Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000445.1

Orthogroup ID

OG0010433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2993 .. 13185

Gene Structure 10193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000445.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3519 bp

atggacgatcctcgcaagcatcaggtctcgttgaggggcgcgagcgccaaggaaattaccagagacgccctgctcgagaaggtctctcaggaacgagagcttcgccaatatgccagacgcgccaccgctgctgccctcttccttcagagagtgtggaggcgctatagggtgactaaggtggtggctttggagctcagagaggagtgggagaagtgtgtgaagcagaagcaagctggtttagtcatcacagcaacctggatttctagtcatgtagtgaggccttttcttttcttcattacatgtttatcgattcggaagaggagaattgaagccacagaagttgactctatgaagagttgctttcaaatgctactagacagcatgaattccactgactcgaagaagagctattgctctctggcaattggaactctcgaggagagaagaatctggggttatcagacgcggaagctgatttctctttgcatgtttgttcttttggaatgtgacaagtcccgcccaggaagtcaagacattgttgctctcgcgtccttggcaatgcggcttgttgttgtcttaactgatgtcaaagggtggaagtgtattgatgaacatgactgtcagattgcggatgcagcagtgaaggatttagttcggtttatggggagcggtgaaagtggtctttactcatcgattagaatatacattaacacattggatgctccttgctcttcacggacaaaaagtagtgtacatacagatgacagatttttgattactgcaagcacaataactttggctcttaggccatttcatgcgtcaaagtctgatctaaatggccttggcttgttggatgtcaataatgttgctgagaagtactctgtgtttctgcttacaattccttggcttactcagcgtctgccagctgtacttatacctgcaatgaggcacaaatccattctccaaccttgttttcaaacattactgattttgaaagagaaaatattaaaggagatgctggccgtggatcagtcaaagtttcatgtttcccccaaggttattccaccagttggttgggctcttgcaaacattatatgcctagctacagggggagagagtgattctgttgatcctggaggtttccatcaagagttggattgtgcattttacgtacgtgctgttaatagtcttgcagaaaacttattgtctaggcttgagaatgttgactctgtccaggagaatcaggatctccaaagtgaagttgaaaccagtgaaaagccaagctgtacagtttcatgtgagactgaaatgacccatggatctattaagttgtcgttcttggatatgcttaggcctgtttctcagcaatggcaccttacagatcttttggcaatagtgaataaacttggtcacactcaagggtctgagactatgacgccaaaaagactggaatattcagggacgttggaattgctggatattgtgcatttttattctttcatgctaagaatgttttcattattgaatccaagggttggctcattgcctgtccttaatatgctatcgtttactcctggatttcttgtaagtctatggggagcgttggaaacctatctttttcctaggaatgtttgcagtggtcataaaccctatgatatcattagtaaaacttctggtagtggaaaagatgggaattttggaaaaaagaaaaagcatggcaataatgatggaggtaataagtgggtcagtgtccttcataaaattacgggtaaatcacaagcggagattaatcatacggatttgcgtggtaatcaacccaagcctagacttgttgaaaaagaggattcttctgatgtttgggatatagaacctgtgaggcctggtcctcaaggtatttcaagagacatgtcatatatgcttcatctattctgtgcaagctattcacacctgcttttgattcttgatgacatagagttttatgaaaaacaggtaccatttacactggagcaacaacggcaaattgcttctgttctcaatacattggtttataatgggttttctcaaagtattggacaggagggtagaccccttatggagtctgctgtcagatgcctgcatttaatatatgaaagggattgcaggcaccagttctgcccccctgttttgtggctttcacctgctagaaagaaccgcccaccaattgcggtagctgccagaactcatgaagttttgtcagctaatcaaaaatcagatgactctctggctgtgcaaagtataggctctgttataactacaactccgcatgtatttccatttgaagaaagagtggaaatgtttagagagtttatcaagatggacaaagcctcccggaaaatggctggtgaggtttctggccctagttcacgatcagttgagatagtagttcgtcgtggtcatattgttgaagatggatttcagcagttaaactccctgggatcaagattaaagtcatccatccatgtttcatttgtcagtgaatgtggccttccagaggctggcctcgactatggtggattatctaaagagtttttgaccgatatatcaaaagctgcatttgctcctgagtatgggctattctcccagacctcaacctcagccagacttctaattcctaatccatctgcaagatatctagataatggtatccagatgattgagttccttggaagagttgttgggaaagctctctatgaaggaatactgctagattactcattttctcatgtttttgtacaaaaactgttgggtcgatatagcttcctcgatgaactatcaacacttgatccagagatttacaggaatctcatgtatgttaagcattatgatggtgatgttgaggaactgtgtctggactttacggtaactgaagagtcatttggaaaacgacatgttattgagctcaagcctggtggaaaggatgttactgtgacaagcaagaacaaaatgcagtacatccatgcaattgctgattataagcttaaccgacagatgttccttttttcaaatgcattctatagagggttaattgatctcatatcaccatcttggctaaaattatttaatgcaggggaatttaatcagttgctttcagggggaaaccatgacattgatgttgatgacttgagaaagaacacacgatacactggtggttactctgaagggacccgaacgattaaaatcttttgggaggtaattagcggatttgaacctaaagaacggtgtatgcttctgaaattcgtcaccagttgttctcgagctccattacttgggtttaaacacttgcaaccaacgtttacaattcataaggttgcatgcgatatccctctgtgggcaacaatgagaggagaggatgtagagcggcttccatcagcctcaacttgctacaatactttgaagcttccaacttacaagcgtccaagcacgttgagagaaaaacttctatatgcaatcagttctaatgcaggttttgaactttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1172

Amino Acids

132.14

Weight (kDa)

8.37

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53090 AT3G53090
fragaria_vesca	FvH4_6g17370
malus_domestica	MD12G1101300.v1.1 MD14G1095600.v1.1
prunus_persica	Prupe.7G121800_v2.0.a1
pyrus_communis	pycom14g09370
rosa_chinensis	RchiOBHm_Chr3g0471541
rosa_laevigata	RLG00000024156 RLG00000024169
rosa_multiflora	Rmu_sc0011843.1_g000001 Rmu_sc0039862.1_g000001 Rmu_ssc0000445.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409820
rosa_rugosa	Rorug03G0118300 Rorug03G0118400
rosa_samantha	Rh3AG168500 Rh3BG194000 Rh3CG184500 Rh3DG181200
rosa_wichuraiana	Rw3G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	2049, 2288, 3012
AarI	CACCTGC	2 cut(s)	1956, 2185
Acc36I	ACCTGC	4 cut(s)	946, 1956, 2185, 3491
Acc65I	GGTACC	1 cut(s)	1990
AccB1I	GGYRCC	3 cut(s)	1371, 1990, 2142
AccB7I	CCANNNNNTGG	4 cut(s)	1070, 1535, 2534, 3305
AccBSI	CCGCTC	2 cut(s)	669, 3397
AccI	GTMKAC	1 cut(s)	2083
AccII	CGCG	4 cut(s)	41, 120, 466, 548
AclI	AACGTT	1 cut(s)	3329
AclWI	GGATC	7 cut(s)	2, 1035, 1124, 1254, 1327, 2482, 2816
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	4 cut(s)	385, 1693, 3110, 3272
AcuI	CTGAAG	3 cut(s)	128, 2925, 3216
AcyI	GRCGYC	2 cut(s)	66, 1436
AfaI	GTAC	8 cut(s)	753, 878, 930, 1173, 1288, 1992, 2772, 2990
AfiI	CCNNNNNNNGG	8 cut(s)	1070, 1535, 2374, 2530, 2534, 2606, 3305, 3367
AflIII	ACRYGT	3 cut(s)	299, 1905, 2926
AjnI	CCWGG	8 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2469, 2944
AjuI	GAANNNNNNNTTGG	4 cut(s)	957, 989, 2898, 2930
Alw21I	GWGCWC	3 cut(s)	195, 2940, 3298
Alw26I	GTCTC	6 cut(s)	31, 57, 88, 1295, 1421, 1896
AlwI	GGATC	7 cut(s)	2, 1035, 1124, 1254, 1327, 2482, 2816
AlwNI	CAGNNNCTG	2 cut(s)	919, 2534
Ama87I	CYCGRG	3 cut(s)	74, 434, 3291
AoxI	GGCC	9 cut(s)	278, 806, 838, 1020, 1352, 1877, 2392, 2521, 2536
ApeKI	GCWGC	5 cut(s)	128, 131, 635, 2210, 2588
ApoI	RAATTY	4 cut(s)	385, 1693, 3110, 3272
AseI	ATTAAT	1 cut(s)	1788
Asp700I	GAANNNNTTC	2 cut(s)	1513, 3474
Asp718I	GGTACC	1 cut(s)	1990
AspA2I	CCTAGG	1 cut(s)	1622
AspLEI	GCGC	4 cut(s)	41, 47, 122, 162
AspS9I	GGNCC	3 cut(s)	1883, 2393, 3201
AsuC2I	CCSGG	1 cut(s)	2368
AsuHPI	GGTGA	7 cut(s)	181, 683, 2166, 2393, 2879, 3069, 3271
AvaI	CYCGRG	3 cut(s)	74, 434, 3291
AvaII	GGWCC	2 cut(s)	1883, 3201
AvrII	CCTAGG	1 cut(s)	1622
BaeI	ACNNNNGTAYC	2 cut(s)	3169, 3202
BanI	GGYRCC	3 cut(s)	1371, 1990, 2142
BanII	GRGCYC	4 cut(s)	195, 1081, 2940, 3298
BarI	GAAGNNNNNNTAC	2 cut(s)	3384, 3416
Bbv12I	GWGCWC	3 cut(s)	195, 2940, 3298
BbvCI	CCTCAGC	1 cut(s)	2632
BbvI	GCAGC	5 cut(s)	115, 118, 647, 2197, 2575
BceAI	ACGGC	2 cut(s)	1007, 2030
BciT130I	CCWGG	8 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2471, 2946
BciVI	GTATCC	1 cut(s)	2693
BcnI	CCSGG	1 cut(s)	2368
BcoDI	GTCTC	6 cut(s)	31, 57, 88, 1295, 1421, 1896
BfmI	CTRYAG	3 cut(s)	163, 1104, 3052
BfoI	RGCGCY	2 cut(s)	48, 163
BfuAI	ACCTGC	4 cut(s)	946, 1956, 2185, 3491
BfuI	GTATCC	1 cut(s)	2693
BglII	AGATCT	1 cut(s)	1381
BisI	GCNGC	7 cut(s)	129, 132, 563, 636, 2211, 2589, 3398
BlnI	CCTAGG	1 cut(s)	1622
BlsI	GCNGC	7 cut(s)	130, 133, 564, 637, 2212, 2590, 3399
BmcAI	AGTACT	1 cut(s)	878
Bme1390I	CCNGG	9 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2368, 2471, 2946
Bme18I	GGWCC	2 cut(s)	1883, 3201
BmeT110I	CYCGRG	3 cut(s)	74, 434, 3291
BmgT120I	GGNCC	3 cut(s)	1883, 2393, 3201
BmiI	GGNNCC	5 cut(s)	1373, 1992, 2144, 3202, 3203
BmrFI	CCNGG	9 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2368, 2471, 2946
BmsI	GCATC	5 cut(s)	28, 622, 709, 1005, 2099
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 863, 895
BpmI	CTGGAG	2 cut(s)	1155, 2024
Bpu10I	CCTNAGC	2 cut(s)	1349, 2632
BpuEI	CTTGAG	5 cut(s)	1235, 1401, 1872, 2924, 3181
BpuMI	CCSGG	1 cut(s)	2368
Bsa29I	ATCGAT	2 cut(s)	308, 692
BsaAI	YACGTR	2 cut(s)	1171, 1175
BsaBI	GATNNNNATC	1 cut(s)	3215
BsaHI	GRCGYC	2 cut(s)	66, 1436
BsaI	GGTCTC	2 cut(s)	31, 88
BsaXI	ACNNNNNCTCC	6 cut(s)	2281, 2311, 2348, 2378, 3375, 3405
Bsc4I	CCNNNNNNNGG	8 cut(s)	1070, 1535, 2374, 2530, 2534, 2606, 3305, 3367
Bse1I	ACTGG	7 cut(s)	1067, 1269, 1452, 2007, 2146, 3187, 3282
Bse3DI	GCAATG	4 cut(s)	564, 948, 1373, 1541
Bse8I	GATNNNNATC	1 cut(s)	3215
BseBI	CCWGG	8 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2471, 2946
BseCI	ATCGAT	2 cut(s)	308, 692
BseGI	GGATG	8 cut(s)	637, 724, 859, 2489, 2493, 2962, 2991, 3394
BseJI	GATNNNNATC	1 cut(s)	3215
BseLI	CCNNNNNNNGG	8 cut(s)	1070, 1535, 2374, 2530, 2534, 2606, 3305, 3367
BseMI	GCAATG	4 cut(s)	564, 948, 1373, 1541
BseMII	CTCAG	8 cut(s)	101, 208, 861, 926, 1376, 1416, 2592, 2646
BseNI	ACTGG	7 cut(s)	1067, 1269, 1452, 2007, 2146, 3187, 3282
BseRI	GAGGAG	4 cut(s)	215, 334, 452, 3396
BseXI	GCAGC	5 cut(s)	115, 118, 647, 2197, 2575
Bsh1236I	CGCG	4 cut(s)	41, 120, 466, 548
BshFI	GGCC	9 cut(s)	280, 808, 840, 1022, 1354, 1879, 2394, 2523, 2538
BshNI	GGYRCC	3 cut(s)	1371, 1990, 2142
BshVI	ATCGAT	2 cut(s)	308, 692
BsiHKAI	GWGCWC	3 cut(s)	195, 2940, 3298
BsiHKCI	CYCGRG	3 cut(s)	74, 434, 3291
BsiSI	CCGG	1 cut(s)	2368
BsiWI	CGTACG	1 cut(s)	1171
BslFI	GGGAC	3 cut(s)	499, 1474, 3214
BslI	CCNNNNNNNGG	8 cut(s)	1070, 1535, 2374, 2530, 2534, 2606, 3305, 3367
BsmAI	GTCTC	6 cut(s)	31, 57, 88, 1295, 1421, 1896
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	3 cut(s)	499, 1474, 3214
BsmI	GAATGC	1 cut(s)	3047
BsnI	GGCC	9 cut(s)	280, 808, 840, 1022, 1354, 1879, 2394, 2523, 2538
Bso31I	GGTCTC	2 cut(s)	31, 88
BsoBI	CYCGRG	3 cut(s)	74, 434, 3291
Bsp1286I	GDGCHC	4 cut(s)	195, 1081, 2940, 3298
Bsp1407I	TGTACA	3 cut(s)	751, 1286, 2770
Bsp19I	CCATGG	1 cut(s)	1315
BspANI	GGCC	9 cut(s)	280, 808, 840, 1022, 1354, 1879, 2394, 2523, 2538
BspCNI	CTCAG	8 cut(s)	100, 207, 862, 925, 1375, 1417, 2593, 2645
BspDI	ATCGAT	2 cut(s)	308, 692
BspFNI	CGCG	4 cut(s)	41, 120, 466, 548
BspHI	TCATGA	1 cut(s)	2221
BspLI	GGNNCC	5 cut(s)	1373, 1992, 2144, 3202, 3203
BspMI	ACCTGC	4 cut(s)	946, 1956, 2185, 3491
BspPI	GGATC	7 cut(s)	2, 1035, 1124, 1254, 1327, 2482, 2816
BspQI	GCTCTTC	2 cut(s)	398, 736
BspT107I	GGYRCC	3 cut(s)	1371, 1990, 2142
BspTNI	GGTCTC	2 cut(s)	31, 88
BsrBI	CCGCTC	2 cut(s)	669, 3397
BsrDI	GCAATG	4 cut(s)	564, 948, 1373, 1541
BsrGI	TGTACA	3 cut(s)	751, 1286, 2770
BsrI	ACTGG	7 cut(s)	1067, 1269, 1452, 2007, 2146, 3187, 3282
BssNI	GRCGYC	2 cut(s)	66, 1436
BssT1I	CCWWGG	9 cut(s)	48, 552, 841, 902, 1053, 1315, 1529, 1622, 2701
Bst2UI	CCWGG	8 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2471, 2946
Bst4CI	ACNGT	7 cut(s)	620, 1291, 2781, 2883, 2899, 2965, 3258
Bst6I	CTCTTC	7 cut(s)	143, 311, 347, 398, 736, 2701, 2901
BstACI	GRCGYC	2 cut(s)	66, 1436
BstAUI	TGTACA	3 cut(s)	751, 1286, 2770
BstBAI	YACGTR	2 cut(s)	1171, 1175
BstDSI	CCRYGG	2 cut(s)	1023, 1315
BstENI	CCTNNNNNAGG	1 cut(s)	2528
BstF5I	GGATG	8 cut(s)	637, 724, 859, 2489, 2493, 2962, 2991, 3394
BstFNI	CGCG	4 cut(s)	41, 120, 466, 548
BstH2I	RGCGCY	2 cut(s)	48, 163
BstHHI	GCGC	4 cut(s)	41, 47, 122, 162
BstMAI	GTCTC	6 cut(s)	31, 57, 88, 1295, 1421, 1896
BstMWI	GCNNNNNNNGC	8 cut(s)	119, 128, 554, 635, 913, 2014, 2210, 2594
BstNI	CCWGG	8 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2471, 2946
BstNSI	RCATGY	6 cut(s)	303, 490, 1909, 2306, 2930, 3354
BstSCI	CCNGG	9 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2366, 2469, 2944
BstSFI	CTRYAG	3 cut(s)	163, 1104, 3052
BstSNI	TACGTA	1 cut(s)	1171
BstUI	CGCG	4 cut(s)	41, 120, 466, 548
BstV1I	GCAGC	5 cut(s)	115, 118, 647, 2197, 2575
BstX2I	RGATCY	3 cut(s)	1246, 1319, 1381
BstXI	CCANNNNNNTGG	1 cut(s)	1074
BstYI	RGATCY	3 cut(s)	1246, 1319, 1381
Bsu15I	ATCGAT	2 cut(s)	308, 692
BsuI	GTATCC	1 cut(s)	2693
BsuRI	GGCC	9 cut(s)	280, 808, 840, 1022, 1354, 1879, 2394, 2523, 2538
BsuTUI	ATCGAT	2 cut(s)	308, 692
BtgI	CCRYGG	2 cut(s)	1023, 1315
BtsCI	GGATG	8 cut(s)	637, 724, 859, 2489, 2493, 2962, 2991, 3394
BtsI	GCAGTG	2 cut(s)	645, 1642
BtsIMutI	CAGTG	8 cut(s)	390, 645, 1276, 1642, 1753, 2000, 2518, 3180
BveI	ACCTGC	4 cut(s)	946, 1956, 2185, 3491
CaiI	CAGNNNCTG	2 cut(s)	919, 2534
CciI	TCATGA	1 cut(s)	2221
CfoI	GCGC	4 cut(s)	41, 47, 122, 162
Cfr13I	GGNCC	3 cut(s)	1883, 2393, 3201
ClaI	ATCGAT	2 cut(s)	308, 692
CseI	GACGC	8 cut(s)	74, 126, 472, 537, 807, 905, 1444, 3440
Csp6I	GTAC	8 cut(s)	752, 877, 929, 1172, 1287, 1991, 2771, 2989
CspCI	CAANNNNNGTGG	4 cut(s)	322, 357, 2929, 2964
CviQI	GTAC	8 cut(s)	752, 877, 929, 1172, 1287, 1991, 2771, 2989
DraI	TTTAAA	1 cut(s)	3313
EaeI	YGGCCR	1 cut(s)	1020
Eam1104I	CTCTTC	7 cut(s)	143, 311, 347, 398, 736, 2701, 2901
EarI	CTCTTC	7 cut(s)	143, 311, 347, 398, 736, 2701, 2901
Ecl136II	GAGCTC	3 cut(s)	193, 2938, 3296
Eco105I	TACGTA	1 cut(s)	1171
Eco130I	CCWWGG	9 cut(s)	48, 552, 841, 902, 1053, 1315, 1529, 1622, 2701
Eco147I	AGGCCT	3 cut(s)	280, 1354, 1879
Eco24I	GRGCYC	4 cut(s)	195, 1081, 2940, 3298
Eco31I	GGTCTC	2 cut(s)	31, 88
Eco32I	GATATC	3 cut(s)	1657, 2669, 3358
Eco47I	GGWCC	2 cut(s)	1883, 3201
Eco53kI	GAGCTC	3 cut(s)	193, 2938, 3296
Eco57I	CTGAAG	3 cut(s)	128, 2925, 3216
Eco88I	CYCGRG	3 cut(s)	74, 434, 3291
EcoICRI	GAGCTC	3 cut(s)	193, 2938, 3296
EcoNI	CCTNNNNNAGG	1 cut(s)	2528
EcoO109I	RGGNCCY	1 cut(s)	3201
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	8 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2469, 2944
EcoRV	GATATC	3 cut(s)	1657, 2669, 3358
EcoT14I	CCWWGG	9 cut(s)	48, 552, 841, 902, 1053, 1315, 1529, 1622, 2701
EcoT22I	ATGCAT	1 cut(s)	3049
EcoT38I	GRGCYC	4 cut(s)	195, 1081, 2940, 3298
ErhI	CCWWGG	9 cut(s)	48, 552, 841, 902, 1053, 1315, 1529, 1622, 2701
Esp3I	CGTCTC	1 cut(s)	57
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	3 cut(s)	499, 1474, 3214
FauI	CCCGC	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	2083
Fnu4HI	GCNGC	7 cut(s)	129, 132, 563, 636, 2211, 2589, 3398
FokI	GGATG	8 cut(s)	644, 731, 866, 2476, 2480, 2969, 2978, 3401
FriOI	GRGCYC	4 cut(s)	195, 1081, 2940, 3298
Fsp4HI	GCNGC	7 cut(s)	129, 132, 563, 636, 2211, 2589, 3398
GlaI	GCGC	4 cut(s)	40, 46, 121, 161
GluI	GCNGC	7 cut(s)	129, 132, 563, 636, 2211, 2589, 3398
GsuI	CTGGAG	2 cut(s)	1155, 2024
HaeII	RGCGCY	2 cut(s)	48, 163
HaeIII	GGCC	9 cut(s)	280, 808, 840, 1022, 1354, 1879, 2394, 2523, 2538
HapII	CCGG	1 cut(s)	2368
HgaI	GACGC	8 cut(s)	74, 126, 472, 537, 807, 905, 1444, 3440
HhaI	GCGC	4 cut(s)	41, 47, 122, 162
Hin1I	GRCGYC	2 cut(s)	66, 1436
Hin6I	GCGC	4 cut(s)	39, 45, 120, 160
HinP1I	GCGC	4 cut(s)	39, 45, 120, 160
HincII	GTYRAC	2 cut(s)	343, 1225
HindII	GTYRAC	2 cut(s)	343, 1225
HindIII	AAGCTT	2 cut(s)	3014, 3434
HpaII	CCGG	1 cut(s)	2368
HphI	GGTGA	7 cut(s)	181, 683, 2166, 2393, 2879, 3069, 3271
Hpy166II	GTNNAC	7 cut(s)	343, 752, 1225, 1569, 2084, 2402, 3333
Hpy8I	GTNNAC	7 cut(s)	343, 752, 1225, 1569, 2084, 2402, 3333
Hpy99I	CGWCG	1 cut(s)	2430
HpyAV	CCTTC	7 cut(s)	73, 152, 637, 1763, 2534, 2726, 3191
HpyCH4III	ACNGT	7 cut(s)	620, 1291, 2781, 2883, 2899, 2965, 3258
HpyCH4IV	ACGT	5 cut(s)	1170, 1174, 1463, 3329, 3461
HpyF10VI	GCNNNNNNNGC	8 cut(s)	119, 128, 554, 635, 913, 2014, 2210, 2594
HpySE526I	ACGT	5 cut(s)	1170, 1174, 1463, 3329, 3461
Hsp92I	GRCGYC	2 cut(s)	66, 1436
HspAI	GCGC	4 cut(s)	39, 45, 120, 160
KflI	GGGWCCC	1 cut(s)	3201
KpnI	GGTACC	1 cut(s)	1994
LguI	GCTCTTC	2 cut(s)	398, 736
LmnI	GCTCC	7 cut(s)	190, 666, 727, 1598, 2005, 2602, 3301
Lsp1109I	GCAGC	5 cut(s)	115, 118, 647, 2197, 2575
LweI	GCATC	5 cut(s)	28, 622, 709, 1005, 2099
MaeII	ACGT	5 cut(s)	1170, 1174, 1463, 3329, 3461
MaeIII	GTNAC	8 cut(s)	169, 506, 1409, 2899, 2959, 2965, 3188, 3277
MbiI	CCGCTC	2 cut(s)	669, 3397
MfeI	CAATTG	3 cut(s)	423, 2199, 3000
MflI	RGATCY	3 cut(s)	1246, 1319, 1381
MhlI	GDGCHC	4 cut(s)	195, 1081, 2940, 3298
MlyI	GAGTC	6 cut(s)	338, 389, 1220, 2105, 2249, 2918
MmeI	TCCRAC	6 cut(s)	831, 988, 1134, 1446, 1584, 3464
Mph1103I	ATGCAT	1 cut(s)	3049
MroXI	GAANNNNTTC	2 cut(s)	1513, 3474
MslI	CAYNNNNRTG	2 cut(s)	759, 2862
MspA1I	CMGCKG	2 cut(s)	128, 926
MspI	CCGG	1 cut(s)	2368
MspR9I	CCNGG	9 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2368, 2471, 2946
MssI	GTTTAAAC	1 cut(s)	3313
MunI	CAATTG	3 cut(s)	423, 2199, 3000
Mva1269I	GAATGC	1 cut(s)	3047
MvaI	CCWGG	8 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2471, 2946
MvnI	CGCG	4 cut(s)	41, 120, 466, 548
MwoI	GCNNNNNNNGC	8 cut(s)	119, 128, 554, 635, 913, 2014, 2210, 2594
NciI	CCSGG	1 cut(s)	2368
NcoI	CCATGG	1 cut(s)	1315
NlaIV	GGNNCC	5 cut(s)	1373, 1992, 2144, 3202, 3203
NmuCI	GTSAC	5 cut(s)	169, 506, 1409, 2965, 3277
NsiI	ATGCAT	1 cut(s)	3049
NspI	RCATGY	6 cut(s)	303, 490, 1909, 2306, 2930, 3354
PaeI	GCATGC	1 cut(s)	3354
PaeR7I	CTCGAG	3 cut(s)	74, 434, 3291
PagI	TCATGA	1 cut(s)	2221
PaqCI	CACCTGC	2 cut(s)	1956, 2185
PasI	CCCWGGG	1 cut(s)	2470
PceI	AGGCCT	3 cut(s)	280, 1354, 1879
PciI	ACATGT	3 cut(s)	299, 1905, 2926
PciSI	GCTCTTC	2 cut(s)	398, 736
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	3047
PdmI	GAANNNNTTC	2 cut(s)	1513, 3474
PfeI	GAWTC	8 cut(s)	310, 447, 1121, 1240, 1525, 1844, 1957, 2839
Pfl23II	CGTACG	1 cut(s)	1171
PflFI	GACNNNGTC	1 cut(s)	1229
PflMI	CCANNNNNTGG	4 cut(s)	1070, 1535, 2534, 3305
PfoI	TCCNGGA	4 cut(s)	1132, 1233, 1573, 2366
PkrI	GCNGC	7 cut(s)	130, 133, 564, 637, 2212, 2590, 3399
PleI	GAGTC	6 cut(s)	338, 389, 1220, 2104, 2249, 2917
PmeI	GTTTAAAC	1 cut(s)	3313
PpsI	GAGTC	6 cut(s)	338, 389, 1220, 2104, 2249, 2917
Ppu21I	YACGTR	2 cut(s)	1171, 1175
PpuMI	RGGWCCY	1 cut(s)	3201
PscI	ACATGT	3 cut(s)	299, 1905, 2926
PshBI	ATTAAT	1 cut(s)	1788
PsiI	TTATAA	3 cut(s)	2049, 2288, 3012
Psp124BI	GAGCTC	3 cut(s)	195, 2940, 3298
Psp1406I	AACGTT	1 cut(s)	3329
Psp5II	RGGWCCY	1 cut(s)	3201
Psp6I	CCWGG	8 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2469, 2944
PspGI	CCWGG	8 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2469, 2944
PspLI	CGTACG	1 cut(s)	1171
PspN4I	GGNNCC	5 cut(s)	1373, 1992, 2144, 3202, 3203
PspPI	GGNCC	3 cut(s)	1883, 2393, 3201
PspPPI	RGGWCCY	1 cut(s)	3201
PsrI	GAACNNNNNNTAC	2 cut(s)	3161, 3193
PstNI	CAGNNNCTG	2 cut(s)	919, 2534
PsuI	RGATCY	3 cut(s)	1246, 1319, 1381
PsyI	GACNNNGTC	1 cut(s)	1229
PvuII	CAGCTG	1 cut(s)	926
RsaI	GTAC	8 cut(s)	753, 878, 930, 1173, 1288, 1992, 2772, 2990
RsaNI	GTAC	8 cut(s)	752, 877, 929, 1172, 1287, 1991, 2771, 2989
RseI	CAYNNNNRTG	2 cut(s)	759, 2862
SacI	GAGCTC	3 cut(s)	195, 2940, 3298
SapI	GCTCTTC	2 cut(s)	398, 736
SatI	GCNGC	7 cut(s)	129, 132, 563, 636, 2211, 2589, 3398
Sau96I	GGNCC	3 cut(s)	1883, 2393, 3201
ScaI	AGTACT	1 cut(s)	878
SchI	GAGTC	6 cut(s)	338, 389, 1220, 2105, 2249, 2918
ScrFI	CCNGG	9 cut(s)	256, 522, 1134, 1235, 1575, 1881, 2368, 2471, 2946
SduI	GDGCHC	4 cut(s)	195, 1081, 2940, 3298
SfaNI	GCATC	5 cut(s)	28, 622, 709, 1005, 2099
SfcI	CTRYAG	3 cut(s)	163, 1104, 3052
Sfr274I	CTCGAG	3 cut(s)	74, 434, 3291
SinI	GGWCC	2 cut(s)	1883, 3201
SlaI	CTCGAG	3 cut(s)	74, 434, 3291
SmiMI	CAYNNNNRTG	2 cut(s)	759, 2862
SmlI	CTYRAG	8 cut(s)	74, 434, 1214, 1416, 1887, 2939, 3160, 3291
SmoI	CTYRAG	8 cut(s)	74, 434, 1214, 1416, 1887, 2939, 3160, 3291
SnaBI	TACGTA	1 cut(s)	1171
SphI	GCATGC	1 cut(s)	3354
SseBI	AGGCCT	3 cut(s)	280, 1354, 1879
SspI	AATATT	2 cut(s)	1005, 1454
SstI	GAGCTC	3 cut(s)	195, 2940, 3298
StuI	AGGCCT	3 cut(s)	280, 1354, 1879
StyD4I	CCNGG	9 cut(s)	254, 520, 1132, 1233, 1573, 1879, 2366, 2469, 2944
StyI	CCWWGG	9 cut(s)	48, 552, 841, 902, 1053, 1315, 1529, 1622, 2701
TaaI	ACNGT	7 cut(s)	620, 1291, 2781, 2883, 2899, 2965, 3258
TaiI	ACGT	5 cut(s)	1173, 1177, 1466, 3332, 3464
TaqI	TCGA	9 cut(s)	75, 308, 398, 435, 692, 2541, 2788, 2802, 3292
TaqII	GACCGA	1 cut(s)	2588
TatI	WGTACW	6 cut(s)	751, 876, 928, 1286, 2770, 2988
TauI	GCSGC	2 cut(s)	565, 3400
TfiI	GAWTC	8 cut(s)	310, 447, 1121, 1240, 1525, 1844, 1957, 2839
TscAI	CASTG	8 cut(s)	397, 645, 1276, 1642, 1753, 2007, 2518, 3187
TseFI	GTSAC	5 cut(s)	169, 506, 1409, 2965, 3277
TseI	GCWGC	5 cut(s)	128, 131, 635, 2210, 2588
Tsp45I	GTSAC	5 cut(s)	169, 506, 1409, 2965, 3277
TspGWI	ACGGA	2 cut(s)	751, 1811
TspRI	CASTG	8 cut(s)	397, 645, 1276, 1642, 1753, 2007, 2518, 3187
Tth111I	GACNNNGTC	1 cut(s)	1229
Van91I	CCANNNNNTGG	4 cut(s)	1070, 1535, 2534, 3305
VpaK11BI	GGWCC	2 cut(s)	1883, 3201
VspI	ATTAAT	1 cut(s)	1788
XagI	CCTNNNNNAGG	1 cut(s)	2528
XapI	RAATTY	4 cut(s)	385, 1693, 3110, 3272
XbaI	TCTAGA	1 cut(s)	2671
XceI	RCATGY	6 cut(s)	303, 490, 1909, 2306, 2930, 3354
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1071
XhoI	CTCGAG	3 cut(s)	74, 434, 3291
XmaJI	CCTAGG	1 cut(s)	1622
XmiI	GTMKAC	1 cut(s)	2083
XmnI	GAANNNNTTC	2 cut(s)	1513, 3474
ZrmI	AGTACT	1 cut(s)	878
Zsp2I	ATGCAT	1 cut(s)	3049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.