E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02880 AT5G02880 |
| fragaria_vesca | FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 |
| malus_domestica | MD04G1104600.v1.1 MD12G1124500.v1.1 |
| prunus_persica | Prupe.6G241700_v2.0.a1 Prupe.6G241700_v2.0.a1 |
| pyrus_communis | pycom12g12310 |
| rosa_chinensis | RchiOBHm_Chr3g0468671 |
| rosa_laevigata | RLG00000024416 |
| rosa_multiflora | Rmu_sc0011538.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00412660 |
| rosa_rugosa | Rorug03G0096200 |
| rosa_samantha | Rh3AG145000 Rh3BG167500 Rh3DG166300 |
| rosa_wichuraiana | Rw3G013670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2080 |
| AatII | GACGTC | 1 cut(s) | 2335 |
| Acc36I | ACCTGC | 2 cut(s) | 2205, 3501 |
| AccB1I | GGYRCC | 2 cut(s) | 1349, 4417 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 160, 3487 |
| AccI | GTMKAC | 5 cut(s) | 637, 917, 2345, 2853, 2963 |
| AciI | CCGC | 6 cut(s) | 50, 452, 2207, 3226, 3454, 4136 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcyI | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| AfeI | AGCGCT | 1 cut(s) | 3801 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 160, 199, 760, 850, 3487, 3664, 3908, 4436 |
| AflII | CTTAAG | 1 cut(s) | 4538 |
| AflIII | ACRYGT | 1 cut(s) | 2348 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 3288, 3889 |
| AhlI | ACTAGT | 2 cut(s) | 2650, 3355 |
| AjnI | CCWGG | 4 cut(s) | 1632, 1864, 4197, 4432 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2811, 2843 |
| AleI | CACNNNNGTG | 3 cut(s) | 676, 764, 3750 |
| Alw21I | GWGCWC | 5 cut(s) | 378, 1089, 1412, 1527, 4293 |
| Alw26I | GTCTC | 7 cut(s) | 280, 341, 470, 473, 1769, 2095, 3099 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 581 |
| Aor51HI | AGCGCT | 1 cut(s) | 3801 |
| AoxI | GGCC | 5 cut(s) | 13, 552, 2465, 3550, 4079 |
| ApeKI | GCWGC | 8 cut(s) | 1098, 1374, 1785, 1913, 2315, 3338, 3476, 4543 |
| AseI | ATTAAT | 1 cut(s) | 2228 |
| Asp700I | GAANNNNTTC | 8 cut(s) | 1045, 1269, 1434, 1906, 2412, 3074, 4218, 4480 |
| AspLEI | GCGC | 1 cut(s) | 3802 |
| AspS9I | GGNCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| AsuC2I | CCSGG | 3 cut(s) | 275, 427, 4050 |
| AsuHPI | GGTGA | 8 cut(s) | 314, 370, 441, 778, 795, 1752, 2541, 3363 |
| AsuII | TTCGAA | 2 cut(s) | 3987, 4474 |
| AvaII | GGWCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| BaeGI | GKGCMC | 1 cut(s) | 4420 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BamHI | GGATCC | 2 cut(s) | 853, 1486 |
| BanI | GGYRCC | 2 cut(s) | 1349, 4417 |
| BanII | GRGCYC | 3 cut(s) | 1089, 1527, 4293 |
| BauI | CACGAG | 3 cut(s) | 476, 2511, 3590 |
| Bbv12I | GWGCWC | 5 cut(s) | 378, 1089, 1412, 1527, 4293 |
| BbvCI | CCTCAGC | 2 cut(s) | 858, 3663 |
| BbvI | GCAGC | 8 cut(s) | 1110, 1361, 1772, 1900, 2302, 3350, 3463, 4530 |
| BccI | CCATC | 9 cut(s) | 1160, 2560, 2671, 2677, 2744, 3382, 3481, 3731, 3803 |
| BceAI | ACGGC | 1 cut(s) | 2752 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 857, 891 |
| BciT130I | CCWGG | 4 cut(s) | 1634, 1866, 4199, 4434 |
| BciVI | GTATCC | 5 cut(s) | 2377, 2668, 3661, 3721, 3735 |
| BclI | TGATCA | 3 cut(s) | 304, 1957, 4297 |
| BcnI | CCSGG | 3 cut(s) | 275, 427, 4050 |
| BcoDI | GTCTC | 7 cut(s) | 280, 341, 470, 473, 1769, 2095, 3099 |
| BcuI | ACTAGT | 2 cut(s) | 2650, 3355 |
| BfmI | CTRYAG | 3 cut(s) | 2145, 2316, 4400 |
| BfoI | RGCGCY | 1 cut(s) | 3803 |
| BfrI | CTTAAG | 1 cut(s) | 4538 |
| BfuAI | ACCTGC | 2 cut(s) | 2205, 3501 |
| BfuI | GTATCC | 5 cut(s) | 2377, 2668, 3661, 3721, 3735 |
| BglII | AGATCT | 1 cut(s) | 293 |
| BisI | GCNGC | 8 cut(s) | 1099, 1375, 1786, 1914, 2316, 3339, 3477, 4544 |
| BlpI | GCTNAGC | 1 cut(s) | 627 |
| BlsI | GCNGC | 8 cut(s) | 1100, 1376, 1787, 1915, 2317, 3340, 3478, 4545 |
| BmcAI | AGTACT | 2 cut(s) | 2096, 3326 |
| Bme1390I | CCNGG | 7 cut(s) | 275, 427, 1634, 1866, 4050, 4199, 4434 |
| Bme18I | GGWCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 3288, 3889 |
| BmgT120I | GGNCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| BmiI | GGNNCC | 6 cut(s) | 855, 1351, 1488, 2598, 2766, 4419 |
| BmrFI | CCNGG | 7 cut(s) | 275, 427, 1634, 1866, 4050, 4199, 4434 |
| BmrI | ACTGGG | 2 cut(s) | 1655, 4422 |
| BmuI | ACTGGG | 2 cut(s) | 1655, 4422 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3408 |
| BpmI | CTGGAG | 7 cut(s) | 827, 1251, 1488, 2783, 2962, 3441, 4416 |
| Bpu10I | CCTNAGC | 3 cut(s) | 858, 3663, 3903 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 627 |
| Bpu14I | TTCGAA | 2 cut(s) | 3987, 4474 |
| BpuEI | CTTGAG | 2 cut(s) | 2119, 3539 |
| BpuMI | CCSGG | 3 cut(s) | 275, 427, 4050 |
| BsaAI | YACGTR | 1 cut(s) | 1839 |
| BsaBI | GATNNNNATC | 3 cut(s) | 252, 537, 2551 |
| BsaHI | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| BsaJI | CCNNGG | 8 cut(s) | 198, 759, 1632, 1864, 1865, 3553, 3710, 4315 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 641, 671 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 160, 199, 760, 850, 3487, 3664, 3908, 4436 |
| Bse118I | RCCGGY | 2 cut(s) | 46, 192 |
| Bse3DI | GCAATG | 4 cut(s) | 1171, 2438, 2663, 2719 |
| Bse8I | GATNNNNATC | 3 cut(s) | 252, 537, 2551 |
| BseBI | CCWGG | 4 cut(s) | 1634, 1866, 4199, 4434 |
| BseDI | CCNNGG | 8 cut(s) | 198, 759, 1632, 1864, 1865, 3553, 3710, 4315 |
| BseJI | GATNNNNATC | 3 cut(s) | 252, 537, 2551 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 160, 199, 760, 850, 3487, 3664, 3908, 4436 |
| BseMI | GCAATG | 4 cut(s) | 1171, 2438, 2663, 2719 |
| BseRI | GAGGAG | 1 cut(s) | 2031 |
| BseSI | GKGCMC | 1 cut(s) | 4420 |
| BseXI | GCAGC | 8 cut(s) | 1110, 1361, 1772, 1900, 2302, 3350, 3463, 4530 |
| BseYI | CCCAGC | 1 cut(s) | 689 |
| BshFI | GGCC | 5 cut(s) | 15, 554, 2467, 3552, 4081 |
| BshNI | GGYRCC | 2 cut(s) | 1349, 4417 |
| BsiHKAI | GWGCWC | 5 cut(s) | 378, 1089, 1412, 1527, 4293 |
| BsiSI | CCGG | 5 cut(s) | 47, 193, 274, 426, 4050 |
| BslFI | GGGAC | 1 cut(s) | 290 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 160, 199, 760, 850, 3487, 3664, 3908, 4436 |
| BsmAI | GTCTC | 7 cut(s) | 280, 341, 470, 473, 1769, 2095, 3099 |
| BsmBI | CGTCTC | 2 cut(s) | 280, 470 |
| BsmFI | GGGAC | 1 cut(s) | 290 |
| BsmI | GAATGC | 3 cut(s) | 800, 1447, 4480 |
| BsnI | GGCC | 5 cut(s) | 15, 554, 2467, 3552, 4081 |
| Bsp119I | TTCGAA | 2 cut(s) | 3987, 4474 |
| Bsp1286I | GDGCHC | 6 cut(s) | 378, 1089, 1412, 1527, 4293, 4420 |
| Bsp1407I | TGTACA | 2 cut(s) | 407, 3967 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 627 |
| Bsp19I | CCATGG | 2 cut(s) | 3710, 4315 |
| BspACI | CCGC | 6 cut(s) | 50, 452, 2207, 3226, 3454, 4136 |
| BspANI | GGCC | 5 cut(s) | 15, 554, 2467, 3552, 4081 |
| BspLI | GGNNCC | 6 cut(s) | 855, 1351, 1488, 2598, 2766, 4419 |
| BspMAI | CTGCAG | 2 cut(s) | 2320, 4404 |
| BspMI | ACCTGC | 2 cut(s) | 2205, 3501 |
| BspQI | GCTCTTC | 1 cut(s) | 4384 |
| BspT104I | TTCGAA | 2 cut(s) | 3987, 4474 |
| BspT107I | GGYRCC | 2 cut(s) | 1349, 4417 |
| BspTI | CTTAAG | 1 cut(s) | 4538 |
| BsrDI | GCAATG | 4 cut(s) | 1171, 2438, 2663, 2719 |
| BsrFI | RCCGGY | 2 cut(s) | 46, 192 |
| BsrGI | TGTACA | 2 cut(s) | 407, 3967 |
| BssAI | RCCGGY | 2 cut(s) | 46, 192 |
| BssECI | CCNNGG | 8 cut(s) | 198, 759, 1632, 1864, 1865, 3553, 3710, 4315 |
| BssNAI | GTATAC | 3 cut(s) | 2346, 2854, 2964 |
| BssNI | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| BssSI | CACGAG | 3 cut(s) | 476, 2511, 3590 |
| BssT1I | CCWWGG | 3 cut(s) | 3553, 3710, 4315 |
| Bst1107I | GTATAC | 3 cut(s) | 2346, 2854, 2964 |
| Bst2BI | CACGAG | 3 cut(s) | 476, 2511, 3590 |
| Bst2UI | CCWGG | 4 cut(s) | 1634, 1866, 4199, 4434 |
| Bst6I | CTCTTC | 4 cut(s) | 106, 339, 4384, 4561 |
| BstACI | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| BstAFI | CTTAAG | 1 cut(s) | 4538 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 581 |
| BstAUI | TGTACA | 2 cut(s) | 407, 3967 |
| BstBAI | YACGTR | 1 cut(s) | 1839 |
| BstBI | TTCGAA | 2 cut(s) | 3987, 4474 |
| BstC8I | GCNNGC | 9 cut(s) | 48, 60, 679, 1790, 2445, 2563, 3000, 3428, 3498 |
| BstDSI | CCRYGG | 3 cut(s) | 759, 3710, 4315 |
| BstEII | GGTNACC | 1 cut(s) | 1627 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4434 |
| BstH2I | RGCGCY | 1 cut(s) | 3803 |
| BstHHI | GCGC | 1 cut(s) | 3802 |
| BstMAI | GTCTC | 7 cut(s) | 280, 341, 470, 473, 1769, 2095, 3099 |
| BstNI | CCWGG | 4 cut(s) | 1634, 1866, 4199, 4434 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3408 |
| BstPI | GGTNACC | 1 cut(s) | 1627 |
| BstSCI | CCNGG | 7 cut(s) | 273, 425, 1632, 1864, 4048, 4197, 4432 |
| BstSFI | CTRYAG | 3 cut(s) | 2145, 2316, 4400 |
| BstSLI | GKGCMC | 1 cut(s) | 4420 |
| BstV1I | GCAGC | 8 cut(s) | 1110, 1361, 1772, 1900, 2302, 3350, 3463, 4530 |
| BstX2I | RGATCY | 7 cut(s) | 253, 293, 324, 853, 1486, 3823, 4024 |
| BstYI | RGATCY | 7 cut(s) | 253, 293, 324, 853, 1486, 3823, 4024 |
| BstZ17I | GTATAC | 3 cut(s) | 2346, 2854, 2964 |
| BsuI | GTATCC | 5 cut(s) | 2377, 2668, 3661, 3721, 3735 |
| BsuRI | GGCC | 5 cut(s) | 15, 554, 2467, 3552, 4081 |
| BtgI | CCRYGG | 3 cut(s) | 759, 3710, 4315 |
| BtsI | GCAGTG | 2 cut(s) | 638, 3917 |
| BveI | ACCTGC | 2 cut(s) | 2205, 3501 |
| Cac8I | GCNNGC | 9 cut(s) | 48, 60, 679, 1790, 2445, 2563, 3000, 3428, 3498 |
| CaiI | CAGNNNCTG | 1 cut(s) | 581 |
| CfoI | GCGC | 1 cut(s) | 3802 |
| Cfr10I | RCCGGY | 2 cut(s) | 46, 192 |
| Cfr13I | GGNCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| CpoI | CGGWCCG | 1 cut(s) | 195 |
| CseI | GACGC | 4 cut(s) | 174, 1567, 1979, 3398 |
| CsiI | ACCWGGT | 1 cut(s) | 4197 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1825, 1860 |
| CspI | CGGWCCG | 1 cut(s) | 195 |
| DraI | TTTAAA | 1 cut(s) | 1107 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2080 |
| DriI | GACNNNNNGTC | 2 cut(s) | 3288, 3889 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2080 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 4 cut(s) | 106, 339, 4384, 4561 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 3288, 3889 |
| EarI | CTCTTC | 4 cut(s) | 106, 339, 4384, 4561 |
| EciI | GGCGGA | 2 cut(s) | 65, 4151 |
| Ecl136II | GAGCTC | 3 cut(s) | 1087, 1525, 4291 |
| Eco130I | CCWWGG | 3 cut(s) | 3553, 3710, 4315 |
| Eco147I | AGGCCT | 1 cut(s) | 4081 |
| Eco24I | GRGCYC | 3 cut(s) | 1089, 1527, 4293 |
| Eco32I | GATATC | 2 cut(s) | 493, 2137 |
| Eco47I | GGWCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| Eco47III | AGCGCT | 1 cut(s) | 3801 |
| Eco53kI | GAGCTC | 3 cut(s) | 1087, 1525, 4291 |
| Eco91I | GGTNACC | 1 cut(s) | 1627 |
| EcoICRI | GAGCTC | 3 cut(s) | 1087, 1525, 4291 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4434 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1720 |
| EcoO65I | GGTNACC | 1 cut(s) | 1627 |
| EcoRI | GAATTC | 3 cut(s) | 121, 2055, 3569 |
| EcoRII | CCWGG | 4 cut(s) | 1632, 1864, 4197, 4432 |
| EcoRV | GATATC | 2 cut(s) | 493, 2137 |
| EcoT14I | CCWWGG | 3 cut(s) | 3553, 3710, 4315 |
| EcoT38I | GRGCYC | 3 cut(s) | 1089, 1527, 4293 |
| ErhI | CCWWGG | 3 cut(s) | 3553, 3710, 4315 |
| Esp3I | CGTCTC | 2 cut(s) | 280, 470 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 311, 343, 1087, 1119, 3013, 3045, 3065, 3097 |
| FaqI | GGGAC | 1 cut(s) | 290 |
| FauI | CCCGC | 1 cut(s) | 3219 |
| FauNDI | CATATG | 4 cut(s) | 117, 226, 1126, 2311 |
| FbaI | TGATCA | 3 cut(s) | 304, 1957, 4297 |
| FblI | GTMKAC | 5 cut(s) | 637, 917, 2345, 2853, 2963 |
| Fnu4HI | GCNGC | 8 cut(s) | 1099, 1375, 1786, 1914, 2316, 3339, 3477, 4544 |
| FriOI | GRGCYC | 3 cut(s) | 1089, 1527, 4293 |
| Fsp4HI | GCNGC | 8 cut(s) | 1099, 1375, 1786, 1914, 2316, 3339, 3477, 4544 |
| GlaI | GCGC | 1 cut(s) | 3801 |
| GluI | GCNGC | 8 cut(s) | 1099, 1375, 1786, 1914, 2316, 3339, 3477, 4544 |
| GsaI | CCCAGC | 1 cut(s) | 693 |
| GsuI | CTGGAG | 7 cut(s) | 827, 1251, 1488, 2783, 2962, 3441, 4416 |
| HaeII | RGCGCY | 1 cut(s) | 3803 |
| HaeIII | GGCC | 5 cut(s) | 15, 554, 2467, 3552, 4081 |
| HapII | CCGG | 5 cut(s) | 47, 193, 274, 426, 4050 |
| HgaI | GACGC | 4 cut(s) | 174, 1567, 1979, 3398 |
| HhaI | GCGC | 1 cut(s) | 3802 |
| Hin1I | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| Hin6I | GCGC | 1 cut(s) | 3800 |
| HinP1I | GCGC | 1 cut(s) | 3800 |
| HincII | GTYRAC | 5 cut(s) | 34, 1605, 2128, 2425, 4464 |
| HindII | GTYRAC | 5 cut(s) | 34, 1605, 2128, 2425, 4464 |
| HindIII | AAGCTT | 5 cut(s) | 1538, 1895, 2006, 3055, 4176 |
| HpaI | GTTAAC | 2 cut(s) | 2128, 4464 |
| HpaII | CCGG | 5 cut(s) | 47, 193, 274, 426, 4050 |
| HphI | GGTGA | 8 cut(s) | 314, 370, 441, 778, 795, 1752, 2541, 3363 |
| Hpy99I | CGWCG | 1 cut(s) | 2337 |
| HpyCH4IV | ACGT | 5 cut(s) | 1838, 2211, 2332, 2342, 4267 |
| HpySE526I | ACGT | 5 cut(s) | 1838, 2211, 2332, 2342, 4267 |
| Hsp92I | GRCGYC | 3 cut(s) | 1578, 2332, 3409 |
| HspAI | GCGC | 1 cut(s) | 3800 |
| KroI | GCCGGC | 1 cut(s) | 46 |
| KroNI | GCCGGC | 1 cut(s) | 48 |
| Ksp22I | TGATCA | 3 cut(s) | 304, 1957, 4297 |
| KspAI | GTTAAC | 2 cut(s) | 2128, 4464 |
| LguI | GCTCTTC | 1 cut(s) | 4384 |
| LmnI | GCTCC | 3 cut(s) | 664, 2764, 4296 |
| Lsp1109I | GCAGC | 8 cut(s) | 1110, 1361, 1772, 1900, 2302, 3350, 3463, 4530 |
| MabI | ACCWGGT | 1 cut(s) | 4197 |
| MaeII | ACGT | 5 cut(s) | 1838, 2211, 2332, 2342, 4267 |
| MaeIII | GTNAC | 9 cut(s) | 657, 964, 1627, 1736, 2238, 3401, 3587, 4102, 4408 |
| MfeI | CAATTG | 1 cut(s) | 1622 |
| MflI | RGATCY | 7 cut(s) | 253, 293, 324, 853, 1486, 3823, 4024 |
| MhlI | GDGCHC | 6 cut(s) | 378, 1089, 1412, 1527, 4293, 4420 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| MlyI | GAGTC | 7 cut(s) | 434, 919, 1069, 1553, 2854, 3825, 3989 |
| MmeI | TCCRAC | 2 cut(s) | 589, 3584 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| MroNI | GCCGGC | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 8 cut(s) | 1045, 1269, 1434, 1906, 2412, 3074, 4218, 4480 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 7 cut(s) | 676, 764, 1424, 1937, 2392, 2612, 3750 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspA1I | CMGCKG | 3 cut(s) | 1252, 2761, 3277 |
| MspCI | CTTAAG | 1 cut(s) | 4538 |
| MspI | CCGG | 5 cut(s) | 47, 193, 274, 426, 4050 |
| MspR9I | CCNGG | 7 cut(s) | 275, 427, 1634, 1866, 4050, 4199, 4434 |
| MunI | CAATTG | 1 cut(s) | 1622 |
| Mva1269I | GAATGC | 3 cut(s) | 800, 1447, 4480 |
| MvaI | CCWGG | 4 cut(s) | 1634, 1866, 4199, 4434 |
| NaeI | GCCGGC | 1 cut(s) | 48 |
| NciI | CCSGG | 3 cut(s) | 275, 427, 4050 |
| NcoI | CCATGG | 2 cut(s) | 3710, 4315 |
| NdeI | CATATG | 4 cut(s) | 117, 226, 1126, 2311 |
| NgoMIV | GCCGGC | 1 cut(s) | 46 |
| NlaIV | GGNNCC | 6 cut(s) | 855, 1351, 1488, 2598, 2766, 4419 |
| NmuCI | GTSAC | 5 cut(s) | 657, 964, 3401, 3587, 4408 |
| NspV | TTCGAA | 2 cut(s) | 3987, 4474 |
| OliI | CACNNNNGTG | 3 cut(s) | 676, 764, 3750 |
| PaeI | GCATGC | 4 cut(s) | 1792, 2447, 3430, 3500 |
| PasI | CCCWGGG | 1 cut(s) | 1865 |
| PceI | AGGCCT | 1 cut(s) | 4081 |
| PciI | ACATGT | 1 cut(s) | 2348 |
| PciSI | GCTCTTC | 1 cut(s) | 4384 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 474 |
| PctI | GAATGC | 3 cut(s) | 800, 1447, 4480 |
| PdiI | GCCGGC | 1 cut(s) | 48 |
| PdmI | GAANNNNTTC | 8 cut(s) | 1045, 1269, 1434, 1906, 2412, 3074, 4218, 4480 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 160, 3487 |
| PfoI | TCCNGGA | 3 cut(s) | 273, 425, 4432 |
| PkrI | GCNGC | 8 cut(s) | 1100, 1376, 1787, 1915, 2317, 3340, 3478, 4545 |
| PleI | GAGTC | 7 cut(s) | 434, 918, 1069, 1553, 2853, 3824, 3989 |
| PpsI | GAGTC | 7 cut(s) | 434, 918, 1069, 1553, 2853, 3824, 3989 |
| Ppu21I | YACGTR | 1 cut(s) | 1839 |
| PpuMI | RGGWCCY | 1 cut(s) | 1720 |
| PscI | ACATGT | 1 cut(s) | 2348 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3408 |
| PshBI | ATTAAT | 1 cut(s) | 2228 |
| Psp124BI | GAGCTC | 3 cut(s) | 1089, 1527, 4293 |
| Psp5II | RGGWCCY | 1 cut(s) | 1720 |
| Psp6I | CCWGG | 4 cut(s) | 1632, 1864, 4197, 4432 |
| PspEI | GGTNACC | 1 cut(s) | 1627 |
| PspFI | CCCAGC | 1 cut(s) | 689 |
| PspGI | CCWGG | 4 cut(s) | 1632, 1864, 4197, 4432 |
| PspN4I | GGNNCC | 6 cut(s) | 855, 1351, 1488, 2598, 2766, 4419 |
| PspPI | GGNCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| PspPPI | RGGWCCY | 1 cut(s) | 1720 |
| PstI | CTGCAG | 2 cut(s) | 2320, 4404 |
| PstNI | CAGNNNCTG | 1 cut(s) | 581 |
| PsuI | RGATCY | 7 cut(s) | 253, 293, 324, 853, 1486, 3823, 4024 |
| PvuII | CAGCTG | 3 cut(s) | 1252, 2761, 3277 |
| RseI | CAYNNNNRTG | 7 cut(s) | 676, 764, 1424, 1937, 2392, 2612, 3750 |
| Rsr2I | CGGWCCG | 1 cut(s) | 195 |
| RsrII | CGGWCCG | 1 cut(s) | 195 |
| SacI | GAGCTC | 3 cut(s) | 1089, 1527, 4293 |
| SapI | GCTCTTC | 1 cut(s) | 4384 |
| SatI | GCNGC | 8 cut(s) | 1099, 1375, 1786, 1914, 2316, 3339, 3477, 4544 |
| Sau96I | GGNCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| ScaI | AGTACT | 2 cut(s) | 2096, 3326 |
| SchI | GAGTC | 7 cut(s) | 434, 919, 1069, 1553, 2854, 3825, 3989 |
| ScrFI | CCNGG | 7 cut(s) | 275, 427, 1634, 1866, 4050, 4199, 4434 |
| SduI | GDGCHC | 6 cut(s) | 378, 1089, 1412, 1527, 4293, 4420 |
| SexAI | ACCWGGT | 1 cut(s) | 4197 |
| SfcI | CTRYAG | 3 cut(s) | 2145, 2316, 4400 |
| SfuI | TTCGAA | 2 cut(s) | 3987, 4474 |
| SinI | GGWCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 676, 764, 1424, 1937, 2392, 2612, 3750 |
| SmlI | CTYRAG | 3 cut(s) | 2098, 3518, 4538 |
| SmoI | CTYRAG | 3 cut(s) | 2098, 3518, 4538 |
| SpeI | ACTAGT | 2 cut(s) | 2650, 3355 |
| SphI | GCATGC | 4 cut(s) | 1792, 2447, 3430, 3500 |
| SseBI | AGGCCT | 1 cut(s) | 4081 |
| SsiI | CCGC | 6 cut(s) | 50, 452, 2207, 3226, 3454, 4136 |
| SstI | GAGCTC | 3 cut(s) | 1089, 1527, 4293 |
| StuI | AGGCCT | 1 cut(s) | 4081 |
| StyD4I | CCNGG | 7 cut(s) | 273, 425, 1632, 1864, 4048, 4197, 4432 |
| StyI | CCWWGG | 3 cut(s) | 3553, 3710, 4315 |
| TaiI | ACGT | 5 cut(s) | 1841, 2214, 2335, 2345, 4270 |
| TaqI | TCGA | 9 cut(s) | 95, 731, 867, 1646, 2545, 3433, 3987, 4311, 4474 |
| TaqII | GACCGA | 1 cut(s) | 3683 |
| TatI | WGTACW | 4 cut(s) | 407, 2094, 3324, 3967 |
| TseFI | GTSAC | 5 cut(s) | 657, 964, 3401, 3587, 4408 |
| TseI | GCWGC | 8 cut(s) | 1098, 1374, 1785, 1913, 2315, 3338, 3476, 4543 |
| Tsp45I | GTSAC | 5 cut(s) | 657, 964, 3401, 3587, 4408 |
| TspGWI | ACGGA | 5 cut(s) | 304, 1311, 1528, 2248, 2343 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 160, 3487 |
| Vha464I | CTTAAG | 1 cut(s) | 4538 |
| VpaK11BI | GGWCC | 8 cut(s) | 195, 1720, 1833, 2596, 3347, 3490, 3557, 4504 |
| VspI | ATTAAT | 1 cut(s) | 2228 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4434 |
| XmiI | GTMKAC | 5 cut(s) | 637, 917, 2345, 2853, 2963 |
| XmnI | GAANNNNTTC | 8 cut(s) | 1045, 1269, 1434, 1906, 2412, 3074, 4218, 4480 |
| ZraI | GACGTC | 1 cut(s) | 2333 |
| ZrmI | AGTACT | 2 cut(s) | 2096, 3326 |