Rmu_sc0009360.1_g000003

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009360.1
OG0015645
Physical Location & Seq
Reverse (-)
3554 .. 4242
689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009360.1_g000003.1.cds

Sequence Viewer

Length: 603 bp
atggggaaggcaagcaaatggattctgaactttctgataggaaagcaggagaagaagaagaatgaagctcttttgactgagaaatgtgtgtcttctaccaccaagccaatccacccggggagtcccaaagttaagcgaagatggagctttggaagatcatcccacagggtttcaaaatctgttgattcgattgacaccaccaaattgccattgaagcctcagctgaatcatgccgtctgggtatcaatacaggctgagaatgctgctgctacaaggatccaagcagcctttcgtgctcatttggcaaggaaggctttacatgccctgaagagtctagtgaagttacaagcactcataagaggtcactttgtgaggaaacaaactaatgctactatgagacgcatgcatgctttgttggcaatccaggttcgagctcgctgtcagagaattcagatggccgaggcagctgtacaggaaaataaaaagcagtcgtccattagaagaggttcccctcatgccaatgaagttcatagggtaattagtcctccttcaatcttaaattttctcctagattttatctctgctagttctcaagatatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

200

Amino Acids

22.44

Weight (kDa)

11.44

Isoelectric Point (pI)

47.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015645)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03280
malus_domestica MD04G1222100.v1.1 MD12G1238300.v1.1
prunus_persica Prupe.6G341200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451751
rosa_laevigata RLG00000025654
rosa_multiflora Rmu_sc0004924.1_g000003 Rmu_sc0009360.1_g000003
rosa_roxburghii Rroxscaffold_164G00436340 Rroxscaffold_6G00428950
rosa_rugosa Rorug02G0635600
rosa_samantha Rh3AG037400 Rh3BG038500 Rh3CG037000 Rh3DG037700
rosa_wichuraiana Rw3G002790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 271, 284
AcoI YGGCCR 1 cut(s) 456
AcsI RAATTY 2 cut(s) 447, 559
AcuI CTGAAG 1 cut(s) 347
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 1 cut(s) 471
AgsI TTSAA 3 cut(s) 174, 214, 552
AjnI CCWGG 1 cut(s) 423
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 5 cut(s) 68, 147, 223, 434, 467
AluI AGCT 5 cut(s) 68, 147, 223, 434, 467
Alw21I GWGCWC 2 cut(s) 298, 436
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 271, 284
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 4 cut(s) 263, 266, 284, 464
ApoI RAATTY 2 cut(s) 447, 559
Asp700I GAANNNNTTC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 116, 117
AvaI CYCGRG 1 cut(s) 115
BamHI GGATCC 1 cut(s) 276
BanII GRGCYC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 298, 436
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 4 cut(s) 250, 253, 296, 476
BccI CCATC 2 cut(s) 135, 448
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 2 cut(s) 116, 117
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 3 cut(s) 335, 569, 585
BisI GCNGC 4 cut(s) 264, 267, 285, 465
BlsI GCNGC 4 cut(s) 265, 268, 286, 466
Bme1390I CCNGG 3 cut(s) 116, 117, 425
BmeT110I CYCGRG 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 278, 508
BmrFI CCNGG 3 cut(s) 116, 117, 425
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 576
BpuMI CCSGG 2 cut(s) 116, 117
BsaJI CCNNGG 3 cut(s) 115, 116, 459
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 3 cut(s) 115, 116, 459
BseGI GGATG 1 cut(s) 158
BseMII CTCAG 3 cut(s) 69, 233, 246
BseXI GCAGC 4 cut(s) 250, 253, 296, 476
BshFI GGCC 1 cut(s) 458
BsiHKAI GWGCWC 2 cut(s) 298, 436
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 391
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 115
Bsp1286I GDGCHC 2 cut(s) 298, 436
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 2 cut(s) 155, 276
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 70, 232, 247
BspLI GGNNCC 2 cut(s) 278, 508
BspPI GGATC 2 cut(s) 271, 284
BsrGI TGTACA 1 cut(s) 469
BssECI CCNNGG 3 cut(s) 115, 116, 459
BssMI GATC 2 cut(s) 155, 276
Bst2UI CCWGG 1 cut(s) 425
Bst6I CTCTTC 2 cut(s) 323, 496
BstAUI TGTACA 1 cut(s) 469
BstC8I GCNNGC 4 cut(s) 13, 404, 408, 436
BstDEI CTNAG 3 cut(s) 78, 219, 255
BstF5I GGATG 1 cut(s) 158
BstKTI GATC 2 cut(s) 158, 279
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 2 cut(s) 155, 276
BstMWI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 3 cut(s) 323, 406, 410
BstSCI CCNGG 3 cut(s) 114, 115, 423
BstV1I GCAGC 4 cut(s) 250, 253, 296, 476
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 1 cut(s) 458
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 4 cut(s) 13, 404, 408, 436
Cfr9I CCCGGG 1 cut(s) 115
CseI GACGC 1 cut(s) 408
Csp6I GTAC 1 cut(s) 470
CviAII CATG 5 cut(s) 230, 320, 403, 407, 515
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 78, 219, 255
DpnI GATC 2 cut(s) 157, 278
DpnII GATC 2 cut(s) 155, 276
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 323, 496
EarI CTCTTC 2 cut(s) 323, 496
Ecl136II GAGCTC 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 436
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 391
FaeI CATG 5 cut(s) 233, 323, 406, 410, 518
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 108
FatI CATG 5 cut(s) 229, 319, 402, 406, 514
Fnu4HI GCNGC 4 cut(s) 264, 267, 285, 465
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 436
Fsp4HI GCNGC 4 cut(s) 264, 267, 285, 465
FspBI CTAG 3 cut(s) 335, 569, 585
GluI GCNGC 4 cut(s) 264, 267, 285, 465
HaeIII GGCC 1 cut(s) 458
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 408
Hin1II CATG 5 cut(s) 233, 323, 406, 410, 518
HinfI GANTC 5 cut(s) 22, 121, 185, 226, 331
HpaII CCGG 1 cut(s) 116
Hpy188I TCNGA 4 cut(s) 27, 36, 444, 453
Hpy188III TCNNGA 1 cut(s) 593
HpyAV CCTTC 2 cut(s) 304, 558
HpyCH4V TGCA 1 cut(s) 406
HpyF10VI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
HpyF3I CTNAG 3 cut(s) 78, 219, 255
Hsp92II CATG 5 cut(s) 233, 323, 406, 410, 518
Kzo9I GATC 2 cut(s) 155, 276
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 9 cut(s) 32, 129, 151, 223, 236, 338, 410, 437, 458
Lsp1109I GCAGC 4 cut(s) 250, 253, 296, 476
MaeI CTAG 3 cut(s) 335, 569, 585
MaeIII GTNAC 2 cut(s) 342, 362
MalI GATC 2 cut(s) 157, 278
MboI GATC 2 cut(s) 155, 276
MboII GAAGA 8 cut(s) 64, 67, 70, 84, 150, 165, 340, 513
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 2 cut(s) 298, 436
MluCI AATT 4 cut(s) 203, 447, 537, 559
MlyI GAGTC 2 cut(s) 130, 340
MnlI CCTC 7 cut(s) 228, 353, 366, 454, 497, 522, 555
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 1 cut(s) 505
MseI TTAA 2 cut(s) 132, 557
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 2 cut(s) 223, 467
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 3 cut(s) 116, 117, 425
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 1 cut(s) 425
MwoI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
NciI CCSGG 2 cut(s) 116, 117
NdeII GATC 2 cut(s) 155, 276
NlaIII CATG 5 cut(s) 233, 323, 406, 410, 518
NlaIV GGNNCC 2 cut(s) 278, 508
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 3 cut(s) 323, 406, 410
PaeI GCATGC 2 cut(s) 406, 410
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 1 cut(s) 505
PfeI GAWTC 3 cut(s) 22, 185, 226
PkrI GCNGC 4 cut(s) 265, 268, 286, 466
PleI GAGTC 2 cut(s) 129, 339
PpsI GAGTC 2 cut(s) 129, 339
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 278, 508
PsuI RGATCY 1 cut(s) 276
PvuII CAGCTG 2 cut(s) 223, 467
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 436
SaqAI TTAA 2 cut(s) 132, 557
SatI GCNGC 4 cut(s) 264, 267, 285, 465
Sau3AI GATC 2 cut(s) 155, 276
SchI GAGTC 2 cut(s) 130, 340
ScrFI CCNGG 3 cut(s) 116, 117, 425
SduI GDGCHC 2 cut(s) 298, 436
SetI ASST 8 cut(s) 70, 149, 225, 364, 429, 436, 469, 508
SmaI CCCGGG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 1 cut(s) 591
SmoI CTYRAG 1 cut(s) 591
SphI GCATGC 2 cut(s) 406, 410
Sse9I AATT 4 cut(s) 203, 447, 537, 559
SspMI CTAG 3 cut(s) 335, 569, 585
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 3 cut(s) 114, 115, 423
TaqI TCGA 2 cut(s) 188, 430
TasI AATT 4 cut(s) 203, 447, 537, 559
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 3 cut(s) 22, 185, 226
Tru1I TTAA 2 cut(s) 132, 557
Tru9I TTAA 2 cut(s) 132, 557
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 4 cut(s) 263, 266, 284, 464
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 3 cut(s) 78, 518, 537
TspMI CCCGGG 1 cut(s) 115
XapI RAATTY 2 cut(s) 447, 559
XceI RCATGY 3 cut(s) 323, 406, 410
XmaI CCCGGG 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 505
XspI CTAG 3 cut(s) 335, 569, 585
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.