Rorug03G0047300

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012842
Physical Location & Seq
Reverse (-)
3627829 .. 3631575
3747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0047300.1

Sequence Viewer

Length: 1101 bp
ATGGGAGGGAGTTTTTCAGACGTGAAAGGTGGCAAGCAGGCCGTTGAGCTCTTTAACCGCTACCGTGGGGTTTATCCTCTCTACACTCCGCTCGAGTGTTTTGATGGAGTGAGGACAGTTGATCAGTTCAAAGCACTGGAAAGATATCTGAAAGCTGACAATAATGCCAATCGCTACTGTGGTATTTGTGGAGGTACTCTCTTGCAATGTGCCGTCCGAAACAGGCAAGTGGATGTTGTTCGTCTACTTCTTTCTACTGGAGCCGATATCTTCAAGACTAATGATGGACATCTTCCTCTCGACATTGCTAAGGAAGAAGGGTACCACACAATTGTCCGTTTATTTGAGGATCATCTCTTTGCTGAAAATGAAAACTGGCGGTTGGTTATGGCGAATAGAGCTTCGCTGGACCTTGCATATTTGCCCAGCAGTTCGTTTTCTTCCAAGCCAAGTCATGCTGCAGATTCACATCTACTGCCATCCGCTCCACCACTACCACCACAGCTAGTGGTGTTGGAGGAAGTATCAAACTTTCATGCGGCATCTTCCAGATTGAGCAGAAGCTCTAGCTATATTCCAGAATGGTCAGATTACTGGGGCAGACCAACTCCAGATGCACCTAACAGTTTTACTTCTTCTGTGCCAAGTCATGGTGAAGGTTCACAGCCACTACCATCTCCACCACTAACTGTTCCACCACTAGCAGCACTTCCTGAAGAAGAAAACACCAATGATGAGGAAGAAGAGCGTCAAGTGGCTATGGCGATTAAGGTCTCTTTGGAGCCTGATTTGAAAGAAGGAATCATCCCACAATGGTCATTTTGGCTGGATGAACCAATTGGAGAGGCATCTAGCAGTTCTACACCTTTGCAACGAGGTCAAGCTACAGGTTCACAGTCACTGTCATCTGCTCAACAAATTCCAAATGATTCCAGTAGCAGTCGAGAATGCGAGTACTGTTATGATGCTCCGATCAAAGCAGCTTGTGATCCCTGTGGGCATGTTGCTTGCTTCAACTGCTGGCTAAAGATTCAGGACTCTGCAAACAAGTGCCCTCATTGTCGAGTAGAGATCAAGAAGATTATCAAGCTTTATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

366

Amino Acids

40.41

Weight (kDa)

5.2

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 45 - 114 3e-07 Ankyrin repeats (3 copies)
zf-C3HC4_3 PF13920 314 - 360 2.3e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 650
AccBSI CCGCTC 2 cut(s) 91, 485
AccI GTMKAC 1 cut(s) 244
AciI CCGC 5 cut(s) 58, 89, 379, 483, 539
AclWI GGATC 2 cut(s) 357, 983
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 3 cut(s) 196, 323, 956
AfiI CCNNNNNNNGG 1 cut(s) 650
AgsI TTSAA 4 cut(s) 130, 274, 793, 1015
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 9 cut(s) 49, 155, 401, 505, 564, 570, 884, 983, 1090
AluI AGCT 9 cut(s) 49, 155, 401, 505, 564, 570, 884, 983, 1090
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 778
AlwI GGATC 2 cut(s) 357, 983
AlwNI CAGNNNCTG 1 cut(s) 901
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 3 cut(s) 458, 704, 980
ApoI RAATTY 1 cut(s) 918
Asp718I GGTACC 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 665
AvaI CYCGRG 1 cut(s) 92
AvaII GGWCC 1 cut(s) 409
BaeGI GKGCMC 1 cut(s) 1055
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 445, 716, 992
BccI CCATC 4 cut(s) 98, 278, 487, 682
BceAI ACGGC 2 cut(s) 26, 197
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 778
BfaI CTAG 4 cut(s) 506, 567, 701, 852
BfmI CTRYAG 2 cut(s) 459, 885
BisI GCNGC 4 cut(s) 459, 540, 705, 981
BlsI GCNGC 4 cut(s) 460, 541, 706, 982
BmcAI AGTACT 1 cut(s) 956
Bme18I GGWCC 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 409
BmiI GGNNCC 3 cut(s) 262, 323, 783
BmrI ACTGGG 1 cut(s) 604
BmsI GCATC 4 cut(s) 551, 604, 857, 955
BmuI ACTGGG 1 cut(s) 604
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 2 cut(s) 279, 594
Bpu10I CCTNAGC 1 cut(s) 309
BsaBI GATNNNNATC 2 cut(s) 288, 468
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse1I ACTGG 5 cut(s) 141, 262, 380, 599, 933
Bse3DI GCAATG 2 cut(s) 212, 303
Bse8I GATNNNNATC 2 cut(s) 288, 468
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 4 cut(s) 238, 479, 804, 835
BseJI GATNNNNATC 2 cut(s) 288, 468
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 2 cut(s) 212, 303
BseNI ACTGG 5 cut(s) 141, 262, 380, 599, 933
BseSI GKGCMC 1 cut(s) 1055
BseXI GCAGC 3 cut(s) 445, 716, 992
BseYI CCCAGC 1 cut(s) 425
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 321
BsiHKAI GWGCWC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 650
BsmAI GTCTC 1 cut(s) 778
BsmI GAATGC 1 cut(s) 953
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 51, 1055
Bsp143I GATC 5 cut(s) 121, 349, 972, 988, 1071
BspACI CCGC 5 cut(s) 58, 89, 379, 483, 539
BspANI GGCC 1 cut(s) 41
BspLI GGNNCC 3 cut(s) 262, 323, 783
BspMAI CTGCAG 1 cut(s) 463
BspPI GGATC 2 cut(s) 357, 983
BspQI GCTCTTC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 778
BsrBI CCGCTC 2 cut(s) 91, 485
BsrDI GCAATG 2 cut(s) 212, 303
BsrI ACTGG 5 cut(s) 141, 262, 380, 599, 933
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 5 cut(s) 121, 349, 972, 988, 1071
Bst4CI ACNGT 8 cut(s) 65, 118, 179, 626, 691, 897, 903, 959
Bst6I CTCTTC 1 cut(s) 738
BstC8I GCNNGC 4 cut(s) 35, 39, 1009, 1022
BstDEI CTNAG 1 cut(s) 309
BstDSI CCRYGG 1 cut(s) 64
BstF5I GGATG 4 cut(s) 238, 479, 804, 835
BstKTI GATC 5 cut(s) 124, 352, 975, 991, 1074
BstMAI GTCTC 1 cut(s) 778
BstMBI GATC 5 cut(s) 121, 349, 972, 988, 1071
BstMWI GCNNNNNNNGC 2 cut(s) 398, 1017
BstNSI RCATGY 1 cut(s) 1004
BstSFI CTRYAG 2 cut(s) 459, 885
BstSLI GKGCMC 1 cut(s) 1055
BstV1I GCAGC 3 cut(s) 445, 716, 992
BsuRI GGCC 1 cut(s) 41
BtgI CCRYGG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 4 cut(s) 238, 479, 804, 835
BtsIMutI CAGTG 2 cut(s) 134, 899
Cac8I GCNNGC 4 cut(s) 35, 39, 1009, 1022
CaiI CAGNNNCTG 1 cut(s) 901
Cfr13I GGNCC 1 cut(s) 409
CseI GACGC 1 cut(s) 737
Csp6I GTAC 3 cut(s) 195, 322, 955
CviAII CATG 4 cut(s) 455, 536, 650, 1001
CviQI GTAC 3 cut(s) 195, 322, 955
DdeI CTNAG 1 cut(s) 309
DpnI GATC 5 cut(s) 123, 351, 974, 990, 1073
DpnII GATC 5 cut(s) 121, 349, 972, 988, 1071
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 778
Eco32I GATATC 2 cut(s) 146, 268
Eco47I GGWCC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 49
EcoRV GATATC 2 cut(s) 146, 268
EcoT38I GRGCYC 1 cut(s) 51
FaeI CATG 4 cut(s) 458, 539, 653, 1004
FatI CATG 4 cut(s) 454, 535, 649, 1000
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 244
Fnu4HI GCNGC 4 cut(s) 459, 540, 705, 981
FokI GGATG 4 cut(s) 245, 466, 791, 842
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 459, 540, 705, 981
FspBI CTAG 4 cut(s) 506, 567, 701, 852
GluI GCNGC 4 cut(s) 459, 540, 705, 981
GsaI CCCAGC 1 cut(s) 429
GsuI CTGGAG 2 cut(s) 279, 594
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 737
Hin1II CATG 4 cut(s) 458, 539, 653, 1004
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 5 cut(s) 464, 801, 929, 1030, 1037
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 3 cut(s) 245, 662, 893
Hpy188I TCNGA 5 cut(s) 19, 150, 218, 589, 972
Hpy188III TCNNGA 9 cut(s) 274, 299, 549, 578, 611, 713, 944, 1034, 1075
Hpy8I GTNNAC 3 cut(s) 245, 662, 893
HpyAV CCTTC 3 cut(s) 311, 650, 791
HpyCH4III ACNGT 8 cut(s) 65, 118, 179, 626, 691, 897, 903, 959
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 6 cut(s) 205, 416, 461, 617, 871, 1043
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 1017
HpyF3I CTNAG 1 cut(s) 309
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 4 cut(s) 458, 539, 653, 1004
KpnI GGTACC 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 5 cut(s) 121, 349, 972, 988, 1071
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 4 cut(s) 260, 490, 781, 973
Lsp1109I GCAGC 3 cut(s) 445, 716, 992
LweI GCATC 4 cut(s) 551, 604, 857, 955
MaeI CTAG 4 cut(s) 506, 567, 701, 852
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 897
MalI GATC 5 cut(s) 123, 351, 974, 990, 1073
MbiI CCGCTC 2 cut(s) 91, 485
MboI GATC 5 cut(s) 121, 349, 972, 988, 1071
MfeI CAATTG 2 cut(s) 330, 837
MhlI GDGCHC 2 cut(s) 51, 1055
MluCI AATT 3 cut(s) 330, 837, 918
MlyI GAGTC 1 cut(s) 1031
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 2 cut(s) 54, 768
MunI CAATTG 2 cut(s) 330, 837
Mva1269I GAATGC 1 cut(s) 953
MwoI GCNNNNNNNGC 2 cut(s) 398, 1017
NdeII GATC 5 cut(s) 121, 349, 972, 988, 1071
NlaIII CATG 4 cut(s) 458, 539, 653, 1004
NlaIV GGNNCC 3 cut(s) 262, 323, 783
NmuCI GTSAC 1 cut(s) 897
NspI RCATGY 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 738
PctI GAATGC 1 cut(s) 953
PfeI GAWTC 4 cut(s) 464, 801, 929, 1030
PflMI CCANNNNNTGG 1 cut(s) 650
PkrI GCNGC 4 cut(s) 460, 541, 706, 982
PleI GAGTC 1 cut(s) 1031
PpsI GAGTC 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 425
PspN4I GGNNCC 3 cut(s) 262, 323, 783
PspPI GGNCC 1 cut(s) 409
PspXI VCTCGAGB 1 cut(s) 92
PstI CTGCAG 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 901
RsaI GTAC 3 cut(s) 196, 323, 956
RsaNI GTAC 3 cut(s) 195, 322, 955
SacI GAGCTC 1 cut(s) 51
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 2 cut(s) 54, 768
SatI GCNGC 4 cut(s) 459, 540, 705, 981
Sau3AI GATC 5 cut(s) 121, 349, 972, 988, 1071
Sau96I GGNCC 1 cut(s) 409
ScaI AGTACT 1 cut(s) 956
SchI GAGTC 1 cut(s) 1031
SduI GDGCHC 2 cut(s) 51, 1055
SfaNI GCATC 4 cut(s) 551, 604, 857, 955
SfcI CTRYAG 2 cut(s) 459, 885
Sfr274I CTCGAG 1 cut(s) 92
SinI GGWCC 1 cut(s) 409
SlaI CTCGAG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 330, 837, 918
SsiI CCGC 5 cut(s) 58, 89, 379, 483, 539
SspMI CTAG 4 cut(s) 506, 567, 701, 852
SstI GAGCTC 1 cut(s) 51
TaaI ACNGT 8 cut(s) 65, 118, 179, 626, 691, 897, 903, 959
TaiI ACGT 1 cut(s) 24
TaqI TCGA 4 cut(s) 93, 300, 943, 1063
TasI AATT 3 cut(s) 330, 837, 918
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 4 cut(s) 464, 801, 929, 1030
Tru1I TTAA 2 cut(s) 54, 768
Tru9I TTAA 2 cut(s) 54, 768
TscAI CASTG 2 cut(s) 141, 906
TseFI GTSAC 1 cut(s) 897
TseI GCWGC 3 cut(s) 458, 704, 980
Tsp45I GTSAC 1 cut(s) 897
TspDTI ATGAA 3 cut(s) 384, 524, 846
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 2 cut(s) 141, 906
Van91I CCANNNNNTGG 1 cut(s) 650
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 1 cut(s) 918
XceI RCATGY 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 92
XmiI GTMKAC 1 cut(s) 244
XspI CTAG 4 cut(s) 506, 567, 701, 852
ZrmI AGTACT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.