2 cut(s) 142, 363
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 3 cut(s) 227, 255, 374
AluI AGCT 3 cut(s) 227, 255, 374
Alw26I GTCTC 1 cut(s) 306
AoxI GGCC 4 cut(s) 24, 30, 36, 45
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 208
AsuC2I CCSGG 1 cut(s) 44
AsuII TTCGAA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 144, 365
BcnI CCSGG 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 306
BfuAI ACCTGC 1 cut(s) 271
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 3 cut(s) 44, 144, 365
BmiI GGNNCC 3 cut(s) 6, 148, 301
BmrFI CCNGG 3 cut(s) 44, 144, 365
Bpu14I TTCGAA 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 27, 33
Bsc4I CCNNNNNNNGG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 144, 365
BseDI CCNNGG 2 cut(s) 27, 33
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 2 cut(s) 71, 129
BseRI GAGGAG 2 cut(s) 103, 347
BseX3I CGGCCG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 245
Bsh1236I CGCG 1 cut(s) 206
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 4 cut(s) 26, 32, 38, 47
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 306
BsnI GGCC 4 cut(s) 26, 32, 38, 47
Bsp119I TTCGAA 1 cut(s) 377
BspANI GGCC 4 cut(s) 26, 32, 38, 47
BspCNI CTCAG 2 cut(s) 70, 128
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 6, 148, 301
BspMI ACCTGC 1 cut(s) 271
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 27, 33
BssT1I CCWWGG 2 cut(s) 27, 33
Bst2UI CCWGG 2 cut(s) 144, 365
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 57, 115
BstF5I GGATG 1 cut(s) 360
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 1 cut(s) 208
BstMAI GTCTC 1 cut(s) 306
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 44, 233
BstNI CCWGG 2 cut(s) 144, 365
BstSCI CCNGG 3 cut(s) 42, 142, 363
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 245
BstZI CGGCCG 1 cut(s) 45
BsuRI GGCC 4 cut(s) 26, 32, 38, 47
BtsCI GGATG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 165, 181
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 1 cut(s) 208
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 100
CviQI GTAC 1 cut(s) 100
DdeI CTNAG 2 cut(s) 57, 115
EaeI YGGCCR 1 cut(s) 45
EagI CGGCCG 1 cut(s) 45
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 2 cut(s) 27, 33
Eco52I CGGCCG 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 142, 363
EcoT14I CCWWGG 2 cut(s) 27, 33
ErhI CCWWGG 2 cut(s) 27, 33
FaiI YATR 3 cut(s) 104, 125, 131
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 1 cut(s) 234
GlaI GCGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 4 cut(s) 26, 32, 38, 47
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 208
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 372
HinfI GANTC 2 cut(s) 50, 340
HpaII CCGG 1 cut(s) 44
Hpy166II GTNNAC 3 cut(s) 54, 67, 384
Hpy188III TCNNGA 1 cut(s) 309
Hpy8I GTNNAC 3 cut(s) 54, 67, 384
HpyAV CCTTC 3 cut(s) 10, 208, 270
HpyCH4V TGCA 2 cut(s) 196, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 233
HpyF3I CTNAG 2 cut(s) 57, 115
HspAI GCGC 1 cut(s) 206
LmnI GCTCC 1 cut(s) 305
LpnPI CCDG 9 cut(s) 21, 57, 129, 156, 222, 266, 282, 350, 377
Lsp1109I GCAGC 1 cut(s) 245
MluCI AATT 1 cut(s) 79
MlyI GAGTC 2 cut(s) 59, 334
MnlI CCTC 7 cut(s) 100, 117, 121, 124, 169, 175, 325
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 44, 144, 365
MvaI CCWGG 2 cut(s) 144, 365
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 44, 233
NciI CCSGG 1 cut(s) 44
NlaIV GGNNCC 3 cut(s) 6, 148, 301
NmeAIII GCCGAG 1 cut(s) 73
NspV TTCGAA 1 cut(s) 377
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 58, 334
PpsI GAGTC 2 cut(s) 58, 334
Psp6I CCWGG 2 cut(s) 142, 363
PspGI CCWGG 2 cut(s) 142, 363
PspN4I GGNNCC 3 cut(s) 6, 148, 301
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SatI GCNGC 1 cut(s) 234
SchI GAGTC 2 cut(s) 59, 334
ScrFI CCNGG 3 cut(s) 44, 144, 365
SetI ASST 8 cut(s) 92, 109, 229, 257, 285, 321, 376, 389
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 377
Sse9I AATT 1 cut(s) 79
StyD4I CCNGG 3 cut(s) 42, 142, 363
StyI CCWWGG 2 cut(s) 27, 33
TaqI TCGA 2 cut(s) 243, 377
TasI AATT 1 cut(s) 79
TscAI CASTG 2 cut(s) 172, 181
TseI GCWGC 1 cut(s) 233
TspRI CASTG 2 cut(s) 172, 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.