Rh3DG037700

Protein of unknown function (DUF4005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015645
Physical Location & Seq
Forward (+)
2506059 .. 2508089
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG037700.1

Sequence Viewer

Length: 1134 bp
ATGGGGAAGGCAAGCAAATGGATTCTGAACTTTCTGATAGGAAAGCAGGAGAAGAAGAAGAATGAAGCTCTTTTGACTGAGAAATGTGTGTCTTCTACCACCAAGCCAATCCACCTGGGGAGTCCCAAAGTTAAGCGAAGATGGAGCTTTGGAAGATCATCCCACAGGGTTTCAAAATCTGTTGATTCGATTGACACCACCAAATTGCCATTGAAGCCTCAGCTGAATCATGCCGTCTGGGTATCAATACAAGCTGAGAATGCTGCTGCTACAAGGATCCAAGCAGCCTTTCGTGCTCATTTGGCAAGGAAGGCTTTACATGCCCTGAAGAGTCTAGTGAAGTTACAAGCACTCATAAGAGGTCACTTTGTGAGGAAACAAACTAATGCTACTATGAGACGCATGCATGCTCTGTTGGCAATCCAGGTTCGAGCTCGCTGTCAGAGAATTCAGATGGCCGAGGCAGCTGTACAGGAAAATAAAAAGCAGTCATCCATTAGAAGAGGTTCCCCTCATGCCAATGAAGTTCATAGGAAGAAAATCTATATGATTTCGAATGAATCACGAAGAGTTTTGAAAAGTACAAGTGACTACCTGAATCATTCACAAACTGATCAGAGGATTGATCATAGCTACACATCATTTTCTTCTGATCGTCTGTCCATCTCTAACCGACACAAATACAATGAAACCTTGTTTAGAACACCAGAAACTAGCCCCCAAATGCCTTCACCCACACCGAAACCAACTAGACCTTACATCCCTTTTCAACAGCATGATTCTCTAGTCGAGCCTACATGTTATGACTACTCATTCATGCCTAGTTACATGGCCAACACAGAATCTTCGAGGGCCAAAAAAGTCAGGTCACAGAGTGAACCTAAGCAACGACCTGATGGGAGCAACAAGCATAAAAGCAAGCATACAGAACTAGTAGATTCAACAGATGAACAGTTTCTGAGACATTCATCTTCACAGTTCAAAACCAATGATCACAAAAACCAAGATCCCTGGTTTGGTAAGCTCTACAGACCAAGAAGATTGTTTGAGGACAACAAGTATGATTACATTAATCCAAGTCATTCCAAGTATACTGAATCTCTAGCTGCAGAGCCCCATGTGATTTTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4005 IQ

Protein Analysis

377

Amino Acids

43.59

Weight (kDa)

10.17

Isoelectric Point (pI)

58.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4005 PF13178 247 - 316 4.1e-08 Protein of unknown function (DUF4005)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015645)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g03280
malus_domestica MD04G1222100.v1.1 MD12G1238300.v1.1
prunus_persica Prupe.6G341200_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0451751
rosa_laevigata RLG00000025654
rosa_multiflora Rmu_sc0004924.1_g000003 Rmu_sc0009360.1_g000003
rosa_roxburghii Rroxscaffold_164G00436340 Rroxscaffold_6G00428950
rosa_rugosa Rorug02G0635600
rosa_samantha Rh3AG037400 Rh3BG038500 Rh3CG037000 Rh3DG037700
rosa_wichuraiana Rw3G002790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1091
AclWI GGATC 3 cut(s) 271, 284, 1001
AcoI YGGCCR 2 cut(s) 456, 831
AcsI RAATTY 1 cut(s) 447
AcuI CTGAAG 1 cut(s) 347
AdeI CACNNNGTG 2 cut(s) 370, 875
AfaI GTAC 2 cut(s) 471, 583
AfiI CCNNNNNNNGG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 797
AgsI TTSAA 6 cut(s) 174, 214, 577, 770, 942, 982
AhlI ACTAGT 1 cut(s) 931
AjnI CCWGG 3 cut(s) 114, 423, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 9 cut(s) 68, 147, 223, 254, 434, 467, 633, 1024, 1106
AluI AGCT 9 cut(s) 68, 147, 223, 254, 434, 467, 633, 1024, 1106
Alw21I GWGCWC 2 cut(s) 298, 436
Alw26I GTCTC 2 cut(s) 391, 955
AlwI GGATC 3 cut(s) 271, 284, 1001
AlwNI CAGNNNCTG 1 cut(s) 958
AoxI GGCC 3 cut(s) 456, 831, 852
ApeKI GCWGC 5 cut(s) 263, 266, 284, 464, 1106
ApoI RAATTY 1 cut(s) 447
AseI ATTAAT 1 cut(s) 1071
Asp700I GAANNNNTTC 2 cut(s) 505, 954
AspS9I GGNCC 1 cut(s) 852
AsuHPI GGTGA 1 cut(s) 723
AsuII TTCGAA 1 cut(s) 554
BalI TGGCCA 1 cut(s) 833
BamHI GGATCC 1 cut(s) 276
BanII GRGCYC 2 cut(s) 436, 1116
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 2 cut(s) 298, 436
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 250, 253, 296, 476, 1093
BccI CCATC 4 cut(s) 135, 448, 671, 890
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 3 cut(s) 116, 425, 1012
BclI TGATCA 3 cut(s) 613, 625, 991
BcoDI GTCTC 2 cut(s) 391, 955
BcuI ACTAGT 1 cut(s) 931
BfaI CTAG 7 cut(s) 335, 714, 750, 785, 822, 932, 1103
BfmI CTRYAG 2 cut(s) 1027, 1107
BisI GCNGC 5 cut(s) 264, 267, 285, 465, 1107
BlsI GCNGC 5 cut(s) 265, 268, 286, 466, 1108
Bme1390I CCNGG 3 cut(s) 116, 425, 1012
BmgT120I GGNCC 1 cut(s) 852
BmiI GGNNCC 2 cut(s) 278, 508
BmrFI CCNGG 3 cut(s) 116, 425, 1012
BpiI GAAGAC 1 cut(s) 84
Bpu10I CCTNAGC 2 cut(s) 219, 882
Bpu14I TTCGAA 1 cut(s) 554
BsaJI CCNNGG 3 cut(s) 115, 459, 1010
Bsc4I CCNNNNNNNGG 1 cut(s) 1016
BseBI CCWGG 3 cut(s) 116, 425, 1012
BseDI CCNNGG 3 cut(s) 115, 459, 1010
BseGI GGATG 3 cut(s) 158, 491, 759
BseLI CCNNNNNNNGG 1 cut(s) 1016
BseMII CTCAG 4 cut(s) 69, 233, 246, 950
BseXI GCAGC 5 cut(s) 250, 253, 296, 476, 1093
BshFI GGCC 3 cut(s) 458, 833, 854
BsiHKAI GWGCWC 2 cut(s) 298, 436
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 1016
BsmAI GTCTC 2 cut(s) 391, 955
BsmBI CGTCTC 1 cut(s) 391
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 265
BsnI GGCC 3 cut(s) 458, 833, 854
Bsp119I TTCGAA 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 298, 436, 1116
Bsp1407I TGTACA 1 cut(s) 469
Bsp143I GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
BspANI GGCC 3 cut(s) 458, 833, 854
BspCNI CTCAG 4 cut(s) 70, 232, 247, 951
BspLI GGNNCC 2 cut(s) 278, 508
BspMAI CTGCAG 1 cut(s) 1111
BspPI GGATC 3 cut(s) 271, 284, 1001
BspT104I TTCGAA 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 469
BssECI CCNNGG 3 cut(s) 115, 459, 1010
BssMI GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
BssNAI GTATAC 1 cut(s) 1092
Bst1107I GTATAC 1 cut(s) 1092
Bst2UI CCWGG 3 cut(s) 116, 425, 1012
Bst4CI ACNGT 2 cut(s) 954, 978
Bst6I CTCTTC 3 cut(s) 323, 496, 562
BstAUI TGTACA 1 cut(s) 469
BstBI TTCGAA 1 cut(s) 554
BstC8I GCNNGC 5 cut(s) 13, 404, 408, 436, 920
BstDEI CTNAG 5 cut(s) 78, 219, 255, 882, 959
BstF5I GGATG 3 cut(s) 158, 491, 759
BstKTI GATC 7 cut(s) 158, 279, 616, 628, 655, 994, 1009
BstMAI GTCTC 2 cut(s) 391, 955
BstMBI GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
BstMWI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
BstNI CCWGG 3 cut(s) 116, 425, 1012
BstNSI RCATGY 4 cut(s) 323, 406, 410, 801
BstSCI CCNGG 3 cut(s) 114, 423, 1010
BstSFI CTRYAG 2 cut(s) 1027, 1107
BstV1I GCAGC 5 cut(s) 250, 253, 296, 476, 1093
BstV2I GAAGAC 1 cut(s) 84
BstX2I RGATCY 2 cut(s) 276, 1006
BstYI RGATCY 2 cut(s) 276, 1006
BstZ17I GTATAC 1 cut(s) 1092
BsuRI GGCC 3 cut(s) 458, 833, 854
BtsCI GGATG 3 cut(s) 158, 491, 759
Cac8I GCNNGC 5 cut(s) 13, 404, 408, 436, 920
CaiI CAGNNNCTG 1 cut(s) 958
Cfr13I GGNCC 1 cut(s) 852
CseI GACGC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 470, 582
CviQI GTAC 2 cut(s) 470, 582
DdeI CTNAG 5 cut(s) 78, 219, 255, 882, 959
DpnI GATC 7 cut(s) 157, 278, 615, 627, 654, 993, 1008
DpnII GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
DraIII CACNNNGTG 2 cut(s) 370, 875
EaeI YGGCCR 2 cut(s) 456, 831
Eam1104I CTCTTC 3 cut(s) 323, 496, 562
EarI CTCTTC 3 cut(s) 323, 496, 562
Ecl136II GAGCTC 1 cut(s) 434
Eco24I GRGCYC 2 cut(s) 436, 1116
Eco53kI GAGCTC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 434
EcoRI GAATTC 1 cut(s) 447
EcoRII CCWGG 3 cut(s) 114, 423, 1010
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 2 cut(s) 436, 1116
Esp3I CGTCTC 1 cut(s) 391
FalI AAGNNNNNCTT 2 cut(s) 298, 330
FaqI GGGAC 1 cut(s) 108
FbaI TGATCA 3 cut(s) 613, 625, 991
FblI GTMKAC 1 cut(s) 1091
Fnu4HI GCNGC 5 cut(s) 264, 267, 285, 465, 1107
FokI GGATG 3 cut(s) 145, 478, 746
FriOI GRGCYC 2 cut(s) 436, 1116
Fsp4HI GCNGC 5 cut(s) 264, 267, 285, 465, 1107
FspBI CTAG 7 cut(s) 335, 714, 750, 785, 822, 932, 1103
GluI GCNGC 5 cut(s) 264, 267, 285, 465, 1107
HaeIII GGCC 3 cut(s) 458, 833, 854
HgaI GACGC 1 cut(s) 408
HphI GGTGA 1 cut(s) 723
Hpy166II GTNNAC 2 cut(s) 878, 1092
Hpy188I TCNGA 7 cut(s) 27, 36, 444, 453, 618, 652, 960
Hpy188III TCNNGA 1 cut(s) 564
Hpy8I GTNNAC 2 cut(s) 878, 1092
HpyAV CCTTC 2 cut(s) 304, 738
HpyCH4III ACNGT 2 cut(s) 954, 978
HpyCH4V TGCA 2 cut(s) 406, 1109
HpyF10VI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
HpyF3I CTNAG 5 cut(s) 78, 219, 255, 882, 959
Ksp22I TGATCA 3 cut(s) 613, 625, 991
Kzo9I GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
LmnI GCTCC 2 cut(s) 144, 900
Lsp1109I GCAGC 5 cut(s) 250, 253, 296, 476, 1093
MaeI CTAG 7 cut(s) 335, 714, 750, 785, 822, 932, 1103
MaeIII GTNAC 5 cut(s) 342, 362, 587, 824, 867
MalI GATC 7 cut(s) 157, 278, 615, 627, 654, 993, 1008
MboI GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
MflI RGATCY 2 cut(s) 276, 1006
MhlI GDGCHC 3 cut(s) 298, 436, 1116
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 2 cut(s) 203, 447
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 2 cut(s) 130, 340
MnlI CCTC 9 cut(s) 228, 353, 366, 454, 497, 522, 612, 843, 1042
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 408
MroXI GAANNNNTTC 2 cut(s) 505, 954
MscI TGGCCA 1 cut(s) 833
MseI TTAA 3 cut(s) 132, 1071, 1132
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 833
MspA1I CMGCKG 2 cut(s) 223, 467
MspR9I CCNGG 3 cut(s) 116, 425, 1012
Mva1269I GAATGC 1 cut(s) 265
MvaI CCWGG 3 cut(s) 116, 425, 1012
MwoI GCNNNNNNNGC 8 cut(s) 214, 260, 293, 302, 311, 320, 416, 464
NdeII GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
NlaIV GGNNCC 2 cut(s) 278, 508
NmeAIII GCCGAG 1 cut(s) 484
NmuCI GTSAC 3 cut(s) 362, 587, 867
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 4 cut(s) 323, 406, 410, 801
NspV TTCGAA 1 cut(s) 554
PaeI GCATGC 2 cut(s) 406, 410
PciI ACATGT 1 cut(s) 797
PctI GAATGC 1 cut(s) 265
PdmI GAANNNNTTC 2 cut(s) 505, 954
PfeI GAWTC 9 cut(s) 22, 185, 226, 560, 598, 779, 842, 938, 1097
PkrI GCNGC 5 cut(s) 265, 268, 286, 466, 1108
PleI GAGTC 2 cut(s) 129, 339
PpsI GAGTC 2 cut(s) 129, 339
PscI ACATGT 1 cut(s) 797
PshBI ATTAAT 1 cut(s) 1071
Psp124BI GAGCTC 1 cut(s) 436
Psp6I CCWGG 3 cut(s) 114, 423, 1010
PspGI CCWGG 3 cut(s) 114, 423, 1010
PspN4I GGNNCC 2 cut(s) 278, 508
PspPI GGNCC 1 cut(s) 852
PstI CTGCAG 1 cut(s) 1111
PstNI CAGNNNCTG 1 cut(s) 958
PsuI RGATCY 2 cut(s) 276, 1006
PvuII CAGCTG 2 cut(s) 223, 467
RsaI GTAC 2 cut(s) 471, 583
RsaNI GTAC 2 cut(s) 470, 582
RseI CAYNNNNRTG 1 cut(s) 519
SacI GAGCTC 1 cut(s) 436
SaqAI TTAA 3 cut(s) 132, 1071, 1132
SatI GCNGC 5 cut(s) 264, 267, 285, 465, 1107
Sau3AI GATC 7 cut(s) 155, 276, 613, 625, 652, 991, 1006
Sau96I GGNCC 1 cut(s) 852
SchI GAGTC 2 cut(s) 130, 340
ScrFI CCNGG 3 cut(s) 116, 425, 1012
SduI GDGCHC 3 cut(s) 298, 436, 1116
SfcI CTRYAG 2 cut(s) 1027, 1107
SfuI TTCGAA 1 cut(s) 554
SmiMI CAYNNNNRTG 1 cut(s) 519
SpeI ACTAGT 1 cut(s) 931
SphI GCATGC 2 cut(s) 406, 410
Sse9I AATT 2 cut(s) 203, 447
SspMI CTAG 7 cut(s) 335, 714, 750, 785, 822, 932, 1103
SstI GAGCTC 1 cut(s) 436
StyD4I CCNGG 3 cut(s) 114, 423, 1010
TaaI ACNGT 2 cut(s) 954, 978
TaqI TCGA 5 cut(s) 188, 430, 554, 789, 848
TasI AATT 2 cut(s) 203, 447
TatI WGTACW 2 cut(s) 469, 581
TfiI GAWTC 9 cut(s) 22, 185, 226, 560, 598, 779, 842, 938, 1097
Tru1I TTAA 3 cut(s) 132, 1071, 1132
Tru9I TTAA 3 cut(s) 132, 1071, 1132
TseFI GTSAC 3 cut(s) 362, 587, 867
TseI GCWGC 5 cut(s) 263, 266, 284, 464, 1106
Tsp45I GTSAC 3 cut(s) 362, 587, 867
TspDTI ATGAA 8 cut(s) 78, 518, 537, 573, 702, 805, 957, 963
VspI ATTAAT 1 cut(s) 1071
XapI RAATTY 1 cut(s) 447
XceI RCATGY 4 cut(s) 323, 406, 410, 801
XmiI GTMKAC 1 cut(s) 1091
XmnI GAANNNNTTC 2 cut(s) 505, 954
XspI CTAG 7 cut(s) 335, 714, 750, 785, 822, 932, 1103
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.