Rh3CG110000

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0012842
Physical Location & Seq
Reverse (-)
8753254 .. 8757781
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG110000.1

Sequence Viewer

Length: 738 bp
ATGTTTTTATACTGGGCTCTAATGTTATTGAGTGGAACTTCAGGCACCATGGATATGAGAGTTGGGTTCATAATTCTTTTTGTGCTGGGAGCTAGTTGGGCTTGTGATGCTAGACATGTGGTGGAGCTTAGTTTGTCAGTGCAAGAGGGGGAACCTCAAACTTTGAAAGAATTTTCTGGGAATGAAAATGTTTGCACATTATGTGAAGAGTTTGCATCTCAGGCACTTGATTACATCAGTGAAAACAAGACTCAGACTGAGATCATTGGAATTCTACATAACACCTGCTCTCAATTGAAATCTTTCAGCCAGCAGTGTGTCACTTTGGTGGACTACTATGCTCCTCTCTTCTTCCTAGAGGTTTCCTCTGTAGAACCAGTTGATTTCTGTCGGAAGGTCAACCTATGTCAGCAAGTTGCAACATTTTCTTCGCAACTCCGTGAGGACAGCTGTGGATTATGTCACCGGGCTGTTTCAGAAGTATTAGCCAAGTTAAAAGATCCTGATACACAGCTGGAGATCATTGAGATTCTTTTGAAGGCATGCAATTCTGTGGAGAACTATGTCAAGAAGTGCAAGAGGATCGTTTTCCAGTATGGACCACTATTCCTTGTGAATGTAGAGGAGTACCTTGAGAAAACAGACATATGCACCGAACTTCACGCCTGTAATCCAAGCACAGTTAGTACGATGGACGCATCATCGTTGGATATTGGATCCATGCGGGCCGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

245

Amino Acids

27.38

Weight (kDa)

4.65

Isoelectric Point (pI)

42.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SapB_1 PF05184 64 - 99 1e-11 Saposin-like type B, region 1
SapB_1 PF05184 150 - 184 2.2e-09 Saposin-like type B, region 1
SapB_2 PF03489 190 - 223 9.9e-09 Saposin-like type B, region 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 44
AciI CCGC 1 cut(s) 724
AclWI GGATC 4 cut(s) 494, 590, 711, 724
AcsI RAATTY 2 cut(s) 170, 270
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 2 cut(s) 629, 688
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 3 cut(s) 166, 298, 538
AleI CACNNNNGTG 1 cut(s) 326
AluBI AGCT 4 cut(s) 92, 127, 450, 514
AluI AGCT 4 cut(s) 92, 127, 450, 514
AlwI GGATC 4 cut(s) 494, 590, 711, 724
AoxI GGCC 1 cut(s) 726
ApoI RAATTY 2 cut(s) 170, 270
Asp700I GAANNNNTTC 1 cut(s) 302
AspS9I GGNCC 2 cut(s) 599, 726
AsuC2I CCSGG 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 599
BamHI GGATCC 1 cut(s) 716
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 19
BccI CCATC 1 cut(s) 685
BcgI CGANNNNNNTGC 2 cut(s) 565, 599
BcnI CCSGG 1 cut(s) 467
BfaI CTAG 3 cut(s) 93, 111, 356
BfmI CTRYAG 1 cut(s) 369
BfuAI ACCTGC 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 599
BmgT120I GGNCC 2 cut(s) 599, 726
BmiI GGNNCC 3 cut(s) 46, 153, 718
BmrFI CCNGG 1 cut(s) 467
BmrI ACTGGG 1 cut(s) 22
BmsI GCATC 3 cut(s) 97, 224, 707
BmuI ACTGGG 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 536
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 17, 377, 592
BseDI CCNNGG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 233, 249, 266
BseNI ACTGG 3 cut(s) 17, 377, 592
BseRI GAGGAG 2 cut(s) 333, 638
BseYI CCCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 728
BshNI GGYRCC 1 cut(s) 44
BsiSI CCGG 1 cut(s) 466
BsnI GGCC 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 5 cut(s) 261, 499, 519, 582, 716
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 724
BspANI GGCC 1 cut(s) 728
BspCNI CTCAG 3 cut(s) 232, 250, 265
BspLI GGNNCC 3 cut(s) 46, 153, 718
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 4 cut(s) 494, 590, 711, 724
BspT107I GGYRCC 1 cut(s) 44
BsrI ACTGG 3 cut(s) 17, 377, 592
BssECI CCNNGG 1 cut(s) 48
BssMI GATC 5 cut(s) 261, 499, 519, 582, 716
BssT1I CCWWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 2 cut(s) 201, 353
BstC8I GCNNGC 3 cut(s) 311, 544, 726
BstDEI CTNAG 5 cut(s) 128, 219, 252, 258, 735
BstDSI CCRYGG 1 cut(s) 48
BstKTI GATC 5 cut(s) 264, 502, 522, 585, 719
BstMBI GATC 5 cut(s) 261, 499, 519, 582, 716
BstMWI GCNNNNNNNGC 3 cut(s) 98, 107, 221
BstNSI RCATGY 2 cut(s) 119, 546
BstSCI CCNGG 1 cut(s) 465
BstSFI CTRYAG 1 cut(s) 369
BstX2I RGATCY 2 cut(s) 499, 716
BstYI RGATCY 2 cut(s) 499, 716
BsuRI GGCC 1 cut(s) 728
BtgI CCRYGG 1 cut(s) 48
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 3 cut(s) 144, 244, 320
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 311, 544, 726
Cfr13I GGNCC 2 cut(s) 599, 726
CseI GACGC 1 cut(s) 704
Csp6I GTAC 2 cut(s) 628, 687
CviAII CATG 4 cut(s) 49, 116, 543, 721
CviQI GTAC 2 cut(s) 628, 687
DdeI CTNAG 5 cut(s) 128, 219, 252, 258, 735
DpnI GATC 5 cut(s) 263, 501, 521, 584, 718
DpnII GATC 5 cut(s) 261, 499, 519, 582, 716
Eam1104I CTCTTC 2 cut(s) 201, 353
EarI CTCTTC 2 cut(s) 201, 353
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 4 cut(s) 52, 119, 546, 724
FatI CATG 4 cut(s) 48, 115, 542, 720
FauI CCCGC 1 cut(s) 717
FauNDI CATATG 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 19
FspBI CTAG 3 cut(s) 93, 111, 356
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 536
HaeIII GGCC 1 cut(s) 728
HapII CCGG 1 cut(s) 466
HgaI GACGC 1 cut(s) 704
Hin1II CATG 4 cut(s) 52, 119, 546, 724
HincII GTYRAC 1 cut(s) 400
HindII GTYRAC 1 cut(s) 400
HinfI GANTC 3 cut(s) 250, 529, 731
HpaII CCGG 1 cut(s) 466
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 331, 400
Hpy188I TCNGA 3 cut(s) 255, 393, 478
Hpy188III TCNNGA 2 cut(s) 503, 568
Hpy8I GTNNAC 2 cut(s) 331, 400
HpyAV CCTTC 2 cut(s) 388, 532
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 7 cut(s) 142, 195, 215, 419, 546, 576, 651
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 107, 221
HpyF3I CTNAG 5 cut(s) 128, 219, 252, 258, 735
Hsp92II CATG 4 cut(s) 52, 119, 546, 724
Kzo9I GATC 5 cut(s) 261, 499, 519, 582, 716
LmnI GCTCC 3 cut(s) 89, 124, 346
LweI GCATC 3 cut(s) 97, 224, 707
MaeI CTAG 3 cut(s) 93, 111, 356
MaeIII GTNAC 2 cut(s) 319, 461
MalI GATC 5 cut(s) 263, 501, 521, 584, 718
MboI GATC 5 cut(s) 261, 499, 519, 582, 716
MboII GAAGA 4 cut(s) 218, 340, 343, 420
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 2 cut(s) 499, 716
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 5 cut(s) 72, 170, 270, 293, 547
MlyI GAGTC 2 cut(s) 244, 725
MmeI TCCRAC 2 cut(s) 371, 687
MnlI CCTC 8 cut(s) 139, 165, 352, 354, 376, 436, 573, 616
MroXI GAANNNNTTC 1 cut(s) 302
MseI TTAA 1 cut(s) 494
MslI CAYNNNNRTG 2 cut(s) 53, 326
MspA1I CMGCKG 2 cut(s) 450, 514
MspI CCGG 1 cut(s) 466
MspR9I CCNGG 1 cut(s) 467
MunI CAATTG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 98, 107, 221
NciI CCSGG 1 cut(s) 467
NcoI CCATGG 1 cut(s) 48
NdeI CATATG 1 cut(s) 647
NdeII GATC 5 cut(s) 261, 499, 519, 582, 716
NlaIII CATG 4 cut(s) 52, 119, 546, 724
NlaIV GGNNCC 3 cut(s) 46, 153, 718
NmuCI GTSAC 2 cut(s) 319, 461
NspI RCATGY 2 cut(s) 119, 546
OliI CACNNNNGTG 1 cut(s) 326
PaeI GCATGC 1 cut(s) 546
PaqCI CACCTGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 529
PleI GAGTC 2 cut(s) 244, 725
PpsI GAGTC 2 cut(s) 244, 725
PscI ACATGT 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 3 cut(s) 46, 153, 718
PspPI GGNCC 2 cut(s) 599, 726
PsuI RGATCY 2 cut(s) 499, 716
PvuII CAGCTG 2 cut(s) 450, 514
RsaI GTAC 2 cut(s) 629, 688
RsaNI GTAC 2 cut(s) 628, 687
RseI CAYNNNNRTG 2 cut(s) 53, 326
SaqAI TTAA 1 cut(s) 494
Sau3AI GATC 5 cut(s) 261, 499, 519, 582, 716
Sau96I GGNCC 2 cut(s) 599, 726
SchI GAGTC 2 cut(s) 244, 725
ScrFI CCNGG 1 cut(s) 467
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 3 cut(s) 97, 224, 707
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 2 cut(s) 53, 326
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
SphI GCATGC 1 cut(s) 546
Sse9I AATT 5 cut(s) 72, 170, 270, 293, 547
SsiI CCGC 1 cut(s) 724
SspMI CTAG 3 cut(s) 93, 111, 356
StyD4I CCNGG 1 cut(s) 465
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 1 cut(s) 682
TasI AATT 5 cut(s) 72, 170, 270, 293, 547
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 1 cut(s) 494
Tru9I TTAA 1 cut(s) 494
TscAI CASTG 3 cut(s) 144, 244, 320
TseFI GTSAC 2 cut(s) 319, 461
Tsp45I GTSAC 2 cut(s) 319, 461
TspDTI ATGAA 2 cut(s) 58, 198
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 3 cut(s) 144, 244, 320
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 2 cut(s) 170, 270
XceI RCATGY 2 cut(s) 119, 546
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 3 cut(s) 93, 111, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.