Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007017.1

Orthogroup ID

OG0012842

Physical Location & Seq

Genomic Coordinates Reverse (-)

8500 .. 11733

Gene Structure 3234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007017.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atgcgctttatgatggccaatgaccaaaatttggggccaaacaccaaactttgccttgacttcattttcaaagtttttgagctatcggaactcctgatatcagaaaagcggataaagggaagggtagctgttgtatataagaagccaacaatcaaagcaacaacgcttcaacaattcaacgccttcgtttgttcaacccaaccccaaatctcaggaacaccaatttcaggcaccatggatatgagagttgggttcataattctttttgtgttgggagctagttgggcttgtgatgctagacatgtggtggagcttagtttgtcagtgcaagagggggaacctcaaactttgaaagaattttctgggaatgaaaatgtttgcacattatgtgaggagtttgcatctcaggcacttgattacatcagtgaaaacaagactcagactgagatcattgcaattctacataacacctgctctcaattgaaatctttcagccagcagtgtgtcactttggtggactactatgctcctctcttcttcctagaggttacctctgtagaaccagttgatttctgtcggaaggtcaacctatgtcagcaagttgcaacattttcttcgcaactccgtgaggacagctgtggattatgtcaccgggctgtttcagaagtattagccaagttaaaagatcctgatacacaggtctgtactttcacccataattattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0001655 GO:0001664 GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0002576 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005102 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005766 GO:0005773 GO:0005774 GO:0005775 GO:0005886 GO:0006629 GO:0006643 GO:0006664 GO:0006665 GO:0006687 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006887 GO:0006955 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0007193 GO:0007275 GO:0008047 GO:0008150 GO:0008152 GO:0008289 GO:0009888 GO:0009894 GO:0009987 GO:0010506 GO:0010876 GO:0012505 GO:0012506 GO:0015711 GO:0015849 GO:0015925 GO:0016020 GO:0016192 GO:0016787 GO:0016798 GO:0019216 GO:0019222 GO:0022414 GO:0023052 GO:0030141 GO:0030154 GO:0030234 GO:0030659 GO:0030667 GO:0030850 GO:0030855 GO:0031090 GO:0031323 GO:0031329 GO:0031406 GO:0031410 GO:0031974 GO:0031982 GO:0032501 GO:0032502 GO:0032940 GO:0033036 GO:0033218 GO:0033293 GO:0035265 GO:0035577 GO:0035594 GO:0035627 GO:0036094 GO:0036230 GO:0040007 GO:0042119 GO:0042582 GO:0042802 GO:0042803 GO:0042886 GO:0043085 GO:0043167 GO:0043168 GO:0043177 GO:0043202 GO:0043208 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044093 GO:0044237 GO:0044238 GO:0044255 GO:0044421 GO:0044422 GO:0044424 GO:0044433 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046625 GO:0046836 GO:0046903 GO:0046942 GO:0046983 GO:0048513 GO:0048589 GO:0048608 GO:0048731 GO:0048732 GO:0048856 GO:0048869 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0051861 GO:0060429 GO:0060736 GO:0060742 GO:0061458 GO:0065007 GO:0065009 GO:0070013 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0080090 GO:0097001 GO:0097367 GO:0097708 GO:0098588 GO:0098772 GO:0098805 GO:0098852 GO:0099503 GO:1901135 GO:1901264 GO:1901564 GO:1903509 GO:1905572 GO:1905573 GO:1905574 GO:1905575 GO:1905576 GO:1905577

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

SapB_1 SapB_2

Protein Analysis

241

Amino Acids

27.06

Weight (kDa)

5.43

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51730
fragaria_vesca	FvH4_6g10220 FvH4_6g10220
malus_domestica	MD04G1171500.v1.1 MD12G1184900.v1.1
prunus_persica	Prupe.6G290000_v2.0.a1 Prupe.6G290000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460961
rosa_laevigata	RLG00000024963
rosa_multiflora	Rmu_sc0007017.1_g000002
rosa_rugosa	Rorug03G0047200 Rorug03G0047200 Rorug03G0047300 Rorug03G0047300 Rorug03G0047400
rosa_samantha	Rh3AG104700 Rh3CG110000
rosa_wichuraiana	Rw3G008950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	230
AccB7I	CCANNNNNTGG	1 cut(s)	31
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	28, 356
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	2 cut(s)	31, 227
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	70, 170, 178, 195, 352, 484
AleI	CACNNNNGTG	1 cut(s)	512
AluBI	AGCT	5 cut(s)	82, 128, 278, 313, 636
AluI	AGCT	5 cut(s)	82, 128, 278, 313, 636
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	2 cut(s)	15, 35
ApoI	RAATTY	2 cut(s)	28, 356
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	641, 703
BaeI	ACNNNNGTAYC	2 cut(s)	684, 717
BalI	TGGCCA	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	230
BccI	CCATC	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	653
BfaI	CTAG	3 cut(s)	279, 297, 542
BfmI	CTRYAG	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	479
Bme1390I	CCNGG	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	3 cut(s)	36, 232, 339
BmrFI	CCNGG	1 cut(s)	653
BmsI	GCATC	2 cut(s)	283, 410
BplI	GAGNNNNNCTC	2 cut(s)	536, 568
BpuMI	CCSGG	1 cut(s)	653
BsaJI	CCNNGG	1 cut(s)	234
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 227
Bse1I	ACTGG	1 cut(s)	563
Bse3DI	GCAATG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	234
BseLI	CCNNNNNNNGG	2 cut(s)	31, 227
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	4 cut(s)	225, 419, 435, 452
BseNI	ACTGG	1 cut(s)	563
BseRI	GAGGAG	2 cut(s)	407, 519
BshFI	GGCC	2 cut(s)	17, 37
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	652
BslI	CCNNNNNNNGG	2 cut(s)	31, 227
BsnI	GGCC	2 cut(s)	17, 37
Bsp143I	GATC	2 cut(s)	447, 685
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	2 cut(s)	17, 37
BspCNI	CTCAG	4 cut(s)	224, 418, 436, 451
BspLI	GGNNCC	3 cut(s)	36, 232, 339
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	680
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	450
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	447, 685
BssT1I	CCWWGG	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	5 cut(s)	211, 314, 405, 438, 444
BstDSI	CCRYGG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	547
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	450, 688
BstMBI	GATC	2 cut(s)	447, 685
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 293, 407
BstNSI	RCATGY	1 cut(s)	305
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuRI	GGCC	2 cut(s)	17, 37
BtgI	CCRYGG	1 cut(s)	234
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	3 cut(s)	330, 430, 506
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	1 cut(s)	497
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	2 cut(s)	235, 302
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	5 cut(s)	211, 314, 405, 438, 444
DpnI	GATC	2 cut(s)	449, 687
DpnII	GATC	2 cut(s)	447, 685
EaeI	YGGCCR	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	539
EarI	CTCTTC	1 cut(s)	539
Eco130I	CCWWGG	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	99
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	238, 305
FatI	CATG	2 cut(s)	234, 301
FspBI	CTAG	3 cut(s)	279, 297, 542
GlaI	GCGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	17, 37
HapII	CCGG	1 cut(s)	652
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	238, 305
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	652
HphI	GGTGA	2 cut(s)	641, 703
Hpy166II	GTNNAC	2 cut(s)	517, 586
Hpy188I	TCNGA	5 cut(s)	88, 103, 441, 579, 664
Hpy188III	TCNNGA	3 cut(s)	94, 213, 689
Hpy8I	GTNNAC	2 cut(s)	517, 586
HpyAV	CCTTC	3 cut(s)	114, 193, 574
HpyCH4V	TGCA	5 cut(s)	328, 381, 401, 455, 605
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 293, 407
HpyF3I	CTNAG	5 cut(s)	211, 314, 405, 438, 444
Hsp92II	CATG	2 cut(s)	238, 305
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	447, 685
LmnI	GCTCC	3 cut(s)	275, 310, 532
LweI	GCATC	2 cut(s)	283, 410
MaeI	CTAG	3 cut(s)	279, 297, 542
MaeIII	GTNAC	3 cut(s)	505, 547, 647
MalI	GATC	2 cut(s)	449, 687
MboI	GATC	2 cut(s)	447, 685
MboII	GAAGA	3 cut(s)	526, 529, 606
MfeI	CAATTG	1 cut(s)	479
MflI	RGATCY	1 cut(s)	685
MlsI	TGGCCA	1 cut(s)	17
MluCI	AATT	8 cut(s)	28, 173, 222, 258, 356, 456, 479, 718
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	557
MnlI	CCTC	7 cut(s)	325, 351, 385, 538, 540, 562, 622
Mox20I	TGGCCA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	2 cut(s)	680, 724
MslI	CAYNNNNRTG	2 cut(s)	239, 512
Msp20I	TGGCCA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	636
MspI	CCGG	1 cut(s)	652
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	1 cut(s)	479
MwoI	GCNNNNNNNGC	3 cut(s)	284, 293, 407
NciI	CCSGG	1 cut(s)	653
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	447, 685
NlaIII	CATG	2 cut(s)	238, 305
NlaIV	GGNNCC	3 cut(s)	36, 232, 339
NmuCI	GTSAC	2 cut(s)	505, 647
NspI	RCATGY	1 cut(s)	305
OliI	CACNNNNGTG	1 cut(s)	512
PaqCI	CACCTGC	1 cut(s)	479
PciI	ACATGT	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	547
PspN4I	GGNNCC	3 cut(s)	36, 232, 339
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	685
PvuII	CAGCTG	1 cut(s)	636
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	2 cut(s)	239, 512
SaqAI	TTAA	2 cut(s)	680, 724
Sau3AI	GATC	2 cut(s)	447, 685
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	283, 410
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	2 cut(s)	239, 512
Sse9I	AATT	8 cut(s)	28, 173, 222, 258, 356, 456, 479, 718
SsiI	CCGC	1 cut(s)	109
SspMI	CTAG	3 cut(s)	279, 297, 542
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	1 cut(s)	234
TasI	AATT	8 cut(s)	28, 173, 222, 258, 356, 456, 479, 718
TatI	WGTACW	1 cut(s)	704
Tru1I	TTAA	2 cut(s)	680, 724
Tru9I	TTAA	2 cut(s)	680, 724
TscAI	CASTG	3 cut(s)	330, 430, 506
TseFI	GTSAC	2 cut(s)	505, 647
Tsp45I	GTSAC	2 cut(s)	505, 647
TspDTI	ATGAA	3 cut(s)	52, 244, 384
TspGWI	ACGGA	1 cut(s)	614
TspRI	CASTG	3 cut(s)	330, 430, 506
Van91I	CCANNNNNTGG	1 cut(s)	31
XapI	RAATTY	2 cut(s)	28, 356
XceI	RCATGY	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	3 cut(s)	279, 297, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.