Rh3AG104700

Saposin (B) Domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0012842
Physical Location & Seq
Reverse (-)
8753254 .. 8757781
4528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG104700.1

Sequence Viewer

Length: 492 bp
ATGGATATGAGAGTTGGGTTCATAATTCTTTTTGTGCTGGGAGCTAGTTGGGCTTGTGATGCTAGACATGTGGTGGAGCTTAGTTTGTCAGTGCAAGAGGGGGAACCTCAAACTTTGAAAGAATTTTCTGGGAATGAAAATGTTTGCACATTATGTGAAGAGTTTGCATCTCAGGCACTTGATTACATCAGTGAAAACAAGACTCAGACTGAGATCATTGGAATTCTACATAACACCTGCTCTCAATTGAAATCTTTCAGCCAGCAGTGTGTCACTTTGGTGGACTACTATGCTCCTCTCTTCTTCCTAGAGGTTTCCTCTGTAGAACCAGTTGATTTCTGTCGGAAGGTCAACCTATGTCAGCAAGTTGCAACATTTTCTTCGCAACTCCGTGAGGACAGCTGTGGATTATGTCACCGGGCTGTTTCAGAAGTATTAGCCAAGTTAAAAGATCCTGATACACAGGTCTGTACTTTCACCCATAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
SapB_1 SapB_2

Protein Analysis

163

Amino Acids

18.29

Weight (kDa)

4.7

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SapB_1 PF05184 48 - 83 5.2e-12 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 245
Acc36I ACCTGC 1 cut(s) 245
AclWI GGATC 1 cut(s) 446
AcsI RAATTY 2 cut(s) 122, 222
AfaI GTAC 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 67
AgsI TTSAA 2 cut(s) 118, 250
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 3 cut(s) 44, 79, 402
AluI AGCT 3 cut(s) 44, 79, 402
AlwI GGATC 1 cut(s) 446
ApoI RAATTY 2 cut(s) 122, 222
Asp700I GAANNNNTTC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 407, 469
BaeI ACNNNNGTAYC 2 cut(s) 450, 483
BcnI CCSGG 1 cut(s) 419
BfaI CTAG 3 cut(s) 45, 63, 308
BfmI CTRYAG 1 cut(s) 321
BfuAI ACCTGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 419
BmsI GCATC 2 cut(s) 49, 176
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpuMI CCSGG 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 329
BseMII CTCAG 3 cut(s) 185, 201, 218
BseNI ACTGG 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 418
Bsp143I GATC 2 cut(s) 213, 451
BspCNI CTCAG 3 cut(s) 184, 202, 217
BspLI GGNNCC 1 cut(s) 105
BspMI ACCTGC 1 cut(s) 245
BspPI GGATC 1 cut(s) 446
BsrI ACTGG 1 cut(s) 329
BssMI GATC 2 cut(s) 213, 451
Bst6I CTCTTC 2 cut(s) 153, 305
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 4 cut(s) 80, 171, 204, 210
BstKTI GATC 2 cut(s) 216, 454
BstMBI GATC 2 cut(s) 213, 451
BstMWI GCNNNNNNNGC 3 cut(s) 50, 59, 173
BstNSI RCATGY 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 417
BstSFI CTRYAG 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 272
BtsIMutI CAGTG 3 cut(s) 96, 196, 272
BveI ACCTGC 1 cut(s) 245
Cac8I GCNNGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 471
CviAII CATG 1 cut(s) 68
CviJI RGCY 7 cut(s) 44, 53, 79, 261, 402, 422, 440
CviKI_1 RGCY 7 cut(s) 44, 53, 79, 261, 402, 422, 440
CviQI GTAC 1 cut(s) 471
DdeI CTNAG 4 cut(s) 80, 171, 204, 210
DpnI GATC 2 cut(s) 215, 453
DpnII GATC 2 cut(s) 213, 451
Eam1104I CTCTTC 2 cut(s) 153, 305
EarI CTCTTC 2 cut(s) 153, 305
EcoRI GAATTC 1 cut(s) 222
FaeI CATG 1 cut(s) 71
FaiI YATR 9 cut(s) 8, 23, 69, 154, 231, 291, 358, 412, 483
FatI CATG 1 cut(s) 67
FspBI CTAG 3 cut(s) 45, 63, 308
GsaI CCCAGC 1 cut(s) 41
HapII CCGG 1 cut(s) 418
Hin1II CATG 1 cut(s) 71
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 1 cut(s) 202
HpaII CCGG 1 cut(s) 418
HphI GGTGA 2 cut(s) 407, 469
Hpy166II GTNNAC 2 cut(s) 283, 352
Hpy188I TCNGA 3 cut(s) 207, 345, 430
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 283, 352
HpyAV CCTTC 1 cut(s) 340
HpyCH4V TGCA 4 cut(s) 94, 147, 167, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 59, 173
HpyF3I CTNAG 4 cut(s) 80, 171, 204, 210
Hsp92II CATG 1 cut(s) 71
Kzo9I GATC 2 cut(s) 213, 451
LmnI GCTCC 3 cut(s) 41, 76, 298
LpnPI CCDG 9 cut(s) 23, 114, 158, 250, 275, 342, 431, 449, 468
LweI GCATC 2 cut(s) 49, 176
MaeI CTAG 3 cut(s) 45, 63, 308
MaeIII GTNAC 2 cut(s) 271, 413
MalI GATC 2 cut(s) 215, 453
MboI GATC 2 cut(s) 213, 451
MboII GAAGA 4 cut(s) 170, 292, 295, 372
MfeI CAATTG 1 cut(s) 245
MflI RGATCY 1 cut(s) 451
MluCI AATT 5 cut(s) 24, 122, 222, 245, 484
MlyI GAGTC 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 6 cut(s) 91, 117, 304, 306, 328, 388
MroXI GAANNNNTTC 1 cut(s) 254
MseI TTAA 2 cut(s) 446, 490
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 419
MunI CAATTG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 50, 59, 173
NciI CCSGG 1 cut(s) 419
NdeII GATC 2 cut(s) 213, 451
NlaIII CATG 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 271, 413
NspI RCATGY 1 cut(s) 71
OliI CACNNNNGTG 1 cut(s) 278
PaqCI CACCTGC 1 cut(s) 245
PciI ACATGT 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 254
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PscI ACATGT 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 1 cut(s) 402
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 278
SaqAI TTAA 2 cut(s) 446, 490
Sau3AI GATC 2 cut(s) 213, 451
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 419
SetI ASST 9 cut(s) 46, 81, 109, 239, 315, 351, 357, 404, 468
SfaNI GCATC 2 cut(s) 49, 176
SfcI CTRYAG 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 5 cut(s) 24, 122, 222, 245, 484
SspMI CTAG 3 cut(s) 45, 63, 308
StyD4I CCNGG 1 cut(s) 417
TasI AATT 5 cut(s) 24, 122, 222, 245, 484
TatI WGTACW 1 cut(s) 470
Tru1I TTAA 2 cut(s) 446, 490
Tru9I TTAA 2 cut(s) 446, 490
TscAI CASTG 3 cut(s) 96, 196, 272
TseFI GTSAC 2 cut(s) 271, 413
Tsp45I GTSAC 2 cut(s) 271, 413
TspDTI ATGAA 2 cut(s) 10, 150
TspGWI ACGGA 1 cut(s) 380
TspRI CASTG 3 cut(s) 96, 196, 272
XapI RAATTY 2 cut(s) 122, 222
XceI RCATGY 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 254
XspI CTAG 3 cut(s) 45, 63, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.