Rw3G002790

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015645
Physical Location & Seq
Forward (+)
2478595 .. 2481520
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002790.1

Sequence Viewer

Length: 1161 bp
ATGGGGAAGGCAAGCAAATGGATTCTGAACTTTCTGATAGGAAAGCAGGAGAAGAAGAAGAATGAAGGTCTTTTGACTGAGAAATGCGTTCCCAAAGTTAAGCGAAGATGGAGCTTTGGAAGATCATCCCACAGGGTTTCAAAATCTGTTGATTCGATTGACACCACCAAATTGCCATTGAAGCCTCAGCTGAATCAGGCCGTCTGGGTATCAATACAGGCTGAGAATGCTGCTGCTACAAGGATCCAAGCAGCCTTTCGTGCTCATTGGAAGGCTTTACATGCCCTGAAGAGTCTAGTGAAGTTACAAGCACTCATAAGAGGTCATTTTGTGAGGAAACAAACTAATGCTACTATGAGACGCATGCATGCTTTGTTGGCAATCCAGGTTCGAGCTCGCTGTCAGAGAATTCAGATGGCCGAGGCAGATGTACAGGAAAATAAAAGGCAGTCGTCCATTAGAAGAGGTTCCCCTCATGCCAATGAAGTTCATAGGAAGAAAATCTATATGATTTCGAATGAATCACGAAGAGTTTTGAAAAGTACAAGTGACTACCTGAATCATTCACAAACTGATCAGAGGATTGATCATAGCTACACATCATTTTCTTCTGATCGTCTGTCCATCTCTAACCGACACAAATACAATGACACCTTGTTCAGAACACCAGAAACTAGTCCCCGAATGCCTTCACCCAAAACGAAACCAACTAGACCTTACATCCCTTTTCAACAGCATGATTCTCTAGTCGAGCCTACATGTTATGACTACTCATTCATGCCTAGTTACATGGCCAACACAGAATCTTCGACGGCCAAAAAAGTCAGGTCACAGAGTGAACCTAAGCAACGACCTGATGGGAGCAACAAGCATAAAAGCAAGCATACAGAATTAGTAGATTCAACAGATGAACAGTTTCTGAGACGTTCATCTTCACAGTTCAAAACCAATGATCACAAAAACCATGATCCCTGGTTTGGTAAGCTCTACAGACCAAGAAGATTGTTTGAGGAGAACAAGTATGATTACATTAATCCAAGTCATTCCAAGTATACTGAATCTCTAGCTGCAGAGGATTGCGTCCAATCTCCAAACAACGTACATTTTGCGCACAAAAAGTGTTCCACCAACTTTGTTATTCAAACAAGAATTGCGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

386

Amino Acids

44.83

Weight (kDa)

10.11

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 242 - 301 2.7e-08 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015645)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03280
malus_domestica MD04G1222100.v1.1 MD12G1238300.v1.1
prunus_persica Prupe.6G341200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451751
rosa_laevigata RLG00000025654
rosa_multiflora Rmu_sc0004924.1_g000003 Rmu_sc0009360.1_g000003
rosa_roxburghii Rroxscaffold_164G00436340 Rroxscaffold_6G00428950
rosa_rugosa Rorug02G0635600
rosa_samantha Rh3AG037400 Rh3BG038500 Rh3CG037000 Rh3DG037700
rosa_wichuraiana Rw3G002790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1110
AccI GTMKAC 1 cut(s) 1052
AclWI GGATC 3 cut(s) 238, 251, 962
AcoI YGGCCR 3 cut(s) 417, 792, 813
AcsI RAATTY 1 cut(s) 408
AcuI CTGAAG 1 cut(s) 308
AdeI CACNNNGTG 1 cut(s) 836
AfaI GTAC 3 cut(s) 432, 544, 1101
AfiI CCNNNNNNNGG 1 cut(s) 977
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 7 cut(s) 141, 181, 538, 731, 903, 943, 1142
AhlI ACTAGT 1 cut(s) 674
AjnI CCWGG 2 cut(s) 384, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 6 cut(s) 114, 190, 395, 594, 985, 1067
AluI AGCT 6 cut(s) 114, 190, 395, 594, 985, 1067
Alw21I GWGCWC 2 cut(s) 265, 397
Alw26I GTCTC 2 cut(s) 352, 916
AlwI GGATC 3 cut(s) 238, 251, 962
AlwNI CAGNNNCTG 1 cut(s) 919
AoxI GGCC 4 cut(s) 198, 417, 792, 813
ApeKI GCWGC 4 cut(s) 230, 233, 251, 1067
ApoI RAATTY 1 cut(s) 408
AseI ATTAAT 1 cut(s) 1032
Asp700I GAANNNNTTC 3 cut(s) 466, 688, 915
AspLEI GCGC 1 cut(s) 1111
AsuHPI GGTGA 1 cut(s) 684
AsuII TTCGAA 1 cut(s) 515
BalI TGGCCA 1 cut(s) 794
BamHI GGATCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 397
Bbv12I GWGCWC 2 cut(s) 265, 397
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 217, 220, 263, 1054
BccI CCATC 4 cut(s) 102, 409, 632, 851
BceAI ACGGC 2 cut(s) 185, 828
BciT130I CCWGG 2 cut(s) 386, 973
BclI TGATCA 3 cut(s) 574, 586, 952
BcoDI GTCTC 2 cut(s) 352, 916
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 6 cut(s) 296, 675, 711, 746, 783, 1064
BfmI CTRYAG 2 cut(s) 988, 1068
BisI GCNGC 4 cut(s) 231, 234, 252, 1068
BlsI GCNGC 4 cut(s) 232, 235, 253, 1069
Bme1390I CCNGG 2 cut(s) 386, 973
BmiI GGNNCC 2 cut(s) 245, 469
BmrFI CCNGG 2 cut(s) 386, 973
Bpu10I CCTNAGC 2 cut(s) 186, 843
Bpu14I TTCGAA 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 420, 971
BsaXI ACNNNNNCTCC 2 cut(s) 1004, 1034
Bsc4I CCNNNNNNNGG 1 cut(s) 977
BseBI CCWGG 2 cut(s) 386, 973
BseDI CCNNGG 2 cut(s) 420, 971
BseGI GGATG 2 cut(s) 125, 720
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMII CTCAG 4 cut(s) 69, 200, 213, 911
BseRI GAGGAG 1 cut(s) 1025
BseXI GCAGC 4 cut(s) 217, 220, 263, 1054
BshFI GGCC 4 cut(s) 200, 419, 794, 815
BsiHKAI GWGCWC 2 cut(s) 265, 397
BslFI GGGAC 1 cut(s) 663
BslI CCNNNNNNNGG 1 cut(s) 977
BsmAI GTCTC 2 cut(s) 352, 916
BsmBI CGTCTC 2 cut(s) 352, 916
BsmFI GGGAC 1 cut(s) 663
BsmI GAATGC 2 cut(s) 232, 690
BsnI GGCC 4 cut(s) 200, 419, 794, 815
Bsp119I TTCGAA 1 cut(s) 515
Bsp1286I GDGCHC 2 cut(s) 265, 397
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
BspANI GGCC 4 cut(s) 200, 419, 794, 815
BspCNI CTCAG 4 cut(s) 70, 199, 214, 912
BspLI GGNNCC 2 cut(s) 245, 469
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 3 cut(s) 238, 251, 962
BspT104I TTCGAA 1 cut(s) 515
BsrGI TGTACA 1 cut(s) 430
BssECI CCNNGG 2 cut(s) 420, 971
BssMI GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
BssNAI GTATAC 1 cut(s) 1053
Bst1107I GTATAC 1 cut(s) 1053
Bst2UI CCWGG 2 cut(s) 386, 973
Bst4CI ACNGT 2 cut(s) 915, 939
Bst6I CTCTTC 3 cut(s) 284, 457, 523
BstAUI TGTACA 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 13, 365, 369, 397, 881
BstDEI CTNAG 5 cut(s) 78, 186, 222, 843, 920
BstF5I GGATG 2 cut(s) 125, 720
BstHHI GCGC 1 cut(s) 1111
BstKTI GATC 7 cut(s) 125, 246, 577, 589, 616, 955, 970
BstMAI GTCTC 2 cut(s) 352, 916
BstMBI GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
BstMWI GCNNNNNNNGC 5 cut(s) 181, 227, 260, 281, 377
BstNI CCWGG 2 cut(s) 386, 973
BstNSI RCATGY 4 cut(s) 284, 367, 371, 762
BstSCI CCNGG 2 cut(s) 384, 971
BstSFI CTRYAG 2 cut(s) 988, 1068
BstV1I GCAGC 4 cut(s) 217, 220, 263, 1054
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BstZ17I GTATAC 1 cut(s) 1053
BsuRI GGCC 4 cut(s) 200, 419, 794, 815
BtsCI GGATG 2 cut(s) 125, 720
Cac8I GCNNGC 5 cut(s) 13, 365, 369, 397, 881
CaiI CAGNNNCTG 1 cut(s) 919
CfoI GCGC 1 cut(s) 1111
CseI GACGC 2 cut(s) 369, 1069
Csp6I GTAC 3 cut(s) 431, 543, 1100
CspCI CAANNNNNGTGG 2 cut(s) 1114, 1149
CviAII CATG 9 cut(s) 281, 364, 368, 476, 737, 759, 778, 790, 965
CviQI GTAC 3 cut(s) 431, 543, 1100
DdeI CTNAG 5 cut(s) 78, 186, 222, 843, 920
DpnI GATC 7 cut(s) 124, 245, 576, 588, 615, 954, 969
DpnII GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
DraIII CACNNNGTG 1 cut(s) 836
EaeI YGGCCR 3 cut(s) 417, 792, 813
Eam1104I CTCTTC 3 cut(s) 284, 457, 523
EarI CTCTTC 3 cut(s) 284, 457, 523
Ecl136II GAGCTC 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 384, 971
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 397
Esp3I CGTCTC 2 cut(s) 352, 916
FaeI CATG 9 cut(s) 284, 367, 371, 479, 740, 762, 781, 793, 968
FaqI GGGAC 1 cut(s) 663
FatI CATG 9 cut(s) 280, 363, 367, 475, 736, 758, 777, 789, 964
FbaI TGATCA 3 cut(s) 574, 586, 952
FblI GTMKAC 1 cut(s) 1052
Fnu4HI GCNGC 4 cut(s) 231, 234, 252, 1068
FokI GGATG 2 cut(s) 112, 707
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 4 cut(s) 231, 234, 252, 1068
FspBI CTAG 6 cut(s) 296, 675, 711, 746, 783, 1064
FspI TGCGCA 1 cut(s) 1110
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 4 cut(s) 231, 234, 252, 1068
HaeIII GGCC 4 cut(s) 200, 419, 794, 815
HgaI GACGC 2 cut(s) 369, 1069
HhaI GCGC 1 cut(s) 1111
Hin1II CATG 9 cut(s) 284, 367, 371, 479, 740, 762, 781, 793, 968
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HphI GGTGA 1 cut(s) 684
Hpy166II GTNNAC 2 cut(s) 839, 1053
Hpy188I TCNGA 8 cut(s) 27, 36, 405, 414, 579, 613, 662, 921
Hpy188III TCNNGA 1 cut(s) 525
Hpy8I GTNNAC 2 cut(s) 839, 1053
Hpy99I CGWCG 1 cut(s) 814
HpyAV CCTTC 3 cut(s) 59, 265, 699
HpyCH4III ACNGT 2 cut(s) 915, 939
HpyCH4IV ACGT 2 cut(s) 925, 1098
HpyCH4V TGCA 2 cut(s) 367, 1070
HpyF10VI GCNNNNNNNGC 5 cut(s) 181, 227, 260, 281, 377
HpyF3I CTNAG 5 cut(s) 78, 186, 222, 843, 920
HpySE526I ACGT 2 cut(s) 925, 1098
Hsp92II CATG 9 cut(s) 284, 367, 371, 479, 740, 762, 781, 793, 968
HspAI GCGC 1 cut(s) 1109
Ksp22I TGATCA 3 cut(s) 574, 586, 952
Kzo9I GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
LmnI GCTCC 2 cut(s) 111, 861
Lsp1109I GCAGC 4 cut(s) 217, 220, 263, 1054
MaeI CTAG 6 cut(s) 296, 675, 711, 746, 783, 1064
MaeII ACGT 2 cut(s) 925, 1098
MaeIII GTNAC 4 cut(s) 303, 548, 785, 828
MalI GATC 7 cut(s) 124, 245, 576, 588, 615, 954, 969
MboI GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 2 cut(s) 265, 397
MlsI TGGCCA 1 cut(s) 794
MluCI AATT 4 cut(s) 170, 408, 890, 1149
MluNI TGGCCA 1 cut(s) 794
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 9 cut(s) 195, 314, 327, 415, 458, 483, 573, 1003, 1066
Mox20I TGGCCA 1 cut(s) 794
Mph1103I ATGCAT 1 cut(s) 369
MroXI GAANNNNTTC 3 cut(s) 466, 688, 915
MscI TGGCCA 1 cut(s) 794
MseI TTAA 2 cut(s) 99, 1032
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 794
MspA1I CMGCKG 1 cut(s) 190
MspR9I CCNGG 2 cut(s) 386, 973
Mva1269I GAATGC 2 cut(s) 232, 690
MvaI CCWGG 2 cut(s) 386, 973
MwoI GCNNNNNNNGC 5 cut(s) 181, 227, 260, 281, 377
NdeII GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
NlaIII CATG 9 cut(s) 284, 367, 371, 479, 740, 762, 781, 793, 968
NlaIV GGNNCC 2 cut(s) 245, 469
NmeAIII GCCGAG 1 cut(s) 445
NmuCI GTSAC 2 cut(s) 548, 828
NsbI TGCGCA 1 cut(s) 1110
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 4 cut(s) 284, 367, 371, 762
NspV TTCGAA 1 cut(s) 515
PaeI GCATGC 2 cut(s) 367, 371
PciI ACATGT 1 cut(s) 758
PctI GAATGC 2 cut(s) 232, 690
PdmI GAANNNNTTC 3 cut(s) 466, 688, 915
PfeI GAWTC 9 cut(s) 22, 152, 193, 521, 559, 740, 803, 899, 1058
PkrI GCNGC 4 cut(s) 232, 235, 253, 1069
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
PscI ACATGT 1 cut(s) 758
PshBI ATTAAT 1 cut(s) 1032
Psp124BI GAGCTC 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 384, 971
PspGI CCWGG 2 cut(s) 384, 971
PspN4I GGNNCC 2 cut(s) 245, 469
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 919
PsuI RGATCY 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 190
RsaI GTAC 3 cut(s) 432, 544, 1101
RsaNI GTAC 3 cut(s) 431, 543, 1100
RseI CAYNNNNRTG 1 cut(s) 480
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 99, 1032
SatI GCNGC 4 cut(s) 231, 234, 252, 1068
Sau3AI GATC 7 cut(s) 122, 243, 574, 586, 613, 952, 967
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 2 cut(s) 386, 973
SduI GDGCHC 2 cut(s) 265, 397
SfcI CTRYAG 2 cut(s) 988, 1068
SfuI TTCGAA 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 480
SpeI ACTAGT 1 cut(s) 674
SphI GCATGC 2 cut(s) 367, 371
Sse9I AATT 4 cut(s) 170, 408, 890, 1149
SspMI CTAG 6 cut(s) 296, 675, 711, 746, 783, 1064
SstI GAGCTC 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 384, 971
TaaI ACNGT 2 cut(s) 915, 939
TaiI ACGT 2 cut(s) 928, 1101
TaqI TCGA 5 cut(s) 155, 391, 515, 750, 809
TasI AATT 4 cut(s) 170, 408, 890, 1149
TatI WGTACW 2 cut(s) 430, 542
TfiI GAWTC 9 cut(s) 22, 152, 193, 521, 559, 740, 803, 899, 1058
Tru1I TTAA 2 cut(s) 99, 1032
Tru9I TTAA 2 cut(s) 99, 1032
TseFI GTSAC 2 cut(s) 548, 828
TseI GCWGC 4 cut(s) 230, 233, 251, 1067
Tsp45I GTSAC 2 cut(s) 548, 828
TspDTI ATGAA 7 cut(s) 78, 479, 498, 534, 766, 918, 924
VspI ATTAAT 1 cut(s) 1032
XapI RAATTY 1 cut(s) 408
XceI RCATGY 4 cut(s) 284, 367, 371, 762
XmiI GTMKAC 1 cut(s) 1052
XmnI GAANNNNTTC 3 cut(s) 466, 688, 915
XspI CTAG 6 cut(s) 296, 675, 711, 746, 783, 1064
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.