Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011401

Physical Location & Seq

Genomic Coordinates Forward (+)

12854888 .. 12862597

Gene Structure 7710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG145000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4011 bp

ATGGCTGTTCTGAATTATATAGACTTCTTCTCTACAAGCATACAGAGAGTTGCCCTTTCTACTGTGGTGAACATTTGTAAGAAACTTCCTTCTGAAGGTCCTTCACCTTTCATGGATGCTGTTCCTACATTGTGCAACCTTCTTCAGTATGAGGATCCACAGCTTGTCGAAAATGTTGCTATTTGCTTGATTAGAATTACAGAGCGAGTGAGTCAGTCTTCTGAGATGCTGGATGAACTTTGTAAGCATGGGCTGATTCGTCAAGCCACACATTTTATGAGCTTAAATAGCCGAACTACTCTGTCCCAACCAATTCATAATGGTTTGATAGGGCTACTTGTCAAACTTTCTTCCGGTTCAGTTGTAGCCTTCAGGACTCTATATGAGCTTAATATGAGCAGCATATTAAAGGATATATTATCCACTTATGACCTCTCACATGGAATGTCCTCTACTCATGTTGTGGATGGGCATTGCTATCAGGTATATGAAGTTCTGAAGTTACTAAATGAGCTTCTCCCAACTTCAGCCAGAGATCAAGATGCTCCACAGTTGTCAGAGAAAGAATCTTTTTTAATAAATCGGCCTGAACTTCTGGAAAAGTTTGGGAGGGATATACTTCCGTCTCTGATACAGGTTGTAAATTCCGGTGCCAATTTATATATTTGCTATGGATGCTTGTCAGTCATCAACAAGTTAATTTATTTGAGCACATCTGACATGCTCGTTGAACTGCTTAAGAATGCCAACATTTCAAGTTTTCTGGCTGGAGTCTTTACTCGAAAGGATCCTCATGTGTTGGTATCAACCCTACAGATTGCTGAGTTAATCCTGCAAAAGTTCTCTGATAATTTCTTGGACTCATTTATTAAAGAAGGTGTCTTTTTTGCCATTGATGCTTTGCTAACCCCTGAAAAAAGCTCACTAGTAACACTGAACAAATGTTCGAAGCTGGTGTTTCCAGTGTCTAGTGGAACAAGGCTGCTGTCTGACTCTAGTCAGAAGTCTGCTTCAAAAGAGGTCCTGAGATGCTTATGCTATGCTTTTCCTAGCAGTTCCCCATCAGGGTCAGAAAAAGGAAGTTGCATGCTTGAAAAGGATTCTGTTTATAGTCTTGCAAAGCATGTTAGAACCAAGTACTTTGCACCAGAATTATGTGACCCTGATAAATCATTAACTGATGTTCTTCAGAAGCTTAGAACTTTTTCTGCTTCATTAAGTGATTTGATGAACATGTCCTTGGATACTTGTGCTCCTAATCAGCATGAAGAGAGCTTCTATGGTATAATGCATCAAGTAATGGAAAAGCTTGGCGGAAGAGAACCCATTTCCACTTTTGAATTGATTGAAAGTGGAATTCTGAAGTCCTTGATGACTTACTTGTCCAATGACCGGTATTTGAGACAGAAGGGTGATCTTGTAGCTGCTAAAGGTGATATCTATGCTGTAGAAAAAAGATTTGAGGTGTTCGCAAGGCTATTATTTTCTTTGCCAGATCCGTTCTCTGGTGACCTGCCCATTGTAACATTGATACGGAGATTACAAAGCTCACTATCTACTTTGGAAAATTTCCCCGTTATCTTGAGCCATATACCCAAGCAGAGGAACTCATATGCTACAGTTCCATATGAGCGATACACTGCATATCCATGTATGAGAGCTCGTTTTGTTAGAGACAAGGAAGAGACTACCCTTGGTGATTGCTGTGAAGATGTTTTGACCGTTGACCCTTTTTCTTCATTGGATGCCATTGAAGGATATGTGTGGCCTAAAGTCAATGCAAAAGGAACCAGCCGCATCAAATCAGCTACAATTGAGGGTCAATCAGAATGCACACCATCAAATGCCAGCTCTAGTCAAGGAGGGTGTCCAAATACTGGTGAGCCTGAGAGCATGTCGGCAGACTTGCCTGAGTTGAAGGCAGATGAGGTCAATTTAACACAGCCGGAACCTGAACAAGAACCAAGTTTTGGACAGACAAATCCTGGAACATCTTTAGATGAAACTTATACTGATACTGTGGAGAAAGAAGTAGAAGCTCAATCTGAGGAAGACACACAGATGGAAGAACAGTGTCCTTTATCTTGTAGCAGTGAAGATGCTTCACCGAAATTGTTGTTTTACCTTGAAGGGAAACAGCTGGAACGGTCATTGACATTGTATCAAGCAATTCTTCAACAACAAATGAAAGAACATGAAATTGTCATTGGTTCAAAACTGTGGAGTAAAGTATACACACTGACATATAGAAAAGCTGTAGGTCAAGAAGGTGCTCATAATGAAGGTGTTGACTCGGCAGAGAGTTCCACTGTATCAGATAAAGTTGGGGTGTATACGTTGTATACTTCACTTTTCTCCAACATGTTTCCTTGTGAGCTTGCTTCTGACTTGGAGAAGTCGAATCCTACCTATGACATTGTATATCTGCTCAAAAGCTTGGAAAGTATGAACAAGTTTATTTTTCATCTGTTGTCTCGTCAAAGAATATGTGCTTTTGCTGAAGGGAAAATCAATGACTTGGATGCATTTCAGATAGCAGTTACACCAGTGCCACAGAATGAGTTTTTGAGCAGTAAACTGACCGAAAAACTAGAACAGCAGATGCGGGATGGTTTGGCTGTGTCCGTTGGTGGTATGCCCCTGTGGTGTAATCAATTAATGGCATCATGTCCTTTTTTGTTTAGTTTTGAGGTCAAATGCAAGTATTTCCGCTTGGCAGCCTTTGTTCCACTACTAGGTCAGCCTCCTTCACCGTCTCACAGTGATTCAGGTATGACGAGTGACAGGCGACAAAGCTCTGGTGGCTTACCTCGACAAAAGTTTTTAGTTTTCCGCAACCGCATTCTGGATTCTGCTGCCCAAATGATGGAGCTGCATGCCTGTCAGAAGGTACTTCTTGAGGTGGAATATGATGAAGAAGTTGGTACTGGTCTTGGTCCAACATTGGAATTTTATACCCTGGTTAGTCATGAGTTTCAGAAATCTGGCCTGGGCATGTGGAGAGAGGATGGTGGATCTTTTACCTCTGGTACAAGCCATGCTGAGGATACTGGAATTTTGATAAGTCCTTGTGGTCTCTTTCCTCGTCCGTGGTCATCTACTATGGATGCATCAGATGGGACACAGTTCAGTGAAGTAATCAAGAAGTTTGCGCTTTTGGGGAAAATTGTAGGGAAAGCGCTTCAGGATGGGAGGGTCTTGGATCTGCATTTCTCCAAAGCCTTTTATAAACTAATTCTTGGACAGGACCTTGGTCTGTATGACATCCAGTCATTTGATCCTGTGCTTGGAAGGACACTACTAGAGTTCAAGGCTCTTGTGGAAAGGAAAAGGTTTTTGGAATCTGTACATGGAGAAAATACAACATTTGAGTTTGACTCGTGCTTCAGGGAAACTAGAATTGAGGATCTTTGCCTTGATTTTACACTTCCTGGGTATCCTGATTTTGTCCTTGCATCCGGGTTTGATCATAAAATGGTAAATTCCACGAACTTGGAAGATTATGTTTCACTTATGGCAGATGCAACTATAAATTCTGGAATTTCCAGACAAGTGGAAGCTTTCAAGTCTGGTTTTAACCAGGTGTTCCCTATTGAGCATCTTCAGATTTTCACTGAAGAAGAACTGGAGCGTCTACTATGTGGAGAACGTGATTCTTGGGCTTTCAATGAGCTCCTTGATCATATCAAATTTGACCATGGTTACACTGCTAGCAGTCCTCCCATTGTTAATTTGCTGGAAATCATACATGAGTTTGACCAAGAAAAGCGAAGAGCGTTTCTGCAATTTGTGACTGGGGCACCTCGCTTACCTCCAGGGGGTTTTGCATCCCTCAATCCGAAGTTAACTATTGTTCGAAAGCACTCTAGCAACTCGGCGGACTTGGACCTACCAAGTGTGATGACTTGTGCAAACTATCTTAAGCTGCCACCATACTCTTTGAAAGAGATGATGAAGGAGAAGCTCGTGTATGCCATTAAAGAAGGGCAGGGATCATTCCACCTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1336

Amino Acids

149.14

Weight (kDa)

5.16

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	988 - 1336	7.3e-81	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02880 AT5G02880
fragaria_vesca	FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 FvH4_6g15270
malus_domestica	MD04G1104600.v1.1 MD12G1124500.v1.1
prunus_persica	Prupe.6G241700_v2.0.a1 Prupe.6G241700_v2.0.a1
pyrus_communis	pycom12g12310
rosa_chinensis	RchiOBHm_Chr3g0468671
rosa_laevigata	RLG00000024416
rosa_multiflora	Rmu_sc0011538.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412660
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145000 Rh3BG167500 Rh3DG166300
rosa_wichuraiana	Rw3G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3228
AasI	GACNNNNNNGTC	1 cut(s)	1381
Acc36I	ACCTGC	1 cut(s)	1521
AccB1I	GGYRCC	2 cut(s)	650, 3799
AccB7I	CCANNNNNTGG	3 cut(s)	1877, 1970, 2866
AccI	GTMKAC	4 cut(s)	2232, 2333, 2342, 3634
AciI	CCGC	7 cut(s)	1314, 1795, 2605, 2710, 2833, 2839, 3878
AcsI	RAATTY	9 cut(s)	643, 1356, 1567, 2948, 3054, 3481, 3532, 3540, 3689
AfaI	GTAC	5 cut(s)	1139, 2892, 2926, 3031, 3348
AfeI	AGCGCT	1 cut(s)	3180
AflII	CTTAAG	2 cut(s)	737, 3920
AflIII	ACRYGT	2 cut(s)	1233, 2361
AgeI	ACCGGT	1 cut(s)	1392
AhdI	GACNNNNNGTC	1 cut(s)	3268
AhlI	ACTAGT	1 cut(s)	925
AjnI	CCWGG	6 cut(s)	1984, 2958, 2988, 3430, 3579, 3814
AjuI	GAANNNNNNNTTGG	8 cut(s)	1223, 1255, 1953, 1985, 2190, 2222, 3320, 3352
Alw21I	GWGCWC	5 cut(s)	713, 1255, 1663, 2275, 3675
Alw26I	GTCTC	7 cut(s)	630, 1396, 1668, 1679, 2478, 2760, 3080
Aor51HI	AGCGCT	1 cut(s)	3180
AoxI	GGCC	3 cut(s)	584, 1766, 2986
ApeKI	GCWGC	7 cut(s)	399, 982, 1424, 2717, 2855, 2872, 3925
ApoI	RAATTY	9 cut(s)	643, 1356, 1567, 2948, 3054, 3481, 3532, 3540, 3689
AseI	ATTAAT	1 cut(s)	2657
AsiGI	ACCGGT	1 cut(s)	1392
Asp700I	GAANNNNTTC	1 cut(s)	1204
AspLEI	GCGC	2 cut(s)	3154, 3181
AspS9I	GGNCC	5 cut(s)	98, 1021, 2936, 3247, 3886
AsuC2I	CCSGG	1 cut(s)	3460
AsuHPI	GGTGA	9 cut(s)	79, 96, 1424, 1445, 1520, 1709, 1892, 2097, 2742
AsuII	TTCGAA	2 cut(s)	947, 3856
AsuNHI	GCTAGC	1 cut(s)	3710
AvaII	GGWCC	5 cut(s)	98, 1021, 2936, 3247, 3886
BaeGI	GKGCMC	1 cut(s)	3802
BamHI	GGATCC	2 cut(s)	154, 787
BanI	GGYRCC	2 cut(s)	650, 3799
BanII	GRGCYC	2 cut(s)	1663, 3675
BauI	CACGAG	2 cut(s)	3379, 3965
BbsI	GAAGAC	2 cut(s)	210, 2058
Bbv12I	GWGCWC	5 cut(s)	713, 1255, 1663, 2275, 3675
BbvCI	CCTCAGC	1 cut(s)	3042
BbvI	GCAGC	7 cut(s)	411, 969, 1411, 2729, 2842, 2859, 3912
BccI	CCATC	9 cut(s)	461, 1069, 1846, 2056, 2603, 2860, 3002, 3110, 3182
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	6 cut(s)	1986, 2960, 2990, 3432, 3581, 3816
BciVI	GTATCC	3 cut(s)	1237, 3040, 3447
BclI	TGATCA	2 cut(s)	3466, 3679
BcnI	CCSGG	1 cut(s)	3460
BcoDI	GTCTC	7 cut(s)	630, 1396, 1668, 1679, 2478, 2760, 3080
BcuI	ACTAGT	1 cut(s)	925
BfmI	CTRYAG	4 cut(s)	812, 1446, 1617, 2256
BfoI	RGCGCY	1 cut(s)	3182
BfrI	CTTAAG	2 cut(s)	737, 3920
BfuAI	ACCTGC	1 cut(s)	1521
BfuI	GTATCC	3 cut(s)	1237, 3040, 3447
BisI	GCNGC	8 cut(s)	400, 983, 1425, 1795, 2718, 2856, 2873, 3926
BlsI	GCNGC	8 cut(s)	401, 984, 1426, 1796, 2719, 2857, 2874, 3927
BmcAI	AGTACT	1 cut(s)	1139
Bme1390I	CCNGG	7 cut(s)	1986, 2960, 2990, 3432, 3460, 3581, 3816
Bme18I	GGWCC	5 cut(s)	98, 1021, 2936, 3247, 3886
BmeRI	GACNNNNNGTC	1 cut(s)	3268
BmgT120I	GGNCC	5 cut(s)	98, 1021, 2936, 3247, 3886
BmiI	GGNNCC	6 cut(s)	156, 652, 789, 1789, 1950, 3801
BmrFI	CCNGG	7 cut(s)	1986, 2960, 2990, 3432, 3460, 3581, 3816
BmrI	ACTGGG	1 cut(s)	3804
BmtI	GCTAGC	1 cut(s)	3714
BmuI	ACTGGG	1 cut(s)	3804
BoxI	GACNNNNGTC	2 cut(s)	996, 3252
BpiI	GAAGAC	2 cut(s)	210, 2058
BplI	GAGNNNNNCTC	2 cut(s)	3362, 3394
BpmI	CTGGAG	3 cut(s)	789, 3647, 3798
Bpu10I	CCTNAGC	1 cut(s)	3042
Bpu14I	TTCGAA	2 cut(s)	947, 3856
BpuEI	CTTGAG	2 cut(s)	1603, 2918
BpuMI	CCSGG	1 cut(s)	3460
BsaI	GGTCTC	1 cut(s)	3080
BsaJI	CCNNGG	9 cut(s)	1239, 1693, 2958, 2989, 3089, 3250, 3431, 3697, 3815
BsaWI	WCCGGW	3 cut(s)	353, 647, 1392
BsaXI	ACNNNNNCTCC	2 cut(s)	1237, 1267
Bse118I	RCCGGY	1 cut(s)	1392
Bse1I	ACTGG	8 cut(s)	962, 1882, 2546, 2932, 3055, 3268, 3630, 3799
Bse3DI	GCAATG	1 cut(s)	472
BseBI	CCWGG	6 cut(s)	1986, 2960, 2990, 3432, 3581, 3816
BseDI	CCNNGG	9 cut(s)	1239, 1693, 2958, 2989, 3089, 3250, 3431, 3697, 3815
BseMI	GCAATG	1 cut(s)	472
BseMII	CTCAG	7 cut(s)	213, 813, 1016, 1878, 1902, 2037, 3033
BseNI	ACTGG	8 cut(s)	962, 1882, 2546, 2932, 3055, 3268, 3630, 3799
BseSI	GKGCMC	1 cut(s)	3802
BseXI	GCAGC	7 cut(s)	411, 969, 1411, 2729, 2842, 2859, 3912
BshFI	GGCC	3 cut(s)	586, 1768, 2988
BshNI	GGYRCC	2 cut(s)	650, 3799
BshTI	ACCGGT	1 cut(s)	1392
BsiHKAI	GWGCWC	5 cut(s)	713, 1255, 1663, 2275, 3675
BsiSI	CCGG	5 cut(s)	354, 648, 1393, 1946, 3459
BslFI	GGGAC	2 cut(s)	289, 3133
BsmAI	GTCTC	7 cut(s)	630, 1396, 1668, 1679, 2478, 2760, 3080
BsmBI	CGTCTC	2 cut(s)	630, 2760
BsmFI	GGGAC	2 cut(s)	289, 3133
BsmI	GAATGC	3 cut(s)	748, 1835, 2841
BsnI	GGCC	3 cut(s)	586, 1768, 2988
Bso31I	GGTCTC	1 cut(s)	3080
Bsp119I	TTCGAA	2 cut(s)	947, 3856
Bsp1286I	GDGCHC	6 cut(s)	713, 1255, 1663, 2275, 3675, 3802
Bsp1407I	TGTACA	1 cut(s)	3346
Bsp19I	CCATGG	1 cut(s)	3697
BspACI	CCGC	7 cut(s)	1314, 1795, 2605, 2710, 2833, 2839, 3878
BspANI	GGCC	3 cut(s)	586, 1768, 2988
BspCNI	CTCAG	7 cut(s)	214, 814, 1017, 1879, 1903, 2038, 3034
BspHI	TCATGA	1 cut(s)	2968
BspLI	GGNNCC	6 cut(s)	156, 652, 789, 1789, 1950, 3801
BspMI	ACCTGC	1 cut(s)	1521
BspOI	GCTAGC	1 cut(s)	3714
BspQI	GCTCTTC	1 cut(s)	3766
BspT104I	TTCGAA	2 cut(s)	947, 3856
BspT107I	GGYRCC	2 cut(s)	650, 3799
BspTI	CTTAAG	2 cut(s)	737, 3920
BspTNI	GGTCTC	1 cut(s)	3080
BsrDI	GCAATG	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	1392
BsrGI	TGTACA	1 cut(s)	3346
BsrI	ACTGG	8 cut(s)	962, 1882, 2546, 2932, 3055, 3268, 3630, 3799
BssAI	RCCGGY	1 cut(s)	1392
BssECI	CCNNGG	9 cut(s)	1239, 1693, 2958, 2989, 3089, 3250, 3431, 3697, 3815
BssNAI	GTATAC	3 cut(s)	2233, 2334, 2343
BssSI	CACGAG	2 cut(s)	3379, 3965
BssT1I	CCWWGG	4 cut(s)	1239, 1693, 3250, 3697
Bst1107I	GTATAC	3 cut(s)	2233, 2334, 2343
Bst2BI	CACGAG	2 cut(s)	3379, 3965
Bst2UI	CCWGG	6 cut(s)	1986, 2960, 2990, 3432, 3581, 3816
Bst6I	CTCTTC	4 cut(s)	1263, 1312, 1677, 3766
BstAFI	CTTAAG	2 cut(s)	737, 3920
BstAUI	TGTACA	1 cut(s)	3346
BstBI	TTCGAA	2 cut(s)	947, 3856
BstC8I	GCNNGC	5 cut(s)	1088, 1849, 2379, 2877, 3712
BstDEI	CTNAG	8 cut(s)	222, 822, 1025, 1196, 1887, 1911, 2046, 3042
BstDSI	CCRYGG	2 cut(s)	3089, 3697
BstEII	GGTNACC	1 cut(s)	1508
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstH2I	RGCGCY	1 cut(s)	3182
BstHHI	GCGC	2 cut(s)	3154, 3181
BstMAI	GTCTC	7 cut(s)	630, 1396, 1668, 1679, 2478, 2760, 3080
BstMWI	GCNNNNNNNGC	4 cut(s)	288, 675, 896, 2802
BstNI	CCWGG	6 cut(s)	1986, 2960, 2990, 3432, 3581, 3816
BstNSI	RCATGY	8 cut(s)	724, 1090, 1127, 1237, 1897, 2365, 2879, 2998
BstPAI	GACNNNNGTC	2 cut(s)	996, 3252
BstPI	GGTNACC	1 cut(s)	1508
BstSCI	CCNGG	7 cut(s)	1984, 2958, 2988, 3430, 3458, 3579, 3814
BstSFI	CTRYAG	4 cut(s)	812, 1446, 1617, 2256
BstSLI	GKGCMC	1 cut(s)	3802
BstV1I	GCAGC	7 cut(s)	411, 969, 1411, 2729, 2842, 2859, 3912
BstV2I	GAAGAC	2 cut(s)	210, 2058
BstX2I	RGATCY	6 cut(s)	154, 787, 1495, 3014, 3202, 3406
BstXI	CCANNNNNNTGG	2 cut(s)	3493, 3553
BstYI	RGATCY	6 cut(s)	154, 787, 1495, 3014, 3202, 3406
BstZ17I	GTATAC	3 cut(s)	2233, 2334, 2343
BsuI	GTATCC	3 cut(s)	1237, 3040, 3447
BsuRI	GGCC	3 cut(s)	586, 1768, 2988
BtgI	CCRYGG	2 cut(s)	3089, 3697
BtsI	GCAGTG	3 cut(s)	1638, 2098, 3705
BveI	ACCTGC	1 cut(s)	1521
Cac8I	GCNNGC	5 cut(s)	1088, 1849, 2379, 2877, 3712
CciI	TCATGA	1 cut(s)	2968
CfoI	GCGC	2 cut(s)	3154, 3181
Cfr10I	RCCGGY	1 cut(s)	1392
Cfr13I	GGNCC	5 cut(s)	98, 1021, 2936, 3247, 3886
CseI	GACGC	1 cut(s)	3620
CsiI	ACCWGGT	1 cut(s)	3579
Csp6I	GTAC	5 cut(s)	1138, 2891, 2925, 3030, 3347
CspAI	ACCGGT	1 cut(s)	1392
CviQI	GTAC	5 cut(s)	1138, 2891, 2925, 3030, 3347
DdeI	CTNAG	8 cut(s)	222, 822, 1025, 1196, 1887, 1911, 2046, 3042
DrdI	GACNNNNNNGTC	1 cut(s)	1381
DriI	GACNNNNNGTC	1 cut(s)	3268
DseDI	GACNNNNNNGTC	1 cut(s)	1381
Eam1104I	CTCTTC	4 cut(s)	1263, 1312, 1677, 3766
Eam1105I	GACNNNNNGTC	1 cut(s)	3268
EarI	CTCTTC	4 cut(s)	1263, 1312, 1677, 3766
EciI	GGCGGA	2 cut(s)	1329, 3893
Ecl136II	GAGCTC	2 cut(s)	1661, 3673
Eco130I	CCWWGG	4 cut(s)	1239, 1693, 3250, 3697
Eco24I	GRGCYC	2 cut(s)	1663, 3675
Eco31I	GGTCTC	1 cut(s)	3080
Eco32I	GATATC	1 cut(s)	1438
Eco47I	GGWCC	5 cut(s)	98, 1021, 2936, 3247, 3886
Eco47III	AGCGCT	1 cut(s)	3180
Eco53kI	GAGCTC	2 cut(s)	1661, 3673
Eco91I	GGTNACC	1 cut(s)	1508
EcoICRI	GAGCTC	2 cut(s)	1661, 3673
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	3 cut(s)	98, 1021, 3247
EcoO65I	GGTNACC	1 cut(s)	1508
EcoRI	GAATTC	1 cut(s)	1356
EcoRII	CCWGG	6 cut(s)	1984, 2958, 2988, 3430, 3579, 3814
EcoRV	GATATC	1 cut(s)	1438
EcoT14I	CCWWGG	4 cut(s)	1239, 1693, 3250, 3697
EcoT22I	ATGCAT	3 cut(s)	1293, 2527, 3112
EcoT38I	GRGCYC	2 cut(s)	1663, 3675
ErhI	CCWWGG	4 cut(s)	1239, 1693, 3250, 3697
Esp3I	CGTCTC	2 cut(s)	630, 2760
FalI	AAGNNNNNCTT	2 cut(s)	2157, 2189
FaqI	GGGAC	2 cut(s)	289, 3133
FauI	CCCGC	1 cut(s)	2598
FauNDI	CATATG	2 cut(s)	1612, 1627
FbaI	TGATCA	2 cut(s)	3466, 3679
FblI	GTMKAC	4 cut(s)	2232, 2333, 2342, 3634
Fnu4HI	GCNGC	8 cut(s)	400, 983, 1425, 1795, 2718, 2856, 2873, 3926
FriOI	GRGCYC	2 cut(s)	1663, 3675
Fsp4HI	GCNGC	8 cut(s)	400, 983, 1425, 1795, 2718, 2856, 2873, 3926
GlaI	GCGC	2 cut(s)	3153, 3180
GluI	GCNGC	8 cut(s)	400, 983, 1425, 1795, 2718, 2856, 2873, 3926
GsuI	CTGGAG	3 cut(s)	789, 3647, 3798
HaeII	RGCGCY	1 cut(s)	3182
HaeIII	GGCC	3 cut(s)	586, 1768, 2988
HapII	CCGG	5 cut(s)	354, 648, 1393, 1946, 3459
HgaI	GACGC	1 cut(s)	3620
HhaI	GCGC	2 cut(s)	3154, 3181
Hin6I	GCGC	2 cut(s)	3152, 3179
HinP1I	GCGC	2 cut(s)	3152, 3179
HincII	GTYRAC	3 cut(s)	1726, 2290, 3846
HindII	GTYRAC	3 cut(s)	1726, 2290, 3846
HindIII	AAGCTT	4 cut(s)	1193, 1307, 2434, 3558
HpaI	GTTAAC	1 cut(s)	3846
HpaII	CCGG	5 cut(s)	354, 648, 1393, 1946, 3459
HphI	GGTGA	9 cut(s)	79, 96, 1424, 1445, 1520, 1709, 1892, 2097, 2742
Hpy166II	GTNNAC	9 cut(s)	70, 1726, 2233, 2290, 2334, 2343, 2576, 3635, 3846
Hpy8I	GTNNAC	9 cut(s)	70, 1726, 2233, 2290, 2334, 2343, 2576, 3635, 3846
HpyCH4IV	ACGT	2 cut(s)	2336, 3649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	288, 675, 896, 2802
HpyF3I	CTNAG	8 cut(s)	222, 822, 1025, 1196, 1887, 1911, 2046, 3042
HpySE526I	ACGT	2 cut(s)	2336, 3649
HspAI	GCGC	2 cut(s)	3152, 3179
Ksp22I	TGATCA	2 cut(s)	3466, 3679
KspAI	GTTAAC	1 cut(s)	3846
LguI	GCTCTTC	1 cut(s)	3766
LmnI	GCTCC	5 cut(s)	550, 1258, 2869, 3628, 3678
Lsp1109I	GCAGC	7 cut(s)	411, 969, 1411, 2729, 2842, 2859, 3912
MabI	ACCWGGT	1 cut(s)	3579
MaeII	ACGT	2 cut(s)	2336, 3649
MaeIII	GTNAC	9 cut(s)	501, 928, 1157, 1508, 1522, 2539, 2780, 3701, 3790
MfeI	CAATTG	1 cut(s)	1812
MflI	RGATCY	6 cut(s)	154, 787, 1495, 3014, 3202, 3406
MhlI	GDGCHC	6 cut(s)	713, 1255, 1663, 2275, 3675, 3802
MlyI	GAGTC	7 cut(s)	220, 370, 780, 854, 986, 2285, 3371
MmeI	TCCRAC	2 cut(s)	2382, 2963
Mph1103I	ATGCAT	3 cut(s)	1293, 2527, 3112
MroXI	GAANNNNTTC	1 cut(s)	1204
MslI	CAYNNNNRTG	2 cut(s)	1648, 2060
MspA1I	CMGCKG	1 cut(s)	2140
MspCI	CTTAAG	2 cut(s)	737, 3920
MspI	CCGG	5 cut(s)	354, 648, 1393, 1946, 3459
MspR9I	CCNGG	7 cut(s)	1986, 2960, 2990, 3432, 3460, 3581, 3816
MunI	CAATTG	1 cut(s)	1812
Mva1269I	GAATGC	3 cut(s)	748, 1835, 2841
MvaI	CCWGG	6 cut(s)	1986, 2960, 2990, 3432, 3581, 3816
MwoI	GCNNNNNNNGC	4 cut(s)	288, 675, 896, 2802
NciI	CCSGG	1 cut(s)	3460
NcoI	CCATGG	1 cut(s)	3697
NdeI	CATATG	2 cut(s)	1612, 1627
NheI	GCTAGC	1 cut(s)	3710
NlaIV	GGNNCC	6 cut(s)	156, 652, 789, 1789, 1950, 3801
NmeAIII	GCCGAG	2 cut(s)	2273, 3854
NmuCI	GTSAC	4 cut(s)	1157, 1508, 2780, 3790
NsiI	ATGCAT	3 cut(s)	1293, 2527, 3112
NspI	RCATGY	8 cut(s)	724, 1090, 1127, 1237, 1897, 2365, 2879, 2998
NspV	TTCGAA	2 cut(s)	947, 3856
PaeI	GCATGC	2 cut(s)	1090, 2879
PagI	TCATGA	1 cut(s)	2968
PciI	ACATGT	2 cut(s)	1233, 2361
PciSI	GCTCTTC	1 cut(s)	3766
PctI	GAATGC	3 cut(s)	748, 1835, 2841
PdmI	GAANNNNTTC	1 cut(s)	1204
PfeI	GAWTC	8 cut(s)	256, 566, 1100, 2401, 2765, 2849, 3341, 3653
PflMI	CCANNNNNTGG	3 cut(s)	1877, 1970, 2866
PfoI	TCCNGGA	1 cut(s)	1984
PinAI	ACCGGT	1 cut(s)	1392
PkrI	GCNGC	8 cut(s)	401, 984, 1426, 1796, 2719, 2857, 2874, 3927
PleI	GAGTC	7 cut(s)	219, 370, 779, 854, 986, 2285, 3371
PpsI	GAGTC	7 cut(s)	219, 370, 779, 854, 986, 2285, 3371
PpuMI	RGGWCCY	3 cut(s)	98, 1021, 3247
PscI	ACATGT	2 cut(s)	1233, 2361
PshAI	GACNNNNGTC	2 cut(s)	996, 3252
PshBI	ATTAAT	1 cut(s)	2657
PsiI	TTATAA	1 cut(s)	3228
Psp124BI	GAGCTC	2 cut(s)	1663, 3675
Psp5II	RGGWCCY	3 cut(s)	98, 1021, 3247
Psp6I	CCWGG	6 cut(s)	1984, 2958, 2988, 3430, 3579, 3814
PspEI	GGTNACC	1 cut(s)	1508
PspGI	CCWGG	6 cut(s)	1984, 2958, 2988, 3430, 3579, 3814
PspN4I	GGNNCC	6 cut(s)	156, 652, 789, 1789, 1950, 3801
PspPI	GGNCC	5 cut(s)	98, 1021, 2936, 3247, 3886
PspPPI	RGGWCCY	3 cut(s)	98, 1021, 3247
PsrI	GAACNNNNNNTAC	2 cut(s)	477, 509
PsuI	RGATCY	6 cut(s)	154, 787, 1495, 3014, 3202, 3406
PvuII	CAGCTG	1 cut(s)	2140
RsaI	GTAC	5 cut(s)	1139, 2892, 2926, 3031, 3348
RsaNI	GTAC	5 cut(s)	1138, 2891, 2925, 3030, 3347
RseI	CAYNNNNRTG	2 cut(s)	1648, 2060
SacI	GAGCTC	2 cut(s)	1663, 3675
SapI	GCTCTTC	1 cut(s)	3766
SatI	GCNGC	8 cut(s)	400, 983, 1425, 1795, 2718, 2856, 2873, 3926
Sau96I	GGNCC	5 cut(s)	98, 1021, 2936, 3247, 3886
ScaI	AGTACT	1 cut(s)	1139
SchI	GAGTC	7 cut(s)	220, 370, 780, 854, 986, 2285, 3371
ScrFI	CCNGG	7 cut(s)	1986, 2960, 2990, 3432, 3460, 3581, 3816
SduI	GDGCHC	6 cut(s)	713, 1255, 1663, 2275, 3675, 3802
SexAI	ACCWGGT	1 cut(s)	3579
SfcI	CTRYAG	4 cut(s)	812, 1446, 1617, 2256
SfuI	TTCGAA	2 cut(s)	947, 3856
SinI	GGWCC	5 cut(s)	98, 1021, 2936, 3247, 3886
SmiMI	CAYNNNNRTG	2 cut(s)	1648, 2060
SmlI	CTYRAG	4 cut(s)	737, 1582, 2897, 3920
SmoI	CTYRAG	4 cut(s)	737, 1582, 2897, 3920
SpeI	ACTAGT	1 cut(s)	925
SphI	GCATGC	2 cut(s)	1090, 2879
SsiI	CCGC	7 cut(s)	1314, 1795, 2605, 2710, 2833, 2839, 3878
SstI	GAGCTC	2 cut(s)	1663, 3675
StyD4I	CCNGG	7 cut(s)	1984, 2958, 2988, 3430, 3458, 3579, 3814
StyI	CCWWGG	4 cut(s)	1239, 1693, 3250, 3697
TaiI	ACGT	2 cut(s)	2339, 3652
TaqI	TCGA	6 cut(s)	168, 781, 947, 2399, 2812, 3856
TaqII	GACCGA	1 cut(s)	2597
TatI	WGTACW	2 cut(s)	1137, 3346
TauI	GCSGC	1 cut(s)	1797
TfiI	GAWTC	8 cut(s)	256, 566, 1100, 2401, 2765, 2849, 3341, 3653
TseFI	GTSAC	4 cut(s)	1157, 1508, 2780, 3790
TseI	GCWGC	7 cut(s)	399, 982, 1424, 2717, 2855, 2872, 3925
Tsp45I	GTSAC	4 cut(s)	1157, 1508, 2780, 3790
TspGWI	ACGGA	5 cut(s)	612, 1488, 1549, 2614, 3078
Van91I	CCANNNNNTGG	3 cut(s)	1877, 1970, 2866
Vha464I	CTTAAG	2 cut(s)	737, 3920
VpaK11BI	GGWCC	5 cut(s)	98, 1021, 2936, 3247, 3886
VspI	ATTAAT	1 cut(s)	2657
XagI	CCTNNNNNAGG	1 cut(s)	93
XapI	RAATTY	9 cut(s)	643, 1356, 1567, 2948, 3054, 3481, 3532, 3540, 3689
XceI	RCATGY	8 cut(s)	724, 1090, 1127, 1237, 1897, 2365, 2879, 2998
XmiI	GTMKAC	4 cut(s)	2232, 2333, 2342, 3634
XmnI	GAANNNNTTC	1 cut(s)	1204
ZrmI	AGTACT	1 cut(s)	1139
Zsp2I	ATGCAT	3 cut(s)	1293, 2527, 3112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.