Rorug03G0047400

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012842
Physical Location & Seq
Reverse (-)
3648337 .. 3648896
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0047400.1

Sequence Viewer

Length: 459 bp
ATGGGAGGTTCCGTCTCGAAGAAGCGAGCCGAAGAAAGGTCCAGCAGGCATGGCTATGGTCAAGAATGTTTTGATTATGTTTTCAACTACTTATCCCCACAATCCTCATACTTCGATGGATCAACTGCGGATGCACCTAGCAGTTCTACTTCTTCTGAACCAAGTCTTCATACTGCAATTTCACGGCCCCCGCCGTCTGCTCCACGACTACCAGATGCATACGATGCCAAAGAAGAGCGTCAGATGGATATGGCGATGAGGGCCTCTCTGAAAGCACCAAACTTTCCTAGGGCATTTTCTACCTTGAGCATGAACCCTAGCTATGAATACGATGACGAAGAAGAGCGGCAGATCTCCAAGACGGTCAATGCCATATGCTCAACAAACTCCAAATCATTCCAGTTGCGAATTAGTGGAATGTGGGATATGTTTGGAAGTTTCAATGCCAGCAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

152

Amino Acids

16.93

Weight (kDa)

5.39

Isoelectric Point (pI)

64.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 346
AciI CCGC 3 cut(s) 128, 191, 346
AclWI GGATC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 85, 442
AluBI AGCT 1 cut(s) 321
AluI AGCT 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 1 cut(s) 127
AoxI GGCC 2 cut(s) 185, 261
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 3 cut(s) 39, 186, 261
AvaII GGWCC 1 cut(s) 39
AvrII CCTAGG 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 158
BccI CCATC 2 cut(s) 110, 238
BceAI ACGGC 2 cut(s) 178, 200
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 138, 288, 318
BglII AGATCT 1 cut(s) 351
BisI GCNGC 1 cut(s) 347
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 1 cut(s) 348
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 3 cut(s) 39, 186, 261
BmiI GGNNCC 2 cut(s) 10, 188
BmsI GCATC 3 cut(s) 121, 205, 214
BpiI GAAGAC 1 cut(s) 158
BplI GAGNNNNNCTC 2 cut(s) 250, 282
BpuEI CTTGAG 1 cut(s) 325
BsaJI CCNNGG 1 cut(s) 287
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 36
BseNI ACTGG 1 cut(s) 400
BshFI GGCC 2 cut(s) 187, 263
BslI CCNNNNNNNGG 1 cut(s) 36
BsmAI GTCTC 1 cut(s) 19
BsmBI CGTCTC 1 cut(s) 19
BsnI GGCC 2 cut(s) 187, 263
Bsp143I GATC 2 cut(s) 119, 351
BspACI CCGC 3 cut(s) 128, 191, 346
BspANI GGCC 2 cut(s) 187, 263
BspLI GGNNCC 2 cut(s) 10, 188
BspPI GGATC 1 cut(s) 127
BspQI GCTCTTC 2 cut(s) 228, 336
BsrBI CCGCTC 1 cut(s) 346
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 287
BssMI GATC 2 cut(s) 119, 351
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 2 cut(s) 228, 336
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 27, 47, 448
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 2 cut(s) 122, 354
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 119, 351
BstMWI GCNNNNNNNGC 3 cut(s) 51, 224, 260
BstV2I GAAGAC 1 cut(s) 158
BstX2I RGATCY 1 cut(s) 351
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 187, 263
BtgZI GCGATG 1 cut(s) 269
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 27, 47, 448
Cfr13I GGNCC 3 cut(s) 39, 186, 261
CseI GACGC 1 cut(s) 227
CviAII CATG 2 cut(s) 50, 310
CviJI RGCY 5 cut(s) 29, 54, 187, 263, 321
CviKI_1 RGCY 5 cut(s) 29, 54, 187, 263, 321
DpnI GATC 2 cut(s) 121, 353
DpnII GATC 2 cut(s) 119, 351
Eam1104I CTCTTC 2 cut(s) 228, 336
EarI CTCTTC 2 cut(s) 228, 336
Eco130I CCWWGG 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 287
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 2 cut(s) 53, 313
FatI CATG 2 cut(s) 49, 309
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 347
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 347
FspBI CTAG 3 cut(s) 138, 288, 318
GluI GCNGC 1 cut(s) 347
HaeIII GGCC 2 cut(s) 187, 263
HgaI GACGC 1 cut(s) 227
Hin1II CATG 2 cut(s) 53, 313
Hpy188I TCNGA 3 cut(s) 157, 243, 270
Hpy188III TCNNGA 2 cut(s) 16, 62
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 134, 176, 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 224, 260
Hsp92II CATG 2 cut(s) 53, 313
Kzo9I GATC 2 cut(s) 119, 351
LguI GCTCTTC 2 cut(s) 228, 336
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 31, 55, 225, 413
LweI GCATC 3 cut(s) 121, 205, 214
MaeI CTAG 3 cut(s) 138, 288, 318
MalI GATC 2 cut(s) 121, 353
MbiI CCGCTC 1 cut(s) 346
MboI GATC 2 cut(s) 119, 351
MboII GAAGA 7 cut(s) 31, 44, 144, 158, 245, 350, 353
MflI RGATCY 1 cut(s) 351
MluCI AATT 2 cut(s) 177, 408
MnlI CCTC 3 cut(s) 115, 252, 274
Mph1103I ATGCAT 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 54
MwoI GCNNNNNNNGC 3 cut(s) 51, 224, 260
NdeI CATATG 1 cut(s) 374
NdeII GATC 2 cut(s) 119, 351
NlaIII CATG 2 cut(s) 53, 313
NlaIV GGNNCC 2 cut(s) 10, 188
NsiI ATGCAT 1 cut(s) 220
PciSI GCTCTTC 2 cut(s) 228, 336
PkrI GCNGC 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 10, 188
PspPI GGNCC 3 cut(s) 39, 186, 261
PsuI RGATCY 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 54
SapI GCTCTTC 2 cut(s) 228, 336
SatI GCNGC 1 cut(s) 347
Sau3AI GATC 2 cut(s) 119, 351
Sau96I GGNCC 3 cut(s) 39, 186, 261
SetI ASST 5 cut(s) 10, 41, 139, 305, 323
SfaNI GCATC 3 cut(s) 121, 205, 214
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 2 cut(s) 177, 408
SsiI CCGC 3 cut(s) 128, 191, 346
SspMI CTAG 3 cut(s) 138, 288, 318
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 2 cut(s) 17, 114
TasI AATT 2 cut(s) 177, 408
TauI GCSGC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 158, 326, 339
VpaK11BI GGWCC 1 cut(s) 39
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 3 cut(s) 138, 288, 318
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.