Prupe.6G290000_v2.0.a1

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012842
Physical Location & Seq
Forward (+)
26774041 .. 26777880
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G290000.2

Sequence Viewer

Length: 762 bp
ATGGATGTGAGAGTTGGGGTCTTAGTTCTTTTTGTGCTGGGAGCTAGTTGGGCCGGTGATGCTAGACAACTGGCAAACCTAAATTTACCAGTTACAAAGACAGCCCACCATATTCAAGTGGTGGAAACTCAAACTTTACAAGTTTCTGGGGATGAATTTGTTGGGAATGATAATGTGTGCACATTGTGTGAGGAGTTTGCTGCCCAGGCACTTGATTACCTTAGTGAAAACAAGACCCAGACCGAGATCATTGAAGCCCTACATCAGACCTGCTATCAATTGGGCTCTTTCAAGCAGCAGTGTATCACTTTGGTGGACTATTATGCTCCTCTCTTCTTCTTGGAGGTCTCCTCTCTACAACCTAGTGAGTTCTGCCGGAAGGTCAACCTCTGTCAGCAGGTTGCTTTATTTTCTTCACAACTCCGAGAGGATAGCTGTGGATTATGTCACCGTGCTGTTTCAGAAGTATTGGTTAAGTTGAAAGATCCTGATACACAGCTGGAGATCATTGAGTTGCTTTTGAAGGCGTGCAATTCGGTGGAAAACTATGCCAAAAAGTGCAAGAGGATTGTTTTCGAATATGGACCGTTATTTCTTGCCAATGCAGAGCAGTTCCTTGAAACAACAGACATATGCACTACACTTCATGCCTGCAATTCAAGCGTAGCTAGTACCGAGGAAGCATCGCCAGTGACAGTTGTAACCGTTCTGTCTGACTCTAAGTCTCGGCAACAAAGAGATACTGGAATGATGGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

254

Amino Acids

28.13

Weight (kDa)

4.76

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 278, 388
AclWI GGATC 1 cut(s) 479
AcsI RAATTY 2 cut(s) 82, 155
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 1 cut(s) 673
AgsI TTSAA 7 cut(s) 116, 254, 292, 481, 523, 620, 660
AhdI GACNNNNNGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 4 cut(s) 44, 435, 499, 668
AluI AGCT 4 cut(s) 44, 435, 499, 668
Alw21I GWGCWC 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 352, 729
Alw44I GTGCAC 1 cut(s) 178
AlwI GGATC 1 cut(s) 479
AoxI GGCC 1 cut(s) 51
ApaLI GTGCAC 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 200, 295
ApoI RAATTY 2 cut(s) 82, 155
AspS9I GGNCC 2 cut(s) 51, 584
AsuHPI GGTGA 2 cut(s) 68, 440
AsuII TTCGAA 1 cut(s) 576
AvaII GGWCC 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 182
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 187, 307
BccI CCATC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 352, 729
BfaI CTAG 4 cut(s) 45, 63, 363, 669
BfuAI ACCTGC 2 cut(s) 278, 388
BisI GCNGC 2 cut(s) 201, 296
BlsI GCNGC 2 cut(s) 202, 297
Bme1390I CCNGG 1 cut(s) 206
Bme18I GGWCC 1 cut(s) 584
BmeRI GACNNNNNGTC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 51, 584
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 49, 692
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 521
Bpu14I TTCGAA 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 352
BsaJI CCNNGG 2 cut(s) 204, 675
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 75, 89, 689, 748
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 2 cut(s) 204, 675
BseGI GGATG 2 cut(s) 10, 157
BseNI ACTGG 4 cut(s) 75, 89, 689, 748
BseRI GAGGAG 3 cut(s) 206, 318, 340
BseSI GKGCMC 1 cut(s) 182
BseXI GCAGC 2 cut(s) 187, 307
BseYI CCCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 182
BsiSI CCGG 2 cut(s) 54, 376
BsmAI GTCTC 2 cut(s) 352, 729
BsnI GGCC 1 cut(s) 53
Bso31I GGTCTC 1 cut(s) 352
Bsp119I TTCGAA 1 cut(s) 576
Bsp1286I GDGCHC 2 cut(s) 182, 287
Bsp143I GATC 3 cut(s) 246, 484, 504
BspANI GGCC 1 cut(s) 53
BspMI ACCTGC 2 cut(s) 278, 388
BspPI GGATC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 352
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 4 cut(s) 75, 89, 689, 748
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 204, 675
BssMI GATC 3 cut(s) 246, 484, 504
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 4 cut(s) 452, 588, 697, 706
Bst6I CTCTTC 1 cut(s) 338
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 529, 652
BstDEI CTNAG 3 cut(s) 22, 221, 720
BstF5I GGATG 2 cut(s) 10, 157
BstKTI GATC 3 cut(s) 249, 487, 507
BstMAI GTCTC 2 cut(s) 352, 729
BstMBI GATC 3 cut(s) 246, 484, 504
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 206, 660
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstSLI GKGCMC 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 187, 307
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 10, 157
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 696
BveI ACCTGC 2 cut(s) 278, 388
Cac8I GCNNGC 2 cut(s) 529, 652
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 51, 584
Csp6I GTAC 1 cut(s) 672
CviAII CATG 1 cut(s) 647
CviJI RGCY 8 cut(s) 44, 53, 104, 257, 285, 435, 499, 668
CviKI_1 RGCY 8 cut(s) 44, 53, 104, 257, 285, 435, 499, 668
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 3 cut(s) 22, 221, 720
DpnI GATC 3 cut(s) 248, 486, 506
DpnII GATC 3 cut(s) 246, 484, 504
DraIII CACNNNGTG 1 cut(s) 186
DriI GACNNNNNGTC 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 338
Eam1105I GACNNNNNGTC 1 cut(s) 721
EarI CTCTTC 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 352
Eco47I GGWCC 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 204
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 1 cut(s) 650
FaiI YATR 8 cut(s) 111, 324, 445, 549, 582, 632, 634, 648
FatI CATG 1 cut(s) 646
FauNDI CATATG 1 cut(s) 632
Fnu4HI GCNGC 2 cut(s) 201, 296
FokI GGATG 2 cut(s) 17, 164
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 201, 296
FspBI CTAG 4 cut(s) 45, 63, 363, 669
GluI GCNGC 2 cut(s) 201, 296
GsaI CCCAGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 521
HaeIII GGCC 1 cut(s) 53
HapII CCGG 2 cut(s) 54, 376
Hin1II CATG 1 cut(s) 650
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 1 cut(s) 716
HpaII CCGG 2 cut(s) 54, 376
HphI GGTGA 2 cut(s) 68, 440
Hpy166II GTNNAC 3 cut(s) 180, 316, 385
Hpy188I TCNGA 4 cut(s) 267, 425, 463, 715
Hpy188III TCNNGA 1 cut(s) 488
Hpy8I GTNNAC 3 cut(s) 180, 316, 385
HpyAV CCTTC 2 cut(s) 373, 517
HpyCH4III ACNGT 4 cut(s) 452, 588, 697, 706
HpyCH4V TGCA 6 cut(s) 180, 531, 561, 605, 636, 654
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 206, 660
HpyF3I CTNAG 3 cut(s) 22, 221, 720
Hsp92II CATG 1 cut(s) 650
Kzo9I GATC 3 cut(s) 246, 484, 504
LmnI GCTCC 2 cut(s) 41, 331
Lsp1109I GCAGC 2 cut(s) 187, 307
LweI GCATC 2 cut(s) 49, 692
MaeI CTAG 4 cut(s) 45, 63, 363, 669
MaeIII GTNAC 4 cut(s) 91, 446, 691, 700
MalI GATC 3 cut(s) 248, 486, 506
MboI GATC 3 cut(s) 246, 484, 504
MboII GAAGA 3 cut(s) 325, 328, 405
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 2 cut(s) 182, 287
MluCI AATT 5 cut(s) 82, 155, 278, 532, 655
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 9 cut(s) 184, 337, 339, 361, 398, 421, 558, 670, 748
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 2 cut(s) 54, 376
MspR9I CCNGG 1 cut(s) 206
MunI CAATTG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 206
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 206, 660
NdeI CATATG 1 cut(s) 632
NdeII GATC 3 cut(s) 246, 484, 504
NlaIII CATG 1 cut(s) 650
NmeAIII GCCGAG 1 cut(s) 706
NmuCI GTSAC 2 cut(s) 446, 691
NspV TTCGAA 1 cut(s) 576
OliI CACNNNNGTG 1 cut(s) 311
PkrI GCNGC 2 cut(s) 202, 297
PleI GAGTC 1 cut(s) 710
PpsI GAGTC 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 2 cut(s) 51, 584
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 499
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 201, 296
Sau3AI GATC 3 cut(s) 246, 484, 504
Sau96I GGNCC 2 cut(s) 51, 584
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 2 cut(s) 182, 287
SfaNI GCATC 2 cut(s) 49, 692
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 584
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 5 cut(s) 82, 155, 278, 532, 655
SspMI CTAG 4 cut(s) 45, 63, 363, 669
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 4 cut(s) 452, 588, 697, 706
TaqI TCGA 1 cut(s) 576
TaqII GACCGA 1 cut(s) 257
TasI AATT 5 cut(s) 82, 155, 278, 532, 655
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 2 cut(s) 305, 696
TseFI GTSAC 2 cut(s) 446, 691
TseI GCWGC 2 cut(s) 200, 295
Tsp45I GTSAC 2 cut(s) 446, 691
TspDTI ATGAA 2 cut(s) 168, 635
TspRI CASTG 2 cut(s) 305, 696
VneI GTGCAC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 2 cut(s) 82, 155
XspI CTAG 4 cut(s) 45, 63, 363, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.