Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039862.1

Orthogroup ID

OG0010433

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1880

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039862.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1063 bp

atgacccatggatctattaagttgtcgttcttggatatgcttaggcctgtttctcagcagtggcaccttacagatcttttggcaatagtgaataaacttggtcacactcaagggtctgagactatgacgccaaaaagactggaatattcagggacgttggaattgctggatattgtgcatttttattctttcatgctaagaatgttttcattattgaatccaagggttggctcattgcctgtccttaatatgctatcgtttactcctggatttcttgtaagtctatggggagcgttggaaacctatctttttcctaggaatgtttgcagtggtcataaaccctatgatatcattagtaaaacttcaggtagtggaaaagatgggaattttggaaaaaagaaaaagcatggcaataatgatggaggtaataagtgggtcagtgtccttcataaaattacgggtaaatcacaagcggagattaatcatacggatttgcgtggtaatcaacccaagcctagacttgttgaaaaagaggattcttctgatgtttgggatatagaacctgtgaggcctggtcctcaaggtatttcaagagacatgtcatatatgcttcatctattctgtgcaagctattcacacctgcttttgattcttgatgacatagagttttatgaaaaacaggtaccatttacactggagcaacaacggcaaattgcttctgttctcaatacattggtttataatgggttttctcaaagtattggacaggagggtagaccccttatggagtctgctgtcagatgcctgcatttaatatatgaaagggattgcaggcaccagttctgcccccctgttttgtggctttcacctgctagaaagaaccgcccaccaattgcggtagctgccagaactcatgaagttttgtcagctaatcaaaaatcagatgactctctggctgtgcaaagtataggctctgttataactacaactccgcatgtatttccatttgaagaaagagtggaaatgtttagagagtttatcaagatggacaaagcctcccgga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

354

Amino Acids

40.13

Weight (kDa)

8.7

Isoelectric Point (pI)

43.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53090 AT3G53090
fragaria_vesca	FvH4_6g17370
malus_domestica	MD12G1101300.v1.1 MD14G1095600.v1.1
prunus_persica	Prupe.7G121800_v2.0.a1
pyrus_communis	pycom14g09370
rosa_chinensis	RchiOBHm_Chr3g0471541
rosa_laevigata	RLG00000024156 RLG00000024169
rosa_multiflora	Rmu_sc0011843.1_g000001 Rmu_sc0039862.1_g000001 Rmu_ssc0000445.1_g000002
rosa_roxburghii	Rroxscaffold_6G00409820
rosa_rugosa	Rorug03G0118300 Rorug03G0118400
rosa_samantha	Rh3AG168500 Rh3BG194000 Rh3CG184500 Rh3DG181200
rosa_wichuraiana	Rw3G015880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	741, 980
AarI	CACCTGC	2 cut(s)	648, 877
Acc36I	ACCTGC	2 cut(s)	648, 877
Acc65I	GGTACC	1 cut(s)	682
AccB1I	GGYRCC	3 cut(s)	63, 682, 834
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	775
AciI	CCGC	4 cut(s)	473, 883, 896, 992
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	4 cut(s)	217, 527, 591, 1010
AjnI	CCWGG	2 cut(s)	265, 571
AluBI	AGCT	3 cut(s)	630, 902, 929
AluI	AGCT	3 cut(s)	630, 902, 929
Alw26I	GTCTC	2 cut(s)	113, 588
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	44, 569
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	205
Asp718I	GGTACC	1 cut(s)	682
AspA2I	CCTAGG	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	1060
AsuHPI	GGTGA	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	575
AvrII	CCTAGG	1 cut(s)	314
BanI	GGYRCC	3 cut(s)	63, 682, 834
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	3 cut(s)	374, 413, 1039
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	2 cut(s)	267, 573
BcnI	CCSGG	1 cut(s)	1060
BcoDI	GTCTC	2 cut(s)	113, 588
BfaI	CTAG	3 cut(s)	315, 516, 873
BfuAI	ACCTGC	2 cut(s)	648, 877
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	903
BlnI	CCTAGG	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	904
Bme1390I	CCNGG	3 cut(s)	267, 573, 1060
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	3 cut(s)	65, 684, 836
BmrFI	CCNGG	3 cut(s)	267, 573, 1060
BmsI	GCATC	1 cut(s)	791
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	2 cut(s)	93, 564
BpuMI	CCSGG	1 cut(s)	1060
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	7, 221, 314
BsaXI	ACNNNNNCTCC	3 cut(s)	973, 1003, 1040
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	3 cut(s)	144, 699, 838
Bse3DI	GCAATG	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	267, 573
BseDI	CCNNGG	3 cut(s)	7, 221, 314
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	233
BseMII	CTCAG	2 cut(s)	68, 108
BseNI	ACTGG	3 cut(s)	144, 699, 838
BseXI	GCAGC	1 cut(s)	889
BshFI	GGCC	2 cut(s)	46, 571
BshNI	GGYRCC	3 cut(s)	63, 682, 834
BsiSI	CCGG	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	113, 588
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	2 cut(s)	46, 571
Bsp143I	GATC	2 cut(s)	11, 73
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	4 cut(s)	473, 883, 896, 992
BspANI	GGCC	2 cut(s)	46, 571
BspCNI	CTCAG	2 cut(s)	67, 109
BspHI	TCATGA	1 cut(s)	913
BspLI	GGNNCC	3 cut(s)	65, 684, 836
BspMI	ACCTGC	2 cut(s)	648, 877
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	3 cut(s)	63, 682, 834
BsrDI	GCAATG	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	144, 699, 838
BssECI	CCNNGG	3 cut(s)	7, 221, 314
BssMI	GATC	2 cut(s)	11, 73
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	3 cut(s)	7, 221, 314
Bst2UI	CCWGG	2 cut(s)	267, 573
BstACI	GRCGYC	1 cut(s)	128
BstC8I	GCNNGC	3 cut(s)	628, 806, 833
BstDEI	CTNAG	4 cut(s)	41, 54, 117, 197
BstDSI	CCRYGG	1 cut(s)	7
BstKTI	GATC	2 cut(s)	14, 76
BstMAI	GTCTC	2 cut(s)	113, 588
BstMBI	GATC	2 cut(s)	11, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 902
BstNI	CCWGG	2 cut(s)	267, 573
BstNSI	RCATGY	2 cut(s)	601, 998
BstSCI	CCNGG	3 cut(s)	265, 571, 1058
BstV1I	GCAGC	1 cut(s)	889
BstX2I	RGATCY	2 cut(s)	11, 73
BstYI	RGATCY	2 cut(s)	11, 73
BsuRI	GGCC	2 cut(s)	46, 571
BtgI	CCRYGG	1 cut(s)	7
BtsI	GCAGTG	2 cut(s)	65, 334
BtsIMutI	CAGTG	4 cut(s)	65, 334, 445, 692
BveI	ACCTGC	2 cut(s)	648, 877
Cac8I	GCNNGC	3 cut(s)	628, 806, 833
CciI	TCATGA	1 cut(s)	913
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	6 cut(s)	8, 193, 407, 598, 914, 995
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	4 cut(s)	41, 54, 117, 197
DpnI	GATC	2 cut(s)	13, 75
DpnII	GATC	2 cut(s)	11, 73
Eco130I	CCWWGG	3 cut(s)	7, 221, 314
Eco147I	AGGCCT	2 cut(s)	46, 571
Eco32I	GATATC	1 cut(s)	349
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	2 cut(s)	265, 571
EcoRV	GATATC	1 cut(s)	349
EcoT14I	CCWWGG	3 cut(s)	7, 221, 314
ErhI	CCWWGG	3 cut(s)	7, 221, 314
FaeI	CATG	6 cut(s)	11, 196, 410, 601, 917, 998
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	6 cut(s)	7, 192, 406, 597, 913, 994
FblI	GTMKAC	1 cut(s)	775
Fnu4HI	GCNGC	1 cut(s)	903
Fsp4HI	GCNGC	1 cut(s)	903
FspBI	CTAG	3 cut(s)	315, 516, 873
GluI	GCNGC	1 cut(s)	903
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	46, 571
HapII	CCGG	1 cut(s)	1060
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	6 cut(s)	11, 196, 410, 601, 917, 998
HinfI	GANTC	5 cut(s)	217, 536, 649, 788, 947
HpaII	CCGG	1 cut(s)	1060
HphI	GGTGA	1 cut(s)	858
Hpy166II	GTNNAC	2 cut(s)	261, 776
Hpy188I	TCNGA	4 cut(s)	118, 544, 800, 943
Hpy188III	TCNNGA	4 cut(s)	591, 653, 914, 1042
Hpy8I	GTNNAC	2 cut(s)	261, 776
HpyAV	CCTTC	1 cut(s)	455
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	6 cut(s)	178, 327, 626, 808, 831, 961
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 902
HpyF3I	CTNAG	4 cut(s)	41, 54, 117, 197
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	6 cut(s)	11, 196, 410, 601, 917, 998
KpnI	GGTACC	1 cut(s)	686
Kzo9I	GATC	2 cut(s)	11, 73
LmnI	GCTCC	2 cut(s)	290, 697
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	1 cut(s)	791
MaeI	CTAG	3 cut(s)	315, 516, 873
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	13, 75
MboI	GATC	2 cut(s)	11, 73
MboII	GAAGA	2 cut(s)	531, 1022
MfeI	CAATTG	1 cut(s)	891
MflI	RGATCY	2 cut(s)	11, 73
MluCI	AATT	5 cut(s)	161, 385, 453, 711, 891
MlyI	GAGTC	2 cut(s)	797, 941
MmeI	TCCRAC	2 cut(s)	138, 276
MnlI	CCTC	5 cut(s)	416, 526, 561, 588, 763
MroXI	GAANNNNTTC	1 cut(s)	205
MseI	TTAA	4 cut(s)	18, 246, 480, 812
MspI	CCGG	1 cut(s)	1060
MspR9I	CCNGG	3 cut(s)	267, 573, 1060
MunI	CAATTG	1 cut(s)	891
MvaI	CCWGG	2 cut(s)	267, 573
MwoI	GCNNNNNNNGC	2 cut(s)	706, 902
NciI	CCSGG	1 cut(s)	1060
NcoI	CCATGG	1 cut(s)	7
NdeII	GATC	2 cut(s)	11, 73
NlaIII	CATG	6 cut(s)	11, 196, 410, 601, 917, 998
NlaIV	GGNNCC	3 cut(s)	65, 684, 836
NmuCI	GTSAC	1 cut(s)	101
NspI	RCATGY	2 cut(s)	601, 998
PagI	TCATGA	1 cut(s)	913
PaqCI	CACCTGC	2 cut(s)	648, 877
PceI	AGGCCT	2 cut(s)	46, 571
PciI	ACATGT	1 cut(s)	597
PdmI	GAANNNNTTC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	217, 536, 649
PflMI	CCANNNNNTGG	1 cut(s)	227
PfoI	TCCNGGA	2 cut(s)	265, 1058
PkrI	GCNGC	1 cut(s)	904
PleI	GAGTC	2 cut(s)	796, 941
PpsI	GAGTC	2 cut(s)	796, 941
PscI	ACATGT	1 cut(s)	597
PshBI	ATTAAT	1 cut(s)	480
PsiI	TTATAA	2 cut(s)	741, 980
Psp6I	CCWGG	2 cut(s)	265, 571
PspGI	CCWGG	2 cut(s)	265, 571
PspN4I	GGNNCC	3 cut(s)	65, 684, 836
PspPI	GGNCC	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	11, 73
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
SaqAI	TTAA	4 cut(s)	18, 246, 480, 812
SatI	GCNGC	1 cut(s)	903
Sau3AI	GATC	2 cut(s)	11, 73
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	2 cut(s)	797, 941
ScrFI	CCNGG	3 cut(s)	267, 573, 1060
SfaNI	GCATC	1 cut(s)	791
SinI	GGWCC	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	108, 579
SmoI	CTYRAG	2 cut(s)	108, 579
Sse9I	AATT	5 cut(s)	161, 385, 453, 711, 891
SseBI	AGGCCT	2 cut(s)	46, 571
SsiI	CCGC	4 cut(s)	473, 883, 896, 992
SspI	AATATT	1 cut(s)	146
SspMI	CTAG	3 cut(s)	315, 516, 873
StuI	AGGCCT	2 cut(s)	46, 571
StyD4I	CCNGG	3 cut(s)	265, 571, 1058
StyI	CCWWGG	3 cut(s)	7, 221, 314
TaiI	ACGT	1 cut(s)	158
TasI	AATT	5 cut(s)	161, 385, 453, 711, 891
TfiI	GAWTC	3 cut(s)	217, 536, 649
Tru1I	TTAA	4 cut(s)	18, 246, 480, 812
Tru9I	TTAA	4 cut(s)	18, 246, 480, 812
TscAI	CASTG	4 cut(s)	65, 334, 445, 699
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	7 cut(s)	181, 198, 437, 602, 687, 834, 930
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	4 cut(s)	65, 334, 445, 699
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	1 cut(s)	575
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	2 cut(s)	601, 998
XmaJI	CCTAGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	775
XmnI	GAANNNNTTC	1 cut(s)	205
XspI	CTAG	3 cut(s)	315, 516, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.