E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02880 AT5G02880 |
| fragaria_vesca | FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 |
| malus_domestica | MD04G1104600.v1.1 MD12G1124500.v1.1 |
| prunus_persica | Prupe.6G241700_v2.0.a1 Prupe.6G241700_v2.0.a1 |
| pyrus_communis | pycom12g12310 |
| rosa_chinensis | RchiOBHm_Chr3g0468671 |
| rosa_laevigata | RLG00000024416 |
| rosa_multiflora | Rmu_sc0011538.1_g000007 |
| rosa_roxburghii | Rroxscaffold_6G00412660 |
| rosa_rugosa | Rorug03G0096200 |
| rosa_samantha | Rh3AG145000 Rh3BG167500 Rh3DG166300 |
| rosa_wichuraiana | Rw3G013670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3816 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| Acc16I | TGCGCA | 1 cut(s) | 3581 |
| Acc36I | ACCTGC | 1 cut(s) | 2109 |
| AccB1I | GGYRCC | 2 cut(s) | 1238, 4387 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 2465, 2558, 3454 |
| AccI | GTMKAC | 4 cut(s) | 547, 2820, 2930, 4222 |
| AccII | CGCG | 1 cut(s) | 398 |
| AciI | CCGC | 8 cut(s) | 199, 398, 2487, 3193, 3298, 3421, 3427, 4466 |
| AcoI | YGGCCR | 1 cut(s) | 1117 |
| AcuI | CTGAAG | 7 cut(s) | 723, 964, 1760, 1970, 3755, 4175, 4224 |
| AdeI | CACNNNGTG | 1 cut(s) | 2285 |
| AfaI | GTAC | 7 cut(s) | 319, 467, 1727, 2921, 3480, 3514, 3936 |
| AfeI | AGCGCT | 1 cut(s) | 3768 |
| AflII | CTTAAG | 2 cut(s) | 1325, 4508 |
| AflIII | ACRYGT | 3 cut(s) | 1821, 2922, 2949 |
| AgeI | ACCGGT | 1 cut(s) | 1980 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3856 |
| AhlI | ACTAGT | 1 cut(s) | 1513 |
| AjnI | CCWGG | 6 cut(s) | 276, 2572, 3546, 4018, 4167, 4402 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 1811, 1843, 2541, 2573, 2778, 2810, 3908, 3940 |
| Alw21I | GWGCWC | 6 cut(s) | 14, 44, 1301, 1843, 2251, 2863 |
| Alw26I | GTCTC | 8 cut(s) | 21, 163, 383, 1984, 2256, 2267, 3066, 3668 |
| Alw44I | GTGCAC | 1 cut(s) | 2859 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 277, 491 |
| Aor51HI | AGCGCT | 1 cut(s) | 3768 |
| AoxI | GGCC | 4 cut(s) | 1117, 2354, 3574, 3622 |
| ApaLI | GTGCAC | 1 cut(s) | 2859 |
| ApeKI | GCWGC | 8 cut(s) | 1008, 1570, 2012, 3206, 3305, 3443, 3460, 4513 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 341, 373 |
| AseI | ATTAAT | 1 cut(s) | 3245 |
| AsiGI | ACCGGT | 1 cut(s) | 1980 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1792 |
| AspLEI | GCGC | 4 cut(s) | 398, 3582, 3742, 3769 |
| AspS9I | GGNCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| AsuC2I | CCSGG | 1 cut(s) | 4048 |
| AsuII | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| AsuNHI | GCTAGC | 1 cut(s) | 4298 |
| AvaII | GGWCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| BaeGI | GKGCMC | 2 cut(s) | 2863, 4390 |
| BalI | TGGCCA | 1 cut(s) | 1119 |
| BamHI | GGATCC | 2 cut(s) | 763, 1375 |
| BanI | GGYRCC | 2 cut(s) | 1238, 4387 |
| BanII | GRGCYC | 2 cut(s) | 44, 2251 |
| BauI | CACGAG | 2 cut(s) | 4337, 4553 |
| BbsI | GAAGAC | 2 cut(s) | 819, 2646 |
| Bbv12I | GWGCWC | 6 cut(s) | 14, 44, 1301, 1843, 2251, 2863 |
| BbvCI | CCTCAGC | 1 cut(s) | 3630 |
| BbvI | GCAGC | 8 cut(s) | 1020, 1557, 1999, 3193, 3317, 3430, 3447, 4500 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 767, 801 |
| BciT130I | CCWGG | 6 cut(s) | 278, 2574, 3548, 4020, 4169, 4404 |
| BciVI | GTATCC | 4 cut(s) | 88, 1825, 3628, 4035 |
| BclI | TGATCA | 6 cut(s) | 61, 76, 85, 214, 4054, 4267 |
| BcnI | CCSGG | 1 cut(s) | 4048 |
| BcoDI | GTCTC | 8 cut(s) | 21, 163, 383, 1984, 2256, 2267, 3066, 3668 |
| BcuI | ACTAGT | 1 cut(s) | 1513 |
| BfmI | CTRYAG | 4 cut(s) | 2034, 2205, 2397, 2844 |
| BfoI | RGCGCY | 1 cut(s) | 3770 |
| BfrI | CTTAAG | 2 cut(s) | 1325, 4508 |
| BfuAI | ACCTGC | 1 cut(s) | 2109 |
| BfuI | GTATCC | 4 cut(s) | 88, 1825, 3628, 4035 |
| BisI | GCNGC | 8 cut(s) | 1009, 1571, 2013, 3207, 3306, 3444, 3461, 4514 |
| BlpI | GCTNAGC | 1 cut(s) | 537 |
| BlsI | GCNGC | 8 cut(s) | 1010, 1572, 2014, 3208, 3307, 3445, 3462, 4515 |
| BmcAI | AGTACT | 1 cut(s) | 1727 |
| Bme1390I | CCNGG | 7 cut(s) | 278, 2574, 3548, 4020, 4048, 4169, 4404 |
| Bme18I | GGWCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3856 |
| BmgT120I | GGNCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| BmiI | GGNNCC | 4 cut(s) | 765, 1240, 1377, 4389 |
| BmrFI | CCNGG | 7 cut(s) | 278, 2574, 3548, 4020, 4048, 4169, 4404 |
| BmrI | ACTGGG | 1 cut(s) | 4392 |
| BmtI | GCTAGC | 1 cut(s) | 4302 |
| BmuI | ACTGGG | 1 cut(s) | 4392 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1584 |
| BpiI | GAAGAC | 2 cut(s) | 819, 2646 |
| BpmI | CTGGAG | 5 cut(s) | 621, 1205, 1377, 1567, 4386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 3630 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 537 |
| Bpu14I | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| BpuEI | CTTGAG | 2 cut(s) | 2191, 3506 |
| BpuMI | CCSGG | 1 cut(s) | 4048 |
| BsaBI | GATNNNNATC | 1 cut(s) | 447 |
| BsaI | GGTCTC | 1 cut(s) | 3668 |
| BsaJI | CCNNGG | 6 cut(s) | 1827, 3546, 3677, 3838, 4019, 4285 |
| BsaWI | WCCGGW | 3 cut(s) | 209, 962, 1980 |
| BsaXI | ACNNNNNCTCC | 5 cut(s) | 29, 551, 581, 1825, 1855 |
| Bse118I | RCCGGY | 1 cut(s) | 1980 |
| Bse1I | ACTGG | 8 cut(s) | 1550, 1584, 2470, 3134, 3520, 3643, 3856, 4387 |
| Bse3DI | GCAATG | 5 cut(s) | 64, 432, 548, 1081, 2686 |
| Bse8I | GATNNNNATC | 1 cut(s) | 447 |
| BseBI | CCWGG | 6 cut(s) | 278, 2574, 3548, 4020, 4169, 4404 |
| BseDI | CCNNGG | 6 cut(s) | 1827, 3546, 3677, 3838, 4019, 4285 |
| BseJI | GATNNNNATC | 1 cut(s) | 447 |
| BseMI | GCAATG | 5 cut(s) | 64, 432, 548, 1081, 2686 |
| BseNI | ACTGG | 8 cut(s) | 1550, 1584, 2470, 3134, 3520, 3643, 3856, 4387 |
| BseRI | GAGGAG | 1 cut(s) | 126 |
| BseSI | GKGCMC | 2 cut(s) | 2863, 4390 |
| BseXI | GCAGC | 8 cut(s) | 1020, 1557, 1999, 3193, 3317, 3430, 3447, 4500 |
| Bsh1236I | CGCG | 1 cut(s) | 398 |
| BshFI | GGCC | 4 cut(s) | 1119, 2356, 3576, 3624 |
| BshNI | GGYRCC | 2 cut(s) | 1238, 4387 |
| BshTI | ACCGGT | 1 cut(s) | 1980 |
| BsiHKAI | GWGCWC | 6 cut(s) | 14, 44, 1301, 1843, 2251, 2863 |
| BsiSI | CCGG | 4 cut(s) | 210, 963, 1981, 4047 |
| BslFI | GGGAC | 3 cut(s) | 200, 898, 3721 |
| BsmAI | GTCTC | 8 cut(s) | 21, 163, 383, 1984, 2256, 2267, 3066, 3668 |
| BsmBI | CGTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 3 cut(s) | 200, 898, 3721 |
| BsmI | GAATGC | 3 cut(s) | 1336, 2423, 3429 |
| BsnI | GGCC | 4 cut(s) | 1119, 2356, 3576, 3624 |
| Bso31I | GGTCTC | 1 cut(s) | 3668 |
| Bsp119I | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| Bsp1286I | GDGCHC | 7 cut(s) | 14, 44, 1301, 1843, 2251, 2863, 4390 |
| Bsp1407I | TGTACA | 3 cut(s) | 317, 2919, 3934 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 537 |
| Bsp19I | CCATGG | 1 cut(s) | 4285 |
| BspACI | CCGC | 8 cut(s) | 199, 398, 2487, 3193, 3298, 3421, 3427, 4466 |
| BspANI | GGCC | 4 cut(s) | 1119, 2356, 3576, 3624 |
| BspFNI | CGCG | 1 cut(s) | 398 |
| BspHI | TCATGA | 2 cut(s) | 73, 3556 |
| BspLI | GGNNCC | 4 cut(s) | 765, 1240, 1377, 4389 |
| BspMI | ACCTGC | 1 cut(s) | 2109 |
| BspOI | GCTAGC | 1 cut(s) | 4302 |
| BspQI | GCTCTTC | 1 cut(s) | 4354 |
| BspT104I | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| BspT107I | GGYRCC | 2 cut(s) | 1238, 4387 |
| BspTI | CTTAAG | 2 cut(s) | 1325, 4508 |
| BspTNI | GGTCTC | 1 cut(s) | 3668 |
| BsrDI | GCAATG | 5 cut(s) | 64, 432, 548, 1081, 2686 |
| BsrFI | RCCGGY | 1 cut(s) | 1980 |
| BsrGI | TGTACA | 3 cut(s) | 317, 2919, 3934 |
| BsrI | ACTGG | 8 cut(s) | 1550, 1584, 2470, 3134, 3520, 3643, 3856, 4387 |
| BssAI | RCCGGY | 1 cut(s) | 1980 |
| BssECI | CCNNGG | 6 cut(s) | 1827, 3546, 3677, 3838, 4019, 4285 |
| BssNAI | GTATAC | 2 cut(s) | 2821, 2931 |
| BssSI | CACGAG | 2 cut(s) | 4337, 4553 |
| BssT1I | CCWWGG | 3 cut(s) | 1827, 3838, 4285 |
| Bst1107I | GTATAC | 2 cut(s) | 2821, 2931 |
| Bst2BI | CACGAG | 2 cut(s) | 4337, 4553 |
| Bst2UI | CCWGG | 6 cut(s) | 278, 2574, 3548, 4020, 4169, 4404 |
| Bst6I | CTCTTC | 5 cut(s) | 1851, 1900, 2265, 4354, 4531 |
| BstAFI | CTTAAG | 2 cut(s) | 1325, 4508 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 491 |
| BstAUI | TGTACA | 3 cut(s) | 317, 2919, 3934 |
| BstBI | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| BstC8I | GCNNGC | 7 cut(s) | 589, 1676, 2437, 2967, 3465, 3578, 4300 |
| BstDSI | CCRYGG | 2 cut(s) | 3677, 4285 |
| BstEII | GGTNACC | 1 cut(s) | 2096 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 702, 4404 |
| BstFNI | CGCG | 1 cut(s) | 398 |
| BstH2I | RGCGCY | 1 cut(s) | 3770 |
| BstHHI | GCGC | 4 cut(s) | 398, 3582, 3742, 3769 |
| BstMAI | GTCTC | 8 cut(s) | 21, 163, 383, 1984, 2256, 2267, 3066, 3668 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 422, 491, 611, 897, 1263, 1484, 3390 |
| BstNI | CCWGG | 6 cut(s) | 278, 2574, 3548, 4020, 4169, 4404 |
| BstNSI | RCATGY | 9 cut(s) | 591, 1312, 1678, 1715, 1825, 2485, 2953, 3467, 3586 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1584 |
| BstPI | GGTNACC | 1 cut(s) | 2096 |
| BstSCI | CCNGG | 7 cut(s) | 276, 2572, 3546, 4018, 4046, 4167, 4402 |
| BstSFI | CTRYAG | 4 cut(s) | 2034, 2205, 2397, 2844 |
| BstSLI | GKGCMC | 2 cut(s) | 2863, 4390 |
| BstUI | CGCG | 1 cut(s) | 398 |
| BstV1I | GCAGC | 8 cut(s) | 1020, 1557, 1999, 3193, 3317, 3430, 3447, 4500 |
| BstV2I | GAAGAC | 2 cut(s) | 819, 2646 |
| BstX2I | RGATCY | 6 cut(s) | 763, 1375, 2083, 3602, 3790, 3994 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 4081, 4141 |
| BstYI | RGATCY | 6 cut(s) | 763, 1375, 2083, 3602, 3790, 3994 |
| BstZ17I | GTATAC | 2 cut(s) | 2821, 2931 |
| BsuI | GTATCC | 4 cut(s) | 88, 1825, 3628, 4035 |
| BsuRI | GGCC | 4 cut(s) | 1119, 2356, 3576, 3624 |
| BtgI | CCRYGG | 2 cut(s) | 3677, 4285 |
| BtgZI | GCGATG | 1 cut(s) | 456 |
| BtsI | GCAGTG | 2 cut(s) | 2226, 4293 |
| BveI | ACCTGC | 1 cut(s) | 2109 |
| Cac8I | GCNNGC | 7 cut(s) | 589, 1676, 2437, 2967, 3465, 3578, 4300 |
| CaiI | CAGNNNCTG | 2 cut(s) | 277, 491 |
| CciI | TCATGA | 2 cut(s) | 73, 3556 |
| CfoI | GCGC | 4 cut(s) | 398, 3582, 3742, 3769 |
| Cfr10I | RCCGGY | 1 cut(s) | 1980 |
| Cfr13I | GGNCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| CseI | GACGC | 2 cut(s) | 3198, 4208 |
| CsiI | ACCWGGT | 2 cut(s) | 276, 4167 |
| Csp6I | GTAC | 7 cut(s) | 318, 466, 1726, 2920, 3479, 3513, 3935 |
| CspAI | ACCGGT | 1 cut(s) | 1980 |
| CviQI | GTAC | 7 cut(s) | 318, 466, 1726, 2920, 3479, 3513, 3935 |
| DraIII | CACNNNGTG | 1 cut(s) | 2285 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3856 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1969 |
| EaeI | YGGCCR | 1 cut(s) | 1117 |
| Eam1104I | CTCTTC | 5 cut(s) | 1851, 1900, 2265, 4354, 4531 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3856 |
| EarI | CTCTTC | 5 cut(s) | 1851, 1900, 2265, 4354, 4531 |
| EciI | GGCGGA | 2 cut(s) | 214, 4481 |
| Ecl136II | GAGCTC | 2 cut(s) | 42, 2249 |
| Eco130I | CCWWGG | 3 cut(s) | 1827, 3838, 4285 |
| Eco24I | GRGCYC | 2 cut(s) | 44, 2251 |
| Eco31I | GGTCTC | 1 cut(s) | 3668 |
| Eco32I | GATATC | 2 cut(s) | 403, 2026 |
| Eco47I | GGWCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| Eco47III | AGCGCT | 1 cut(s) | 3768 |
| Eco53kI | GAGCTC | 2 cut(s) | 42, 2249 |
| Eco57I | CTGAAG | 7 cut(s) | 723, 964, 1760, 1970, 3755, 4175, 4224 |
| Eco91I | GGTNACC | 1 cut(s) | 2096 |
| EcoICRI | GAGCTC | 2 cut(s) | 42, 2249 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 702, 4404 |
| EcoO109I | RGGNCCY | 2 cut(s) | 707, 3835 |
| EcoO65I | GGTNACC | 1 cut(s) | 2096 |
| EcoRI | GAATTC | 1 cut(s) | 1944 |
| EcoRII | CCWGG | 6 cut(s) | 276, 2572, 3546, 4018, 4167, 4402 |
| EcoRV | GATATC | 2 cut(s) | 403, 2026 |
| EcoT14I | CCWWGG | 3 cut(s) | 1827, 3838, 4285 |
| EcoT22I | ATGCAT | 3 cut(s) | 1881, 3115, 3700 |
| EcoT38I | GRGCYC | 2 cut(s) | 44, 2251 |
| ErhI | CCWWGG | 3 cut(s) | 1827, 3838, 4285 |
| Esp3I | CGTCTC | 1 cut(s) | 21 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 249, 281 |
| FaqI | GGGAC | 3 cut(s) | 200, 898, 3721 |
| FauI | CCCGC | 1 cut(s) | 3186 |
| FauNDI | CATATG | 3 cut(s) | 90, 2200, 2215 |
| FbaI | TGATCA | 6 cut(s) | 61, 76, 85, 214, 4054, 4267 |
| FblI | GTMKAC | 4 cut(s) | 547, 2820, 2930, 4222 |
| Fnu4HI | GCNGC | 8 cut(s) | 1009, 1571, 2013, 3207, 3306, 3444, 3461, 4514 |
| FriOI | GRGCYC | 2 cut(s) | 44, 2251 |
| Fsp4HI | GCNGC | 8 cut(s) | 1009, 1571, 2013, 3207, 3306, 3444, 3461, 4514 |
| FspI | TGCGCA | 1 cut(s) | 3581 |
| GlaI | GCGC | 4 cut(s) | 397, 3581, 3741, 3768 |
| GluI | GCNGC | 8 cut(s) | 1009, 1571, 2013, 3207, 3306, 3444, 3461, 4514 |
| GsuI | CTGGAG | 5 cut(s) | 621, 1205, 1377, 1567, 4386 |
| HaeII | RGCGCY | 1 cut(s) | 3770 |
| HaeIII | GGCC | 4 cut(s) | 1119, 2356, 3576, 3624 |
| HapII | CCGG | 4 cut(s) | 210, 963, 1981, 4047 |
| HgaI | GACGC | 2 cut(s) | 3198, 4208 |
| HhaI | GCGC | 4 cut(s) | 398, 3582, 3742, 3769 |
| Hin6I | GCGC | 4 cut(s) | 396, 3580, 3740, 3767 |
| HinP1I | GCGC | 4 cut(s) | 396, 3580, 3740, 3767 |
| HincII | GTYRAC | 3 cut(s) | 2314, 2878, 4434 |
| HindII | GTYRAC | 3 cut(s) | 2314, 2878, 4434 |
| HindIII | AAGCTT | 4 cut(s) | 1781, 1895, 3022, 4146 |
| HpaI | GTTAAC | 1 cut(s) | 4434 |
| HpaII | CCGG | 4 cut(s) | 210, 963, 1981, 4047 |
| Hpy99I | CGWCG | 1 cut(s) | 1216 |
| HpyCH4IV | ACGT | 2 cut(s) | 2744, 2924 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 422, 491, 611, 897, 1263, 1484, 3390 |
| HpySE526I | ACGT | 2 cut(s) | 2744, 2924 |
| HspAI | GCGC | 4 cut(s) | 396, 3580, 3740, 3767 |
| Ksp22I | TGATCA | 6 cut(s) | 61, 76, 85, 214, 4054, 4267 |
| KspAI | GTTAAC | 1 cut(s) | 4434 |
| LguI | GCTCTTC | 1 cut(s) | 4354 |
| LmnI | GCTCC | 6 cut(s) | 47, 574, 602, 1139, 1846, 3457 |
| Lsp1109I | GCAGC | 8 cut(s) | 1020, 1557, 1999, 3193, 3317, 3430, 3447, 4500 |
| MabI | ACCWGGT | 2 cut(s) | 276, 4167 |
| MaeII | ACGT | 2 cut(s) | 2744, 2924 |
| MflI | RGATCY | 6 cut(s) | 763, 1375, 2083, 3602, 3790, 3994 |
| MhlI | GDGCHC | 7 cut(s) | 14, 44, 1301, 1843, 2251, 2863, 4390 |
| MlsI | TGGCCA | 1 cut(s) | 1119 |
| MluNI | TGGCCA | 1 cut(s) | 1119 |
| MlyI | GAGTC | 5 cut(s) | 829, 1368, 1442, 1574, 2873 |
| MmeI | TCCRAC | 4 cut(s) | 499, 2970, 3551, 4452 |
| Mox20I | TGGCCA | 1 cut(s) | 1119 |
| Mph1103I | ATGCAT | 3 cut(s) | 1881, 3115, 3700 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1792 |
| MscI | TGGCCA | 1 cut(s) | 1119 |
| MslI | CAYNNNNRTG | 4 cut(s) | 78, 586, 2236, 2648 |
| Msp20I | TGGCCA | 1 cut(s) | 1119 |
| MspA1I | CMGCKG | 1 cut(s) | 2728 |
| MspCI | CTTAAG | 2 cut(s) | 1325, 4508 |
| MspI | CCGG | 4 cut(s) | 210, 963, 1981, 4047 |
| MspR9I | CCNGG | 7 cut(s) | 278, 2574, 3548, 4020, 4048, 4169, 4404 |
| Mva1269I | GAATGC | 3 cut(s) | 1336, 2423, 3429 |
| MvaI | CCWGG | 6 cut(s) | 278, 2574, 3548, 4020, 4169, 4404 |
| MvnI | CGCG | 1 cut(s) | 398 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 422, 491, 611, 897, 1263, 1484, 3390 |
| NciI | CCSGG | 1 cut(s) | 4048 |
| NcoI | CCATGG | 1 cut(s) | 4285 |
| NdeI | CATATG | 3 cut(s) | 90, 2200, 2215 |
| NheI | GCTAGC | 1 cut(s) | 4298 |
| NlaIV | GGNNCC | 4 cut(s) | 765, 1240, 1377, 4389 |
| NmeAIII | GCCGAG | 1 cut(s) | 4442 |
| NmuCI | GTSAC | 6 cut(s) | 357, 567, 1745, 2096, 3368, 4378 |
| NsbI | TGCGCA | 1 cut(s) | 3581 |
| NsiI | ATGCAT | 3 cut(s) | 1881, 3115, 3700 |
| NspI | RCATGY | 9 cut(s) | 591, 1312, 1678, 1715, 1825, 2485, 2953, 3467, 3586 |
| NspV | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| PaeI | GCATGC | 3 cut(s) | 591, 1678, 3467 |
| PagI | TCATGA | 2 cut(s) | 73, 3556 |
| PciI | ACATGT | 2 cut(s) | 1821, 2949 |
| PciSI | GCTCTTC | 1 cut(s) | 4354 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 359, 2084 |
| PctI | GAATGC | 3 cut(s) | 1336, 2423, 3429 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1792 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 2465, 2558, 3454 |
| PfoI | TCCNGGA | 2 cut(s) | 2572, 4402 |
| PinAI | ACCGGT | 1 cut(s) | 1980 |
| PkrI | GCNGC | 8 cut(s) | 1010, 1572, 2014, 3208, 3307, 3445, 3462, 4515 |
| PleI | GAGTC | 5 cut(s) | 828, 1367, 1442, 1574, 2873 |
| PpsI | GAGTC | 5 cut(s) | 828, 1367, 1442, 1574, 2873 |
| PpuMI | RGGWCCY | 2 cut(s) | 707, 3835 |
| PscI | ACATGT | 2 cut(s) | 1821, 2949 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1584 |
| PshBI | ATTAAT | 1 cut(s) | 3245 |
| PsiI | TTATAA | 1 cut(s) | 3816 |
| Psp124BI | GAGCTC | 2 cut(s) | 44, 2251 |
| Psp5II | RGGWCCY | 2 cut(s) | 707, 3835 |
| Psp6I | CCWGG | 6 cut(s) | 276, 2572, 3546, 4018, 4167, 4402 |
| PspEI | GGTNACC | 1 cut(s) | 2096 |
| PspGI | CCWGG | 6 cut(s) | 276, 2572, 3546, 4018, 4167, 4402 |
| PspN4I | GGNNCC | 4 cut(s) | 765, 1240, 1377, 4389 |
| PspPI | GGNCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| PspPPI | RGGWCCY | 2 cut(s) | 707, 3835 |
| PstNI | CAGNNNCTG | 2 cut(s) | 277, 491 |
| PsuI | RGATCY | 6 cut(s) | 763, 1375, 2083, 3602, 3790, 3994 |
| PvuII | CAGCTG | 1 cut(s) | 2728 |
| RsaI | GTAC | 7 cut(s) | 319, 467, 1727, 2921, 3480, 3514, 3936 |
| RsaNI | GTAC | 7 cut(s) | 318, 466, 1726, 2920, 3479, 3513, 3935 |
| RseI | CAYNNNNRTG | 4 cut(s) | 78, 586, 2236, 2648 |
| SacI | GAGCTC | 2 cut(s) | 44, 2251 |
| SapI | GCTCTTC | 1 cut(s) | 4354 |
| SatI | GCNGC | 8 cut(s) | 1009, 1571, 2013, 3207, 3306, 3444, 3461, 4514 |
| Sau96I | GGNCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| ScaI | AGTACT | 1 cut(s) | 1727 |
| SchI | GAGTC | 5 cut(s) | 829, 1368, 1442, 1574, 2873 |
| ScrFI | CCNGG | 7 cut(s) | 278, 2574, 3548, 4020, 4048, 4169, 4404 |
| SduI | GDGCHC | 7 cut(s) | 14, 44, 1301, 1843, 2251, 2863, 4390 |
| SexAI | ACCWGGT | 2 cut(s) | 276, 4167 |
| SfcI | CTRYAG | 4 cut(s) | 2034, 2205, 2397, 2844 |
| SfuI | TTCGAA | 3 cut(s) | 1535, 4444, 4529 |
| SinI | GGWCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 78, 586, 2236, 2648 |
| SmlI | CTYRAG | 4 cut(s) | 1325, 2170, 3485, 4508 |
| SmoI | CTYRAG | 4 cut(s) | 1325, 2170, 3485, 4508 |
| SpeI | ACTAGT | 1 cut(s) | 1513 |
| SphI | GCATGC | 3 cut(s) | 591, 1678, 3467 |
| SsiI | CCGC | 8 cut(s) | 199, 398, 2487, 3193, 3298, 3421, 3427, 4466 |
| SstI | GAGCTC | 2 cut(s) | 44, 2251 |
| StyD4I | CCNGG | 7 cut(s) | 276, 2572, 3546, 4018, 4046, 4167, 4402 |
| StyI | CCWWGG | 3 cut(s) | 1827, 3838, 4285 |
| TaiI | ACGT | 2 cut(s) | 2747, 2927 |
| TaqI | TCGA | 9 cut(s) | 261, 347, 777, 1369, 1535, 3400, 4281, 4444, 4529 |
| TaqII | GACCGA | 1 cut(s) | 3185 |
| TatI | WGTACW | 5 cut(s) | 317, 465, 1725, 2919, 3934 |
| TseFI | GTSAC | 6 cut(s) | 357, 567, 1745, 2096, 3368, 4378 |
| TseI | GCWGC | 8 cut(s) | 1008, 1570, 2012, 3206, 3305, 3443, 3460, 4513 |
| Tsp45I | GTSAC | 6 cut(s) | 357, 567, 1745, 2096, 3368, 4378 |
| TspGWI | ACGGA | 6 cut(s) | 1200, 1417, 2076, 2137, 3202, 3666 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 2465, 2558, 3454 |
| Vha464I | CTTAAG | 2 cut(s) | 1325, 4508 |
| VneI | GTGCAC | 1 cut(s) | 2859 |
| VpaK11BI | GGWCC | 5 cut(s) | 472, 707, 3524, 3835, 4474 |
| VspI | ATTAAT | 1 cut(s) | 3245 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 702, 4404 |
| XceI | RCATGY | 9 cut(s) | 591, 1312, 1678, 1715, 1825, 2485, 2953, 3467, 3586 |
| XmiI | GTMKAC | 4 cut(s) | 547, 2820, 2930, 4222 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1792 |
| ZrmI | AGTACT | 1 cut(s) | 1727 |
| Zsp2I | ATGCAT | 3 cut(s) | 1881, 3115, 3700 |