Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008451.1

Orthogroup ID

OG0011998

Physical Location & Seq

Genomic Coordinates Forward (+)

25250 .. 26221

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008451.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggctccagcgaagaagggaaaggccaaggccaaacctgccgccgccgccgccgagtcgactcagtcctccgctaccaacaatttcccggcatgtattcgctccgtacctccctcctccgtcgccatcaccatccacgccaagcctggctccaaactcgcctccatcactgatttcagtgatgaggcgttgggtgtgcagatcgacgcccctgcaaaggacggcgaagctaacgccgccctactcgactacattagttcggatgctcgtgaggttagtttaaggataggttttatagacgaagatatgcaggttaagtttatggtggaaactggcaaagggcttggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF167

Protein Analysis

116

Amino Acids

11.93

Weight (kDa)

5.76

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49170
fragaria_vesca	FvH4_1g23360 FvH4_1g23360 FvH4_1g23360
malus_domestica	MD05G1015900.v1.1
prunus_persica	Prupe.6G164500_v2.0.a1 Prupe.6G165000_v2.0.a1 Prupe.6G165000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0118261
rosa_laevigata	RLG00000018406
rosa_multiflora	Rmu_sc0000373.1_g000022 Rmu_sc0008451.1_g000006
rosa_roxburghii	Rroxscaffold_2G00125040 Rroxscaffold_2G00125700
rosa_rugosa	Rorug02G0217400
rosa_samantha	Rh2AG273600 Rh2BG285800 Rh2DG281600
rosa_wichuraiana	Rw2G021780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	46, 301
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	6 cut(s)	42, 45, 48, 51, 72, 237
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	1 cut(s)	230
AluI	AGCT	1 cut(s)	230
AoxI	GGCC	2 cut(s)	24, 30
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	121
BauI	CACGAG	1 cut(s)	267
BccI	CCATC	3 cut(s)	134, 140, 173
BceAI	ACGGC	1 cut(s)	238
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	1 cut(s)	89
BfuAI	ACCTGC	2 cut(s)	46, 301
BisI	GCNGC	5 cut(s)	42, 45, 48, 51, 237
BlsI	GCNGC	5 cut(s)	43, 46, 49, 52, 238
Bme1390I	CCNGG	2 cut(s)	89, 147
BmiI	GGNNCC	2 cut(s)	6, 151
BmrFI	CCNGG	2 cut(s)	89, 147
BmsI	GCATC	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	89
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	337
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	132, 268
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	2 cut(s)	26, 32
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	217
BsnI	GGCC	2 cut(s)	26, 32
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	6 cut(s)	42, 45, 48, 51, 72, 237
BspANI	GGCC	2 cut(s)	26, 32
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	6, 151
BspMI	ACCTGC	2 cut(s)	46, 301
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	201
BssNI	GRCGYC	1 cut(s)	207
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	147
BstACI	GRCGYC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	132, 268
BstKTI	GATC	1 cut(s)	204
BstMBI	GATC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 50, 236
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	87, 145
BsuRI	GGCC	2 cut(s)	26, 32
BtsCI	GGATG	2 cut(s)	132, 268
BtsIMutI	CAGTG	2 cut(s)	168, 184
BveI	ACCTGC	2 cut(s)	46, 301
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	7 cut(s)	5, 26, 32, 145, 150, 230, 343
CviKI_1	RGCY	7 cut(s)	5, 26, 32, 145, 150, 230, 343
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	1 cut(s)	96
FaiI	YATR	4 cut(s)	94, 296, 308, 323
FatI	CATG	1 cut(s)	92
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	42, 45, 48, 51, 237
FokI	GGATG	2 cut(s)	119, 275
Fsp4HI	GCNGC	5 cut(s)	42, 45, 48, 51, 237
GluI	GCNGC	5 cut(s)	42, 45, 48, 51, 237
HaeIII	GGCC	2 cut(s)	26, 32
HapII	CCGG	1 cut(s)	89
HgaI	GACGC	1 cut(s)	215
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	56, 61
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	1 cut(s)	262
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	2 cut(s)	125, 209
HpyAV	CCTTC	1 cut(s)	10
HpyCH4V	TGCA	3 cut(s)	199, 215, 310
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 50, 236
HpyF3I	CTNAG	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	96
Kzo9I	GATC	1 cut(s)	201
LmnI	GCTCC	3 cut(s)	10, 107, 155
LpnPI	CCDG	8 cut(s)	21, 51, 102, 132, 159, 225, 296, 318
LweI	GCATC	1 cut(s)	253
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	25, 314
MluCI	AATT	1 cut(s)	82
MlyI	GAGTC	2 cut(s)	55, 65
MnlI	CCTC	7 cut(s)	79, 120, 124, 127, 172, 178, 265
MseI	TTAA	3 cut(s)	281, 315, 349
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	89, 147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 50, 236
NciI	CCSGG	1 cut(s)	89
NdeII	GATC	1 cut(s)	201
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	2 cut(s)	6, 151
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	5 cut(s)	43, 46, 49, 52, 238
PleI	GAGTC	2 cut(s)	55, 64
PpsI	GAGTC	2 cut(s)	55, 64
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	6, 151
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SalI	GTCGAC	1 cut(s)	58
SaqAI	TTAA	3 cut(s)	281, 315, 349
SatI	GCNGC	5 cut(s)	42, 45, 48, 51, 237
Sau3AI	GATC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	55, 65
ScrFI	CCNGG	2 cut(s)	89, 147
SetI	ASST	6 cut(s)	40, 112, 232, 276, 292, 315
SfaNI	GCATC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	82
SsiI	CCGC	6 cut(s)	42, 45, 48, 51, 72, 237
StyD4I	CCNGG	2 cut(s)	87, 145
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	3 cut(s)	59, 204, 246
TasI	AATT	1 cut(s)	82
TauI	GCSGC	5 cut(s)	44, 47, 50, 53, 239
Tru1I	TTAA	3 cut(s)	281, 315, 349
Tru9I	TTAA	3 cut(s)	281, 315, 349
TscAI	CASTG	2 cut(s)	175, 184
TspGWI	ACGGA	2 cut(s)	94, 109
TspRI	CASTG	2 cut(s)	175, 184
Tth111I	GACNNNGTC	1 cut(s)	64
XceI	RCATGY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	143
XmiI	GTMKAC	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.