Prupe.6G341200_v2.0.a1

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015645
Physical Location & Seq
Reverse (-)
29470511 .. 29472130
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G341200.1

Sequence Viewer

Length: 1008 bp
ATGGGAAAGGCAAGCAAATGGATTATAAACTTTCTGGTGGGAAAGCAGGAAAAAAAGATTAACCAAACCAATGTTTCGATTTCGACTGAGCATCCTTCTACTGCTACCAAGCCAGGGACACCAAAAGTGAAGCGAAGATGGAGCTTTGGAAGGTTAGCAGGCAAAGAGGCATGCCACAGGCCCTCCAAATCTGTTGATTCAATTGACACCACTATATTGCCTTTGCCTTTGAAGGCTCAGCAGAATCATGCCTTGACATTGGCTGTGGTACCAAGAGATGTTGACGATGCTGCTGCCACAAGGATTCAAGCTGCCTTCCGTTCTCATTTGGCAAGGAAGGCTTTACATGCCTTGAAGGGTCTTGTTAAGTTACAAGCACTCATAAGAGGTCACATCGTGAGGAAACAAACAACTGCCACTATAATGCAGATGCATGCGTTGATGGCAATCCAGGTTAGAGCTCGGTTTAAGAGAATTCAGATGGCAGAGGAAGCACAGCAAGCTAATAAAAAGCAATTGACGATTCAAAGAGACCATGGGGTGCATAGGCGACGTCAATACGAGGAGCCCTCCTTTCCAACAGCAAATAGTCCCTGGAACTATCCTGCAGCGTCTAAACCAAAACCAACAAGACCCCCTTTCACTTTTCAACAGCAGGATTATGGAGACCCTGCGTGTTATGACTACACATTCAAGCCAAGTTACATGACCAACACGAAATCTTCGAAGGCAAAAGTAAGGTCACAGAGTGAACCAAAGCAACGGCCGGAAGGGAGCACAAAGCACAAAACCAAGCATACAAAATCATGGGATGCAACAGATGGTCCTATGGAGGATCAAGTTCTGAAACGTTCGTCTTCACAGTTCAAACCCAACGGTCATAAAAACCATGATCCCTGGTTTGTTAAGCTCTACAAGTCAAGAAGGTTGTTTGAGGAGGACAAGCATGCAAGCACTGGTCATTCCAATTATAATGAATCTCTGGCAGCATTTGAGGTAAAAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

336

Amino Acids

38.08

Weight (kDa)

10.23

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015645)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03280
malus_domestica MD04G1222100.v1.1 MD12G1238300.v1.1
prunus_persica Prupe.6G341200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451751
rosa_laevigata RLG00000025654
rosa_multiflora Rmu_sc0004924.1_g000003 Rmu_sc0009360.1_g000003
rosa_roxburghii Rroxscaffold_164G00436340 Rroxscaffold_6G00428950
rosa_rugosa Rorug02G0635600
rosa_samantha Rh3AG037400 Rh3BG038500 Rh3CG037000 Rh3DG037700
rosa_wichuraiana Rw3G002790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 26, 972
AatII GACGTC 1 cut(s) 556
Acc65I GGTACC 1 cut(s) 268
AccB1I GGYRCC 1 cut(s) 268
AclI AACGTT 1 cut(s) 850
AclWI GGATC 2 cut(s) 843, 887
AcoI YGGCCR 1 cut(s) 764
AcsI RAATTY 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 553
AdeI CACNNNGTG 2 cut(s) 397, 749
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 8 cut(s) 201, 232, 308, 355, 527, 650, 694, 868
AjnI CCWGG 4 cut(s) 112, 450, 593, 896
AluBI AGCT 5 cut(s) 144, 311, 461, 503, 910
AluI AGCT 5 cut(s) 144, 311, 461, 503, 910
Alw21I GWGCWC 2 cut(s) 463, 779
Alw26I GTCTC 2 cut(s) 525, 660
AlwI GGATC 2 cut(s) 843, 887
AoxI GGCC 2 cut(s) 179, 764
ApeKI GCWGC 5 cut(s) 290, 293, 311, 608, 986
ApoI RAATTY 1 cut(s) 474
ArsI GACNNNNNNTTYG 2 cut(s) 725, 757
Asp718I GGTACC 1 cut(s) 268
AspS9I GGNCC 2 cut(s) 180, 824
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 824
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 463, 570
BbsI GAAGAC 1 cut(s) 849
Bbv12I GWGCWC 2 cut(s) 463, 779
BbvI GCAGC 5 cut(s) 277, 280, 298, 620, 998
BccI CCATC 4 cut(s) 132, 436, 475, 815
BceAI ACGGC 1 cut(s) 779
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 4 cut(s) 114, 452, 595, 898
BcoDI GTCTC 2 cut(s) 525, 660
BfmI CTRYAG 1 cut(s) 606
BisI GCNGC 5 cut(s) 291, 294, 312, 609, 987
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 292, 295, 313, 610, 988
Bme1390I CCNGG 4 cut(s) 114, 452, 595, 898
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 2 cut(s) 180, 824
BmiI GGNNCC 2 cut(s) 270, 567
BmrFI CCNGG 4 cut(s) 114, 452, 595, 898
BmsI GCATC 4 cut(s) 100, 277, 420, 802
BpiI GAAGAC 1 cut(s) 849
BplI GAGNNNNNCTC 2 cut(s) 554, 586
Bpu1102I GCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 725
BsaBI GATNNNNATC 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 553
BsaI GGTCTC 2 cut(s) 525, 660
BsaJI CCNNGG 4 cut(s) 113, 535, 593, 896
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 961
Bse8I GATNNNNATC 1 cut(s) 446
BseBI CCWGG 4 cut(s) 114, 452, 595, 898
BseDI CCNNGG 4 cut(s) 113, 535, 593, 896
BseGI GGATG 2 cut(s) 91, 817
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 78, 251
BseNI ACTGG 1 cut(s) 961
BseRI GAGGAG 2 cut(s) 578, 950
BseX3I CGGCCG 1 cut(s) 764
BseXI GCAGC 5 cut(s) 277, 280, 298, 620, 998
Bsh1285I CGRYCG 1 cut(s) 767
BshFI GGCC 2 cut(s) 181, 766
BshNI GGYRCC 1 cut(s) 268
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 2 cut(s) 463, 779
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 2 cut(s) 130, 576
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 525, 660
BsmFI GGGAC 2 cut(s) 130, 576
BsnI GGCC 2 cut(s) 181, 766
Bso31I GGTCTC 2 cut(s) 525, 660
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 3 cut(s) 463, 570, 779
Bsp143I GATC 2 cut(s) 835, 892
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 535
BspANI GGCC 2 cut(s) 181, 766
BspCNI CTCAG 2 cut(s) 79, 250
BspLI GGNNCC 2 cut(s) 270, 567
BspMAI CTGCAG 1 cut(s) 610
BspPI GGATC 2 cut(s) 843, 887
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 1 cut(s) 268
BspTNI GGTCTC 2 cut(s) 525, 660
BsrI ACTGG 1 cut(s) 961
BssECI CCNNGG 4 cut(s) 113, 535, 593, 896
BssMI GATC 2 cut(s) 835, 892
BssNI GRCGYC 1 cut(s) 553
BssT1I CCWWGG 1 cut(s) 535
Bst2UI CCWGG 4 cut(s) 114, 452, 595, 898
Bst4CI ACNGT 2 cut(s) 864, 878
BstACI GRCGYC 1 cut(s) 553
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 7 cut(s) 13, 160, 172, 435, 501, 948, 952
BstDEI CTNAG 2 cut(s) 87, 237
BstDSI CCRYGG 1 cut(s) 535
BstF5I GGATG 2 cut(s) 91, 817
BstKTI GATC 2 cut(s) 838, 895
BstMAI GTCTC 2 cut(s) 525, 660
BstMBI GATC 2 cut(s) 835, 892
BstMCI CGRYCG 1 cut(s) 767
BstMWI GCNNNNNNNGC 5 cut(s) 338, 347, 443, 491, 500
BstNI CCWGG 4 cut(s) 114, 452, 595, 898
BstNSI RCATGY 4 cut(s) 174, 350, 437, 950
BstSCI CCNGG 4 cut(s) 112, 450, 593, 896
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 5 cut(s) 277, 280, 298, 620, 998
BstV2I GAAGAC 1 cut(s) 849
BstZI CGGCCG 1 cut(s) 764
BsuRI GGCC 2 cut(s) 181, 766
BtgI CCRYGG 1 cut(s) 535
BtsCI GGATG 2 cut(s) 91, 817
BtsIMutI CAGTG 1 cut(s) 954
Cac8I GCNNGC 7 cut(s) 13, 160, 172, 435, 501, 948, 952
Cfr13I GGNCC 2 cut(s) 180, 824
CseI GACGC 1 cut(s) 600
Csp6I GTAC 1 cut(s) 269
CviAII CATG 9 cut(s) 171, 248, 347, 434, 536, 706, 807, 890, 947
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 2 cut(s) 87, 237
DpnI GATC 2 cut(s) 837, 894
DpnII GATC 2 cut(s) 835, 892
DraIII CACNNNGTG 2 cut(s) 397, 749
EaeI YGGCCR 1 cut(s) 764
EagI CGGCCG 1 cut(s) 764
Ecl136II GAGCTC 1 cut(s) 461
EclXI CGGCCG 1 cut(s) 764
Eco130I CCWWGG 1 cut(s) 535
Eco24I GRGCYC 2 cut(s) 463, 570
Eco31I GGTCTC 2 cut(s) 525, 660
Eco47I GGWCC 1 cut(s) 824
Eco52I CGGCCG 1 cut(s) 764
Eco53kI GAGCTC 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 474
EcoRII CCWGG 4 cut(s) 112, 450, 593, 896
EcoT14I CCWWGG 1 cut(s) 535
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 2 cut(s) 463, 570
ErhI CCWWGG 1 cut(s) 535
FaeI CATG 9 cut(s) 174, 251, 350, 437, 539, 709, 810, 893, 950
FalI AAGNNNNNCTT 4 cut(s) 325, 357, 622, 654
FaqI GGGAC 2 cut(s) 130, 576
FatI CATG 9 cut(s) 170, 247, 346, 433, 535, 705, 806, 889, 946
Fnu4HI GCNGC 5 cut(s) 291, 294, 312, 609, 987
FokI GGATG 2 cut(s) 78, 824
FriOI GRGCYC 2 cut(s) 463, 570
Fsp4HI GCNGC 5 cut(s) 291, 294, 312, 609, 987
GluI GCNGC 5 cut(s) 291, 294, 312, 609, 987
HaeIII GGCC 2 cut(s) 181, 766
HapII CCGG 1 cut(s) 767
HgaI GACGC 1 cut(s) 600
Hin1I GRCGYC 1 cut(s) 553
Hin1II CATG 9 cut(s) 174, 251, 350, 437, 539, 709, 810, 893, 950
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HinfI GANTC 5 cut(s) 197, 244, 304, 523, 977
HpaII CCGG 1 cut(s) 767
Hpy166II GTNNAC 2 cut(s) 283, 752
Hpy188I TCNGA 2 cut(s) 480, 846
Hpy188III TCNNGA 2 cut(s) 397, 921
Hpy8I GTNNAC 2 cut(s) 283, 752
Hpy99I CGWCG 1 cut(s) 555
HpyAV CCTTC 9 cut(s) 105, 144, 226, 325, 331, 349, 721, 764, 918
HpyCH4III ACNGT 2 cut(s) 864, 878
HpyCH4IV ACGT 2 cut(s) 553, 850
HpyCH4V TGCA 6 cut(s) 427, 433, 544, 608, 815, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 347, 443, 491, 500
HpyF3I CTNAG 2 cut(s) 87, 237
HpySE526I ACGT 2 cut(s) 553, 850
Hsp92I GRCGYC 1 cut(s) 553
Hsp92II CATG 9 cut(s) 174, 251, 350, 437, 539, 709, 810, 893, 950
KpnI GGTACC 1 cut(s) 272
Kzo9I GATC 2 cut(s) 835, 892
LmnI GCTCC 3 cut(s) 141, 565, 774
Lsp1109I GCAGC 5 cut(s) 277, 280, 298, 620, 998
LweI GCATC 4 cut(s) 100, 277, 420, 802
MaeII ACGT 2 cut(s) 553, 850
MaeIII GTNAC 4 cut(s) 369, 389, 701, 741
MalI GATC 2 cut(s) 837, 894
MboI GATC 2 cut(s) 835, 892
MboII GAAGA 3 cut(s) 147, 714, 849
MfeI CAATTG 2 cut(s) 201, 515
MhlI GDGCHC 3 cut(s) 463, 570, 779
MluCI AATT 4 cut(s) 201, 474, 515, 967
MmeI TCCRAC 1 cut(s) 602
Mph1103I ATGCAT 1 cut(s) 435
MseI TTAA 4 cut(s) 60, 366, 468, 906
MslI CAYNNNNRTG 1 cut(s) 422
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 4 cut(s) 114, 452, 595, 898
MunI CAATTG 2 cut(s) 201, 515
MvaI CCWGG 4 cut(s) 114, 452, 595, 898
MwoI GCNNNNNNNGC 5 cut(s) 338, 347, 443, 491, 500
NcoI CCATGG 1 cut(s) 535
NdeII GATC 2 cut(s) 835, 892
NlaIII CATG 9 cut(s) 174, 251, 350, 437, 539, 709, 810, 893, 950
NlaIV GGNNCC 2 cut(s) 270, 567
NmuCI GTSAC 2 cut(s) 389, 741
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 4 cut(s) 174, 350, 437, 950
NspV TTCGAA 1 cut(s) 725
PaeI GCATGC 3 cut(s) 174, 437, 950
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PfeI GAWTC 5 cut(s) 197, 244, 304, 523, 977
PkrI GCNGC 5 cut(s) 292, 295, 313, 610, 988
PsiI TTATAA 2 cut(s) 26, 972
Psp124BI GAGCTC 1 cut(s) 463
Psp1406I AACGTT 1 cut(s) 850
Psp6I CCWGG 4 cut(s) 112, 450, 593, 896
PspGI CCWGG 4 cut(s) 112, 450, 593, 896
PspN4I GGNNCC 2 cut(s) 270, 567
PspPI GGNCC 2 cut(s) 180, 824
PstI CTGCAG 1 cut(s) 610
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 422
SacI GAGCTC 1 cut(s) 463
SaqAI TTAA 4 cut(s) 60, 366, 468, 906
SatI GCNGC 5 cut(s) 291, 294, 312, 609, 987
Sau3AI GATC 2 cut(s) 835, 892
Sau96I GGNCC 2 cut(s) 180, 824
ScrFI CCNGG 4 cut(s) 114, 452, 595, 898
SduI GDGCHC 3 cut(s) 463, 570, 779
SfaNI GCATC 4 cut(s) 100, 277, 420, 802
SfcI CTRYAG 1 cut(s) 606
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 1 cut(s) 824
SmiMI CAYNNNNRTG 1 cut(s) 422
SphI GCATGC 3 cut(s) 174, 437, 950
Sse9I AATT 4 cut(s) 201, 474, 515, 967
SstI GAGCTC 1 cut(s) 463
StyD4I CCNGG 4 cut(s) 112, 450, 593, 896
StyI CCWWGG 1 cut(s) 535
TaaI ACNGT 2 cut(s) 864, 878
TaiI ACGT 2 cut(s) 556, 853
TaqI TCGA 3 cut(s) 77, 83, 725
TasI AATT 4 cut(s) 201, 474, 515, 967
TfiI GAWTC 5 cut(s) 197, 244, 304, 523, 977
Tru1I TTAA 4 cut(s) 60, 366, 468, 906
Tru9I TTAA 4 cut(s) 60, 366, 468, 906
TscAI CASTG 1 cut(s) 961
TseFI GTSAC 2 cut(s) 389, 741
TseI GCWGC 5 cut(s) 290, 293, 311, 608, 986
Tsp45I GTSAC 2 cut(s) 389, 741
TspDTI ATGAA 1 cut(s) 990
TspGWI ACGGA 1 cut(s) 308
TspRI CASTG 1 cut(s) 961
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 1 cut(s) 474
XceI RCATGY 4 cut(s) 174, 350, 437, 950
ZraI GACGTC 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.