Rh2DG281600

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011998
Physical Location & Seq
Forward (+)
31949277 .. 31955649
6373 bp
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UTR
Exon/CDS
Intron
Rh2DG281600.1

Sequence Viewer

Length: 312 bp
ATGGCTCCAGCGAAGAAGGGAAAGGCCAAGGCCAAACCCGCCGCCGAGTCGACTCAGTCCTCCGCTACCAACAATTTCCCGGCGTGTATTCGCTCCGTACCTCCCTCCTCCGTCGCCATCACCATCCACGCCAAGCCTGGCTCCAAACTCGCCTCCATCACTGATTTCAGTGATGAGGCGTTGGGTGTGCAGATCGACGCCCCTGCAAAGGACGGCGAAGCTAACGCCGCCCTACTCGACTACATTAGTTCGCTTATTCATCAAAGCCCGGAGCTCCGCCGCATCAACCAGCACATTACGGCCCTGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

103

Amino Acids

10.73

Weight (kDa)

8.85

Isoelectric Point (pI)

64.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF167 PF02594 38 - 87 4.7e-11 Uncharacterised ACR, YggU family COG1872
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 50
AciI CCGC 6 cut(s) 39, 42, 63, 228, 277, 280
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 208
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 2 cut(s) 221, 274
AluI AGCT 2 cut(s) 221, 274
Alw21I GWGCWC 1 cut(s) 276
AoxI GGCC 3 cut(s) 24, 30, 300
AspS9I GGNCC 1 cut(s) 301
AsuC2I CCSGG 2 cut(s) 80, 269
AsuHPI GGTGA 1 cut(s) 112
BanII GRGCYC 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 276
BccI CCATC 3 cut(s) 125, 131, 164
BceAI ACGGC 1 cut(s) 229
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BciT130I CCWGG 1 cut(s) 138
BcnI CCSGG 2 cut(s) 80, 269
BisI GCNGC 3 cut(s) 42, 228, 280
BlsI GCNGC 3 cut(s) 43, 229, 281
Bme1390I CCNGG 3 cut(s) 80, 138, 269
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 6, 142
BmrFI CCNGG 3 cut(s) 80, 138, 269
BmsI GCATC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 80, 269
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 68
BseRI GAGGAG 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 209
BshFI GGCC 3 cut(s) 26, 32, 302
BsiHKAI GWGCWC 1 cut(s) 276
BsiSI CCGG 2 cut(s) 80, 269
BslI CCNNNNNNNGG 1 cut(s) 208
BsnI GGCC 3 cut(s) 26, 32, 302
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 6 cut(s) 39, 42, 63, 228, 277, 280
BspANI GGCC 3 cut(s) 26, 32, 302
BspCNI CTCAG 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 6, 142
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 138
BstACI GRCGYC 1 cut(s) 198
BstDEI CTNAG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 195
BstMBI GATC 1 cut(s) 192
BstMWI GCNNNNNNNGC 2 cut(s) 38, 227
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 3 cut(s) 78, 136, 267
BsuRI GGCC 3 cut(s) 26, 32, 302
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 159, 175
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 98
CviJI RGCY 9 cut(s) 5, 26, 32, 136, 141, 221, 267, 274, 302
CviKI_1 RGCY 9 cut(s) 5, 26, 32, 136, 141, 221, 267, 274, 302
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 54
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 27
FauI CCCGC 1 cut(s) 46
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 3 cut(s) 42, 228, 280
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 3 cut(s) 42, 228, 280
GluI GCNGC 3 cut(s) 42, 228, 280
HaeIII GGCC 3 cut(s) 26, 32, 302
HapII CCGG 2 cut(s) 80, 269
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 47, 52
HpaII CCGG 2 cut(s) 80, 269
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 51
Hpy99I CGWCG 2 cut(s) 116, 200
HpyAV CCTTC 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 190, 206
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 227
HpyF3I CTNAG 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 192
LmnI GCTCC 5 cut(s) 10, 98, 146, 271, 279
LpnPI CCDG 7 cut(s) 21, 93, 123, 150, 216, 282, 302
LweI GCATC 1 cut(s) 291
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 73
MlyI GAGTC 2 cut(s) 46, 56
MnlI CCTC 6 cut(s) 70, 111, 115, 118, 163, 169
MspI CCGG 2 cut(s) 80, 269
MspR9I CCNGG 3 cut(s) 80, 138, 269
MvaI CCWGG 1 cut(s) 138
MwoI GCNNNNNNNGC 2 cut(s) 38, 227
NciI CCSGG 2 cut(s) 80, 269
NdeII GATC 1 cut(s) 192
NlaIV GGNNCC 2 cut(s) 6, 142
NmeAIII GCCGAG 1 cut(s) 70
PflFI GACNNNGTC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 43, 229, 281
PleI GAGTC 2 cut(s) 46, 55
PpsI GAGTC 2 cut(s) 46, 55
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 6, 142
PspPI GGNCC 1 cut(s) 301
PsyI GACNNNGTC 1 cut(s) 55
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SacI GAGCTC 1 cut(s) 276
SalI GTCGAC 1 cut(s) 49
SatI GCNGC 3 cut(s) 42, 228, 280
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 2 cut(s) 46, 56
ScrFI CCNGG 3 cut(s) 80, 138, 269
SduI GDGCHC 1 cut(s) 276
SetI ASST 3 cut(s) 103, 223, 276
SfaNI GCATC 1 cut(s) 291
Sse9I AATT 1 cut(s) 73
SsiI CCGC 6 cut(s) 39, 42, 63, 228, 277, 280
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 78, 136, 267
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 3 cut(s) 50, 195, 237
TasI AATT 1 cut(s) 73
TauI GCSGC 3 cut(s) 44, 230, 282
TscAI CASTG 2 cut(s) 166, 175
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 2 cut(s) 85, 100
TspRI CASTG 2 cut(s) 166, 175
Tth111I GACNNNGTC 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.