E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G53090 AT3G53090 |
| fragaria_vesca | FvH4_6g17370 |
| malus_domestica | MD12G1101300.v1.1 MD14G1095600.v1.1 |
| prunus_persica | Prupe.7G121800_v2.0.a1 |
| pyrus_communis | pycom14g09370 |
| rosa_chinensis | RchiOBHm_Chr3g0471541 |
| rosa_laevigata | RLG00000024156 RLG00000024169 |
| rosa_multiflora | Rmu_sc0011843.1_g000001 Rmu_sc0039862.1_g000001 Rmu_ssc0000445.1_g000002 |
| rosa_roxburghii | Rroxscaffold_6G00409820 |
| rosa_rugosa | Rorug03G0118300 Rorug03G0118400 |
| rosa_samantha | Rh3AG168500 Rh3BG194000 Rh3CG184500 Rh3DG181200 |
| rosa_wichuraiana | Rw3G015880 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 2034, 2273, 2997 |
| AarI | CACCTGC | 2 cut(s) | 2170, 3080 |
| Acc36I | ACCTGC | 3 cut(s) | 1061, 2170, 3080 |
| AccB1I | GGYRCC | 2 cut(s) | 1975, 2127 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3290 |
| AccBSI | CCGCTC | 1 cut(s) | 3382 |
| AccII | CGCG | 2 cut(s) | 47, 2189 |
| AciI | CCGC | 6 cut(s) | 134, 2176, 2189, 2285, 3171, 3382 |
| AclI | AACGTT | 1 cut(s) | 3241 |
| AclWI | GGATC | 6 cut(s) | 1035, 1124, 1534, 1622, 2626, 2801 |
| AcsI | RAATTY | 9 cut(s) | 336, 352, 1656, 1786, 1958, 2449, 2721, 3095, 3257 |
| AcuI | CTGAAG | 2 cut(s) | 2910, 3437 |
| AfaI | GTAC | 7 cut(s) | 753, 787, 1331, 1487, 2975, 3164, 3216 |
| AflII | CTTAAG | 1 cut(s) | 2924 |
| AflIII | ACRYGT | 1 cut(s) | 2746 |
| AjnI | CCWGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2248, 2280, 2883, 2915 |
| Alw21I | GWGCWC | 2 cut(s) | 3283, 3446 |
| Alw26I | GTCTC | 3 cut(s) | 57, 88, 1415 |
| AlwI | GGATC | 6 cut(s) | 1035, 1124, 1534, 1622, 2626, 2801 |
| Ama87I | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| AoxI | GGCC | 5 cut(s) | 275, 806, 1867, 2506, 2521 |
| ApeKI | GCWGC | 7 cut(s) | 131, 1289, 1459, 2195, 2243, 2573, 3356 |
| ApoI | RAATTY | 9 cut(s) | 336, 352, 1656, 1786, 1958, 2449, 2721, 3095, 3257 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1501 |
| AspLEI | GCGC | 3 cut(s) | 47, 162, 2248 |
| AspS9I | GGNCC | 4 cut(s) | 839, 1314, 1868, 2378 |
| AvaI | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| AvaII | GGWCC | 3 cut(s) | 839, 1314, 2378 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 621, 654 |
| BanI | GGYRCC | 2 cut(s) | 1975, 2127 |
| BanII | GRGCYC | 2 cut(s) | 1081, 3283 |
| BbsI | GAAGAC | 2 cut(s) | 130, 911 |
| Bbv12I | GWGCWC | 2 cut(s) | 3283, 3446 |
| BbvI | GCAGC | 7 cut(s) | 118, 1301, 1446, 2182, 2230, 2585, 3368 |
| BciT130I | CCWGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| BciVI | GTATCC | 1 cut(s) | 2678 |
| BcoDI | GTCTC | 3 cut(s) | 57, 88, 1415 |
| BfmI | CTRYAG | 2 cut(s) | 163, 3037 |
| BfoI | RGCGCY | 1 cut(s) | 163 |
| BfrI | CTTAAG | 1 cut(s) | 2924 |
| BfuAI | ACCTGC | 3 cut(s) | 1061, 2170, 3080 |
| BfuI | GTATCC | 1 cut(s) | 2678 |
| BglII | AGATCT | 1 cut(s) | 1375 |
| BisI | GCNGC | 8 cut(s) | 132, 1290, 1460, 2196, 2244, 2574, 3357, 3383 |
| BlsI | GCNGC | 8 cut(s) | 133, 1291, 1461, 2197, 2245, 2575, 3358, 3384 |
| Bme1390I | CCNGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| Bme18I | GGWCC | 3 cut(s) | 839, 1314, 2378 |
| BmeT110I | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| BmgT120I | GGNCC | 4 cut(s) | 839, 1314, 1868, 2378 |
| BmiI | GGNNCC | 5 cut(s) | 1142, 1315, 1977, 2129, 3188 |
| BmrFI | CCNGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| BmsI | GCATC | 5 cut(s) | 706, 1375, 2084, 2230, 2958 |
| BoxI | GACNNNNGTC | 1 cut(s) | 9 |
| BpiI | GAAGAC | 2 cut(s) | 130, 911 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 68, 100, 70, 102 |
| BpmI | CTGGAG | 4 cut(s) | 469, 1155, 2009, 2678 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1806 |
| BpuEI | CTTGAG | 3 cut(s) | 95, 1235, 1857 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1026, 3200 |
| BsaI | GGTCTC | 1 cut(s) | 88 |
| BsaJI | CCNNGG | 8 cut(s) | 414, 1053, 1252, 1562, 1610, 1611, 2514, 2686 |
| BsaWI | WCCGGW | 1 cut(s) | 3189 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 395, 425, 3360, 3390 |
| Bse1I | ACTGG | 6 cut(s) | 1535, 1762, 1992, 2131, 3172, 3267 |
| Bse3DI | GCAATG | 3 cut(s) | 561, 1780, 3366 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1026, 3200 |
| BseBI | CCWGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| BseDI | CCNNGG | 8 cut(s) | 414, 1053, 1252, 1562, 1610, 1611, 2514, 2686 |
| BseGI | GGATG | 5 cut(s) | 321, 474, 2474, 2478, 3379 |
| BseJI | GATNNNNATC | 2 cut(s) | 1026, 3200 |
| BseMI | GCAATG | 3 cut(s) | 561, 1780, 3366 |
| BseMII | CTCAG | 7 cut(s) | 101, 222, 597, 1410, 1507, 2232, 2631 |
| BseNI | ACTGG | 6 cut(s) | 1535, 1762, 1992, 2131, 3172, 3267 |
| BseRI | GAGGAG | 2 cut(s) | 51, 449 |
| BseXI | GCAGC | 7 cut(s) | 118, 1301, 1446, 2182, 2230, 2585, 3368 |
| BseYI | CCCAGC | 2 cut(s) | 1066, 1356 |
| BsgI | GTGCAG | 2 cut(s) | 537, 645 |
| Bsh1236I | CGCG | 2 cut(s) | 47, 2189 |
| BshFI | GGCC | 5 cut(s) | 277, 808, 1869, 2508, 2523 |
| BshNI | GGYRCC | 2 cut(s) | 1975, 2127 |
| BsiHKAI | GWGCWC | 2 cut(s) | 3283, 3446 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| BsiSI | CCGG | 1 cut(s) | 3190 |
| BsmAI | GTCTC | 3 cut(s) | 57, 88, 1415 |
| BsmBI | CGTCTC | 1 cut(s) | 57 |
| BsnI | GGCC | 5 cut(s) | 277, 808, 1869, 2508, 2523 |
| Bso31I | GGTCTC | 1 cut(s) | 88 |
| BsoBI | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1081, 3283, 3446 |
| BspACI | CCGC | 6 cut(s) | 134, 2176, 2189, 2285, 3171, 3382 |
| BspANI | GGCC | 5 cut(s) | 277, 808, 1869, 2508, 2523 |
| BspCNI | CTCAG | 7 cut(s) | 100, 223, 598, 1411, 1506, 2231, 2630 |
| BspFNI | CGCG | 2 cut(s) | 47, 2189 |
| BspHI | TCATGA | 1 cut(s) | 2206 |
| BspLI | GGNNCC | 5 cut(s) | 1142, 1315, 1977, 2129, 3188 |
| BspMI | ACCTGC | 3 cut(s) | 1061, 2170, 3080 |
| BspPI | GGATC | 6 cut(s) | 1035, 1124, 1534, 1622, 2626, 2801 |
| BspQI | GCTCTTC | 3 cut(s) | 590, 733, 933 |
| BspT107I | GGYRCC | 2 cut(s) | 1975, 2127 |
| BspTI | CTTAAG | 1 cut(s) | 2924 |
| BspTNI | GGTCTC | 1 cut(s) | 88 |
| BsrBI | CCGCTC | 1 cut(s) | 3382 |
| BsrDI | GCAATG | 3 cut(s) | 561, 1780, 3366 |
| BsrI | ACTGG | 6 cut(s) | 1535, 1762, 1992, 2131, 3172, 3267 |
| BssECI | CCNNGG | 8 cut(s) | 414, 1053, 1252, 1562, 1610, 1611, 2514, 2686 |
| BssT1I | CCWWGG | 3 cut(s) | 1053, 1252, 2686 |
| Bst2UI | CCWGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| Bst6I | CTCTTC | 5 cut(s) | 436, 590, 733, 933, 2686 |
| BstAFI | CTTAAG | 1 cut(s) | 2924 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2579 |
| BstC8I | GCNNGC | 7 cut(s) | 43, 848, 1921, 2099, 2126, 2521, 3337 |
| BstDEI | CTNAG | 9 cut(s) | 87, 231, 606, 803, 1419, 1493, 1806, 2218, 2617 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2513 |
| BstF5I | GGATG | 5 cut(s) | 321, 474, 2474, 2478, 3379 |
| BstFNI | CGCG | 2 cut(s) | 47, 2189 |
| BstH2I | RGCGCY | 1 cut(s) | 163 |
| BstHHI | GCGC | 3 cut(s) | 47, 162, 2248 |
| BstMAI | GTCTC | 3 cut(s) | 57, 88, 1415 |
| BstNI | CCWGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| BstNSI | RCATGY | 6 cut(s) | 487, 1492, 1549, 2291, 2750, 3339 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 9 |
| BstSCI | CCNGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| BstSFI | CTRYAG | 2 cut(s) | 163, 3037 |
| BstUI | CGCG | 2 cut(s) | 47, 2189 |
| BstV1I | GCAGC | 7 cut(s) | 118, 1301, 1446, 2182, 2230, 2585, 3368 |
| BstV2I | GAAGAC | 2 cut(s) | 130, 911 |
| BstX2I | RGATCY | 1 cut(s) | 1375 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1074 |
| BstYI | RGATCY | 1 cut(s) | 1375 |
| BsuI | GTATCC | 1 cut(s) | 2678 |
| BsuRI | GGCC | 5 cut(s) | 277, 808, 1869, 2508, 2523 |
| BtsCI | GGATG | 5 cut(s) | 321, 474, 2474, 2478, 3379 |
| BtsI | GCAGTG | 3 cut(s) | 243, 642, 1367 |
| BveI | ACCTGC | 3 cut(s) | 1061, 2170, 3080 |
| Cac8I | GCNNGC | 7 cut(s) | 43, 848, 1921, 2099, 2126, 2521, 3337 |
| CciI | TCATGA | 1 cut(s) | 2206 |
| CfoI | GCGC | 3 cut(s) | 47, 162, 2248 |
| Cfr13I | GGNCC | 4 cut(s) | 839, 1314, 1868, 2378 |
| CseI | GACGC | 2 cut(s) | 74, 3384 |
| CsiI | ACCWGGT | 1 cut(s) | 2380 |
| Csp6I | GTAC | 7 cut(s) | 752, 786, 1330, 1486, 2974, 3163, 3215 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 162, 197 |
| CviQI | GTAC | 7 cut(s) | 752, 786, 1330, 1486, 2974, 3163, 3215 |
| DdeI | CTNAG | 9 cut(s) | 87, 231, 606, 803, 1419, 1493, 1806, 2218, 2617 |
| DraI | TTTAAA | 2 cut(s) | 1321, 3298 |
| Eam1104I | CTCTTC | 5 cut(s) | 436, 590, 733, 933, 2686 |
| EarI | CTCTTC | 5 cut(s) | 436, 590, 733, 933, 2686 |
| Ecl136II | GAGCTC | 1 cut(s) | 3281 |
| Eco130I | CCWWGG | 3 cut(s) | 1053, 1252, 2686 |
| Eco147I | AGGCCT | 1 cut(s) | 277 |
| Eco24I | GRGCYC | 2 cut(s) | 1081, 3283 |
| Eco31I | GGTCTC | 1 cut(s) | 88 |
| Eco32I | GATATC | 4 cut(s) | 856, 1891, 2654, 3343 |
| Eco47I | GGWCC | 3 cut(s) | 839, 1314, 2378 |
| Eco53kI | GAGCTC | 1 cut(s) | 3281 |
| Eco57I | CTGAAG | 2 cut(s) | 2910, 3437 |
| Eco88I | CYCGRG | 3 cut(s) | 2513, 2585, 3276 |
| EcoICRI | GAGCTC | 1 cut(s) | 3281 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2513 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1314 |
| EcoRI | GAATTC | 1 cut(s) | 1958 |
| EcoRII | CCWGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| EcoRV | GATATC | 4 cut(s) | 856, 1891, 2654, 3343 |
| EcoT14I | CCWWGG | 3 cut(s) | 1053, 1252, 2686 |
| EcoT38I | GRGCYC | 2 cut(s) | 1081, 3283 |
| ErhI | CCWWGG | 3 cut(s) | 1053, 1252, 2686 |
| Esp3I | CGTCTC | 1 cut(s) | 57 |
| FauI | CCCGC | 1 cut(s) | 2292 |
| FauNDI | CATATG | 1 cut(s) | 1168 |
| Fnu4HI | GCNGC | 8 cut(s) | 132, 1290, 1460, 2196, 2244, 2574, 3357, 3383 |
| FokI | GGATG | 5 cut(s) | 308, 481, 2461, 2465, 3386 |
| FriOI | GRGCYC | 2 cut(s) | 1081, 3283 |
| Fsp4HI | GCNGC | 8 cut(s) | 132, 1290, 1460, 2196, 2244, 2574, 3357, 3383 |
| GlaI | GCGC | 3 cut(s) | 46, 161, 2247 |
| GluI | GCNGC | 8 cut(s) | 132, 1290, 1460, 2196, 2244, 2574, 3357, 3383 |
| GsaI | CCCAGC | 2 cut(s) | 1070, 1360 |
| GsuI | CTGGAG | 4 cut(s) | 469, 1155, 2009, 2678 |
| HaeII | RGCGCY | 1 cut(s) | 163 |
| HaeIII | GGCC | 5 cut(s) | 277, 808, 1869, 2508, 2523 |
| HapII | CCGG | 1 cut(s) | 3190 |
| HgaI | GACGC | 2 cut(s) | 74, 3384 |
| HhaI | GCGC | 3 cut(s) | 47, 162, 2248 |
| Hin6I | GCGC | 3 cut(s) | 45, 160, 2246 |
| HinP1I | GCGC | 3 cut(s) | 45, 160, 2246 |
| HincII | GTYRAC | 5 cut(s) | 1183, 1225, 1822, 3048, 3399 |
| HindII | GTYRAC | 5 cut(s) | 1183, 1225, 1822, 3048, 3399 |
| HindIII | AAGCTT | 2 cut(s) | 2999, 3419 |
| HpaI | GTTAAC | 2 cut(s) | 1183, 3048 |
| HpaII | CCGG | 1 cut(s) | 3190 |
| Hpy166II | GTNNAC | 8 cut(s) | 1183, 1225, 1822, 3048, 3165, 3239, 3318, 3399 |
| Hpy8I | GTNNAC | 8 cut(s) | 1183, 1225, 1822, 3048, 3165, 3239, 3318, 3399 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyAV | CCTTC | 4 cut(s) | 43, 634, 2519, 2711 |
| HpyCH4IV | ACGT | 4 cut(s) | 10, 916, 3241, 3436 |
| HpyF3I | CTNAG | 9 cut(s) | 87, 231, 606, 803, 1419, 1493, 1806, 2218, 2617 |
| HpySE526I | ACGT | 4 cut(s) | 10, 916, 3241, 3436 |
| HspAI | GCGC | 3 cut(s) | 45, 160, 2246 |
| KspAI | GTTAAC | 2 cut(s) | 1183, 3048 |
| LguI | GCTCTTC | 3 cut(s) | 590, 733, 933 |
| LmnI | GCTCC | 8 cut(s) | 38, 190, 416, 724, 1456, 1990, 2587, 3286 |
| Lsp1109I | GCAGC | 7 cut(s) | 118, 1301, 1446, 2182, 2230, 2585, 3368 |
| LweI | GCATC | 5 cut(s) | 706, 1375, 2084, 2230, 2958 |
| MabI | ACCWGGT | 1 cut(s) | 2380 |
| MaeII | ACGT | 4 cut(s) | 10, 916, 3241, 3436 |
| MbiI | CCGCTC | 1 cut(s) | 3382 |
| MflI | RGATCY | 1 cut(s) | 1375 |
| MhlI | GDGCHC | 3 cut(s) | 1081, 3283, 3446 |
| MlyI | GAGTC | 4 cut(s) | 301, 386, 453, 1151 |
| MmeI | TCCRAC | 3 cut(s) | 1434, 1504, 3449 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1501 |
| MspA1I | CMGCKG | 1 cut(s) | 131 |
| MspCI | CTTAAG | 1 cut(s) | 2924 |
| MspI | CCGG | 1 cut(s) | 3190 |
| MspR9I | CCNGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| MvaI | CCWGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| MvnI | CGCG | 2 cut(s) | 47, 2189 |
| NdeI | CATATG | 1 cut(s) | 1168 |
| NlaIV | GGNNCC | 5 cut(s) | 1142, 1315, 1977, 2129, 3188 |
| NmeAIII | GCCGAG | 1 cut(s) | 289 |
| NmuCI | GTSAC | 6 cut(s) | 169, 379, 459, 503, 1619, 1735 |
| NspI | RCATGY | 6 cut(s) | 487, 1492, 1549, 2291, 2750, 3339 |
| PaeI | GCATGC | 1 cut(s) | 3339 |
| PaeR7I | CTCGAG | 1 cut(s) | 3276 |
| PagI | TCATGA | 1 cut(s) | 2206 |
| PaqCI | CACCTGC | 2 cut(s) | 2170, 3080 |
| PasI | CCCWGGG | 1 cut(s) | 1611 |
| PceI | AGGCCT | 1 cut(s) | 277 |
| PciI | ACATGT | 1 cut(s) | 2746 |
| PciSI | GCTCTTC | 3 cut(s) | 590, 733, 933 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1501 |
| PfeI | GAWTC | 9 cut(s) | 1060, 1121, 1246, 1576, 1829, 1942, 2081, 2824, 2894 |
| PflFI | GACNNNGTC | 1 cut(s) | 1229 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3290 |
| PfoI | TCCNGGA | 1 cut(s) | 1132 |
| PkrI | GCNGC | 8 cut(s) | 133, 1291, 1461, 2197, 2245, 2575, 3358, 3384 |
| PleI | GAGTC | 4 cut(s) | 301, 386, 452, 1151 |
| PpsI | GAGTC | 4 cut(s) | 301, 386, 452, 1151 |
| PpuMI | RGGWCCY | 1 cut(s) | 1314 |
| PscI | ACATGT | 1 cut(s) | 2746 |
| PshAI | GACNNNNGTC | 1 cut(s) | 9 |
| PsiI | TTATAA | 3 cut(s) | 2034, 2273, 2997 |
| Psp124BI | GAGCTC | 1 cut(s) | 3283 |
| Psp1406I | AACGTT | 1 cut(s) | 3241 |
| Psp5II | RGGWCCY | 1 cut(s) | 1314 |
| Psp6I | CCWGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| PspFI | CCCAGC | 2 cut(s) | 1066, 1356 |
| PspGI | CCWGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| PspN4I | GGNNCC | 5 cut(s) | 1142, 1315, 1977, 2129, 3188 |
| PspPI | GGNCC | 4 cut(s) | 839, 1314, 1868, 2378 |
| PspPPI | RGGWCCY | 1 cut(s) | 1314 |
| PsuI | RGATCY | 1 cut(s) | 1375 |
| PsyI | GACNNNGTC | 1 cut(s) | 1229 |
| PvuII | CAGCTG | 1 cut(s) | 131 |
| RsaI | GTAC | 7 cut(s) | 753, 787, 1331, 1487, 2975, 3164, 3216 |
| RsaNI | GTAC | 7 cut(s) | 752, 786, 1330, 1486, 2974, 3163, 3215 |
| SacI | GAGCTC | 1 cut(s) | 3283 |
| SapI | GCTCTTC | 3 cut(s) | 590, 733, 933 |
| SatI | GCNGC | 8 cut(s) | 132, 1290, 1460, 2196, 2244, 2574, 3357, 3383 |
| Sau96I | GGNCC | 4 cut(s) | 839, 1314, 1868, 2378 |
| SchI | GAGTC | 4 cut(s) | 301, 386, 453, 1151 |
| ScrFI | CCNGG | 8 cut(s) | 416, 843, 1134, 1436, 1563, 1612, 2382, 2525 |
| SduI | GDGCHC | 3 cut(s) | 1081, 3283, 3446 |
| SexAI | ACCWGGT | 1 cut(s) | 2380 |
| SfaNI | GCATC | 5 cut(s) | 706, 1375, 2084, 2230, 2958 |
| SfcI | CTRYAG | 2 cut(s) | 163, 3037 |
| Sfr274I | CTCGAG | 1 cut(s) | 3276 |
| SinI | GGWCC | 3 cut(s) | 839, 1314, 2378 |
| SlaI | CTCGAG | 1 cut(s) | 3276 |
| SmlI | CTYRAG | 5 cut(s) | 74, 1214, 1872, 2924, 3276 |
| SmoI | CTYRAG | 5 cut(s) | 74, 1214, 1872, 2924, 3276 |
| SphI | GCATGC | 1 cut(s) | 3339 |
| SseBI | AGGCCT | 1 cut(s) | 277 |
| SsiI | CCGC | 6 cut(s) | 134, 2176, 2189, 2285, 3171, 3382 |
| SspI | AATATT | 2 cut(s) | 1005, 1500 |
| SstI | GAGCTC | 1 cut(s) | 3283 |
| StuI | AGGCCT | 1 cut(s) | 277 |
| StyD4I | CCNGG | 8 cut(s) | 414, 841, 1132, 1434, 1561, 1610, 2380, 2523 |
| StyI | CCWWGG | 3 cut(s) | 1053, 1252, 2686 |
| TaiI | ACGT | 4 cut(s) | 13, 919, 3244, 3439 |
| TaqI | TCGA | 6 cut(s) | 196, 305, 2389, 2773, 2859, 3277 |
| TatI | WGTACW | 2 cut(s) | 785, 2973 |
| TauI | GCSGC | 1 cut(s) | 3385 |
| TfiI | GAWTC | 9 cut(s) | 1060, 1121, 1246, 1576, 1829, 1942, 2081, 2824, 2894 |
| TseFI | GTSAC | 6 cut(s) | 169, 379, 459, 503, 1619, 1735 |
| TseI | GCWGC | 7 cut(s) | 131, 1289, 1459, 2195, 2243, 2573, 3356 |
| Tsp45I | GTSAC | 6 cut(s) | 169, 379, 459, 503, 1619, 1735 |
| TspGWI | ACGGA | 4 cut(s) | 478, 748, 1163, 2014 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1229 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3290 |
| Vha464I | CTTAAG | 1 cut(s) | 2924 |
| VpaK11BI | GGWCC | 3 cut(s) | 839, 1314, 2378 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2513 |
| XapI | RAATTY | 9 cut(s) | 336, 352, 1656, 1786, 1958, 2449, 2721, 3095, 3257 |
| XbaI | TCTAGA | 1 cut(s) | 1883 |
| XceI | RCATGY | 6 cut(s) | 487, 1492, 1549, 2291, 2750, 3339 |
| XhoI | CTCGAG | 1 cut(s) | 3276 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1501 |