polyadenylate-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G36660 |
| fragaria_vesca | FvH4_6g17300 FvH4_6g17300 |
| malus_domestica | MD12G1102400.v1.1 MD14G1096300.v1.1 |
| prunus_persica | Prupe.7G122400_v2.0.a1 Prupe.7G122400_v2.0.a1 |
| pyrus_communis | pycom12g10040 |
| rosa_chinensis | RchiOBHm_Chr3g0471421 |
| rosa_laevigata | RLG00000024179 |
| rosa_multiflora | Rmu_sc0006582.1_g000012 Rmu_sc0006582.1_g000013 |
| rosa_roxburghii | Rroxscaffold_6G00409960 |
| rosa_rugosa | Rorug03G0117700 |
| rosa_samantha | Rh2BG190900 Rh2CG185900 Rh3AG167500 Rh3BG193000 Rh3CG183400 Rh3DG182500 |
| rosa_wichuraiana | Rw3G015780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 1176, 1855 |
| AccII | CGCG | 1 cut(s) | 1539 |
| AciI | CCGC | 4 cut(s) | 20, 191, 1498, 1904 |
| AclWI | GGATC | 4 cut(s) | 269, 769, 889, 1561 |
| AcoI | YGGCCR | 3 cut(s) | 3, 151, 552 |
| AcsI | RAATTY | 5 cut(s) | 368, 524, 577, 592, 872 |
| AcuI | CTGAAG | 1 cut(s) | 928 |
| AfaI | GTAC | 5 cut(s) | 47, 68, 89, 126, 1254 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 645, 1039, 1040, 1265, 1331 |
| AgeI | ACCGGT | 1 cut(s) | 1354 |
| AgsI | TTSAA | 6 cut(s) | 109, 353, 877, 1148, 1185, 1485 |
| AjiI | CACGTC | 1 cut(s) | 120 |
| AjnI | CCWGG | 2 cut(s) | 1198, 1297 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 617, 649, 1809, 1841 |
| Alw21I | GWGCWC | 1 cut(s) | 1836 |
| Alw26I | GTCTC | 4 cut(s) | 48, 495, 1567, 1602 |
| AlwI | GGATC | 4 cut(s) | 269, 769, 889, 1561 |
| AoxI | GGCC | 4 cut(s) | 3, 151, 552, 1295 |
| ApoI | RAATTY | 5 cut(s) | 368, 524, 577, 592, 872 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 817, 849 |
| AsiGI | ACCGGT | 1 cut(s) | 1354 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 201, 1824 |
| AspS9I | GGNCC | 3 cut(s) | 1178, 1334, 1604 |
| AsuC2I | CCSGG | 1 cut(s) | 1266 |
| AsuHPI | GGTGA | 5 cut(s) | 64, 229, 259, 880, 1782 |
| AvaII | GGWCC | 3 cut(s) | 1178, 1334, 1604 |
| AxyI | CCTNAGG | 2 cut(s) | 1035, 1419 |
| BaeGI | GKGCMC | 1 cut(s) | 802 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 591, 624, 1259, 1292 |
| BalI | TGGCCA | 1 cut(s) | 554 |
| BanII | GRGCYC | 1 cut(s) | 776 |
| Bbv12I | GWGCWC | 1 cut(s) | 1836 |
| BbvCI | CCTCAGC | 1 cut(s) | 1896 |
| BccI | CCATC | 5 cut(s) | 71, 122, 404, 1296, 1750 |
| BceAI | ACGGC | 3 cut(s) | 166, 184, 1330 |
| BciT130I | CCWGG | 2 cut(s) | 1200, 1299 |
| BciVI | GTATCC | 2 cut(s) | 592, 1199 |
| BcnI | CCSGG | 1 cut(s) | 1266 |
| BcoDI | GTCTC | 4 cut(s) | 48, 495, 1567, 1602 |
| BfaI | CTAG | 2 cut(s) | 693, 1881 |
| BfmI | CTRYAG | 2 cut(s) | 133, 1139 |
| BfuI | GTATCC | 2 cut(s) | 592, 1199 |
| BglII | AGATCT | 1 cut(s) | 1839 |
| Bme1390I | CCNGG | 3 cut(s) | 1200, 1266, 1299 |
| Bme18I | GGWCC | 3 cut(s) | 1178, 1334, 1604 |
| BmgBI | CACGTC | 1 cut(s) | 120 |
| BmgT120I | GGNCC | 3 cut(s) | 1178, 1334, 1604 |
| BmiI | GGNNCC | 2 cut(s) | 490, 775 |
| BmrFI | CCNGG | 3 cut(s) | 1200, 1266, 1299 |
| BmrI | ACTGGG | 1 cut(s) | 779 |
| BmsI | GCATC | 7 cut(s) | 271, 277, 721, 1602, 1681, 1734, 1858 |
| BmuI | ACTGGG | 1 cut(s) | 779 |
| BpmI | CTGGAG | 1 cut(s) | 1772 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1644, 1896 |
| BpuEI | CTTGAG | 3 cut(s) | 343, 1584, 1820 |
| BpuMI | CCSGG | 1 cut(s) | 1266 |
| Bsa29I | ATCGAT | 1 cut(s) | 332 |
| BsaI | GGTCTC | 2 cut(s) | 48, 1602 |
| BsaJI | CCNNGG | 2 cut(s) | 777, 1198 |
| BsaWI | WCCGGW | 1 cut(s) | 1354 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 617, 647, 1809, 1839 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 645, 1039, 1040, 1265, 1331 |
| Bse118I | RCCGGY | 1 cut(s) | 1354 |
| Bse1I | ACTGG | 1 cut(s) | 774 |
| Bse21I | CCTNAGG | 2 cut(s) | 1035, 1419 |
| Bse3DI | GCAATG | 3 cut(s) | 750, 759, 1569 |
| BseBI | CCWGG | 2 cut(s) | 1200, 1299 |
| BseCI | ATCGAT | 1 cut(s) | 332 |
| BseDI | CCNNGG | 2 cut(s) | 777, 1198 |
| BseGI | GGATG | 5 cut(s) | 682, 1194, 1307, 1749, 1876 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 645, 1039, 1040, 1265, 1331 |
| BseMI | GCAATG | 3 cut(s) | 750, 759, 1569 |
| BseNI | ACTGG | 1 cut(s) | 774 |
| BseRI | GAGGAG | 3 cut(s) | 860, 1052, 1248 |
| BseSI | GKGCMC | 1 cut(s) | 802 |
| Bsh1236I | CGCG | 1 cut(s) | 1539 |
| BshFI | GGCC | 4 cut(s) | 5, 153, 554, 1297 |
| BshTI | ACCGGT | 1 cut(s) | 1354 |
| BshVI | ATCGAT | 1 cut(s) | 332 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1836 |
| BsiSI | CCGG | 2 cut(s) | 1265, 1355 |
| BsiWI | CGTACG | 1 cut(s) | 124 |
| BslFI | GGGAC | 2 cut(s) | 152, 1281 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 645, 1039, 1040, 1265, 1331 |
| BsmAI | GTCTC | 4 cut(s) | 48, 495, 1567, 1602 |
| BsmFI | GGGAC | 2 cut(s) | 152, 1281 |
| BsnI | GGCC | 4 cut(s) | 5, 153, 554, 1297 |
| Bso31I | GGTCTC | 2 cut(s) | 48, 1602 |
| Bsp1286I | GDGCHC | 3 cut(s) | 776, 802, 1836 |
| Bsp143I | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| BspACI | CCGC | 4 cut(s) | 20, 191, 1498, 1904 |
| BspANI | GGCC | 4 cut(s) | 5, 153, 554, 1297 |
| BspDI | ATCGAT | 1 cut(s) | 332 |
| BspFNI | CGCG | 1 cut(s) | 1539 |
| BspLI | GGNNCC | 2 cut(s) | 490, 775 |
| BspMAI | CTGCAG | 1 cut(s) | 1143 |
| BspPI | GGATC | 4 cut(s) | 269, 769, 889, 1561 |
| BspQI | GCTCTTC | 1 cut(s) | 921 |
| BspTNI | GGTCTC | 2 cut(s) | 48, 1602 |
| BsrDI | GCAATG | 3 cut(s) | 750, 759, 1569 |
| BsrFI | RCCGGY | 1 cut(s) | 1354 |
| BsrI | ACTGG | 1 cut(s) | 774 |
| BssAI | RCCGGY | 1 cut(s) | 1354 |
| BssECI | CCNNGG | 2 cut(s) | 777, 1198 |
| BssMI | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| BssT1I | CCWWGG | 1 cut(s) | 777 |
| Bst2UI | CCWGG | 2 cut(s) | 1200, 1299 |
| Bst4CI | ACNGT | 2 cut(s) | 496, 1452 |
| Bst6I | CTCTTC | 3 cut(s) | 410, 609, 921 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 467, 829, 1172 |
| BstC8I | GCNNGC | 4 cut(s) | 1509, 1625, 1629, 1670 |
| BstF5I | GGATG | 5 cut(s) | 682, 1194, 1307, 1749, 1876 |
| BstFNI | CGCG | 1 cut(s) | 1539 |
| BstKTI | GATC | 6 cut(s) | 277, 544, 764, 884, 1556, 1842 |
| BstMAI | GTCTC | 4 cut(s) | 48, 495, 1567, 1602 |
| BstMBI | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 206, 467, 740, 749, 829, 1172, 1504, 1901 |
| BstNI | CCWGG | 2 cut(s) | 1200, 1299 |
| BstNSI | RCATGY | 1 cut(s) | 1627 |
| BstSCI | CCNGG | 3 cut(s) | 1198, 1264, 1297 |
| BstSFI | CTRYAG | 2 cut(s) | 133, 1139 |
| BstSLI | GKGCMC | 1 cut(s) | 802 |
| BstUI | CGCG | 1 cut(s) | 1539 |
| BstX2I | RGATCY | 1 cut(s) | 1839 |
| BstYI | RGATCY | 1 cut(s) | 1839 |
| Bsu15I | ATCGAT | 1 cut(s) | 332 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1035, 1419 |
| BsuI | GTATCC | 2 cut(s) | 592, 1199 |
| BsuRI | GGCC | 4 cut(s) | 5, 153, 554, 1297 |
| BsuTUI | ATCGAT | 1 cut(s) | 332 |
| BtrI | CACGTC | 1 cut(s) | 120 |
| BtsCI | GGATG | 5 cut(s) | 682, 1194, 1307, 1749, 1876 |
| BtsIMutI | CAGTG | 3 cut(s) | 492, 918, 956 |
| Cac8I | GCNNGC | 4 cut(s) | 1509, 1625, 1629, 1670 |
| Cfr10I | RCCGGY | 1 cut(s) | 1354 |
| Cfr13I | GGNCC | 3 cut(s) | 1178, 1334, 1604 |
| ClaI | ATCGAT | 1 cut(s) | 332 |
| CseI | GACGC | 2 cut(s) | 27, 821 |
| Csp6I | GTAC | 5 cut(s) | 46, 67, 88, 125, 1253 |
| CspAI | ACCGGT | 1 cut(s) | 1354 |
| CviAII | CATG | 5 cut(s) | 239, 259, 1067, 1543, 1624 |
| CviQI | GTAC | 5 cut(s) | 46, 67, 88, 125, 1253 |
| DpnI | GATC | 6 cut(s) | 276, 543, 763, 883, 1555, 1841 |
| DpnII | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1176, 1855 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1176, 1855 |
| EaeI | YGGCCR | 3 cut(s) | 3, 151, 552 |
| Eam1104I | CTCTTC | 3 cut(s) | 410, 609, 921 |
| EarI | CTCTTC | 3 cut(s) | 410, 609, 921 |
| Eco130I | CCWWGG | 1 cut(s) | 777 |
| Eco24I | GRGCYC | 1 cut(s) | 776 |
| Eco31I | GGTCTC | 2 cut(s) | 48, 1602 |
| Eco47I | GGWCC | 3 cut(s) | 1178, 1334, 1604 |
| Eco57I | CTGAAG | 1 cut(s) | 928 |
| Eco81I | CCTNAGG | 2 cut(s) | 1035, 1419 |
| EcoRII | CCWGG | 2 cut(s) | 1198, 1297 |
| EcoT14I | CCWWGG | 1 cut(s) | 777 |
| EcoT38I | GRGCYC | 1 cut(s) | 776 |
| ErhI | CCWWGG | 1 cut(s) | 777 |
| FaeI | CATG | 5 cut(s) | 242, 262, 1070, 1546, 1627 |
| FaqI | GGGAC | 2 cut(s) | 152, 1281 |
| FatI | CATG | 5 cut(s) | 238, 258, 1066, 1542, 1623 |
| FauI | CCCGC | 1 cut(s) | 198 |
| FauNDI | CATATG | 1 cut(s) | 1410 |
| FokI | GGATG | 5 cut(s) | 689, 1181, 1314, 1756, 1863 |
| FriOI | GRGCYC | 1 cut(s) | 776 |
| FspBI | CTAG | 2 cut(s) | 693, 1881 |
| GsuI | CTGGAG | 1 cut(s) | 1772 |
| HaeIII | GGCC | 4 cut(s) | 5, 153, 554, 1297 |
| HapII | CCGG | 2 cut(s) | 1265, 1355 |
| HgaI | GACGC | 2 cut(s) | 27, 821 |
| Hin1II | CATG | 5 cut(s) | 242, 262, 1070, 1546, 1627 |
| HincII | GTYRAC | 1 cut(s) | 1909 |
| HindII | GTYRAC | 1 cut(s) | 1909 |
| HinfI | GANTC | 7 cut(s) | 140, 446, 455, 1481, 1560, 1787, 1796 |
| HpaII | CCGG | 2 cut(s) | 1265, 1355 |
| HphI | GGTGA | 5 cut(s) | 64, 229, 259, 880, 1782 |
| Hpy166II | GTNNAC | 3 cut(s) | 712, 1455, 1909 |
| Hpy188I | TCNGA | 7 cut(s) | 53, 232, 451, 640, 1086, 1113, 1768 |
| Hpy8I | GTNNAC | 3 cut(s) | 712, 1455, 1909 |
| Hpy99I | CGWCG | 5 cut(s) | 43, 53, 152, 741, 837 |
| HpyAV | CCTTC | 2 cut(s) | 802, 1191 |
| HpyCH4III | ACNGT | 2 cut(s) | 496, 1452 |
| HpyCH4IV | ACGT | 4 cut(s) | 48, 119, 401, 1328 |
| HpyCH4V | TGCA | 9 cut(s) | 238, 390, 461, 971, 1141, 1154, 1322, 1430, 1714 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 206, 467, 740, 749, 829, 1172, 1504, 1901 |
| HpySE526I | ACGT | 4 cut(s) | 48, 119, 401, 1328 |
| Hsp92II | CATG | 5 cut(s) | 242, 262, 1070, 1546, 1627 |
| Kzo9I | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| LguI | GCTCTTC | 1 cut(s) | 921 |
| LmnI | GCTCC | 4 cut(s) | 494, 779, 859, 1234 |
| LweI | GCATC | 7 cut(s) | 271, 277, 721, 1602, 1681, 1734, 1858 |
| MaeI | CTAG | 2 cut(s) | 693, 1881 |
| MaeII | ACGT | 4 cut(s) | 48, 119, 401, 1328 |
| MaeIII | GTNAC | 3 cut(s) | 916, 1464, 1788 |
| MalI | GATC | 6 cut(s) | 276, 543, 763, 883, 1555, 1841 |
| MboI | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| MboII | GAAGA | 9 cut(s) | 232, 300, 427, 601, 626, 817, 910, 938, 1407 |
| MfeI | CAATTG | 1 cut(s) | 462 |
| MflI | RGATCY | 1 cut(s) | 1839 |
| MhlI | GDGCHC | 3 cut(s) | 776, 802, 1836 |
| MlsI | TGGCCA | 1 cut(s) | 554 |
| MluNI | TGGCCA | 1 cut(s) | 554 |
| MlyI | GAGTC | 5 cut(s) | 134, 455, 1569, 1796, 1805 |
| MmeI | TCCRAC | 2 cut(s) | 31, 1567 |
| Mox20I | TGGCCA | 1 cut(s) | 554 |
| MroXI | GAANNNNTTC | 2 cut(s) | 201, 1824 |
| MscI | TGGCCA | 1 cut(s) | 554 |
| MseI | TTAA | 3 cut(s) | 9, 60, 363 |
| Msp20I | TGGCCA | 1 cut(s) | 554 |
| MspA1I | CMGCKG | 4 cut(s) | 85, 1138, 1462, 1498 |
| MspI | CCGG | 2 cut(s) | 1265, 1355 |
| MspR9I | CCNGG | 3 cut(s) | 1200, 1266, 1299 |
| MunI | CAATTG | 1 cut(s) | 462 |
| MvaI | CCWGG | 2 cut(s) | 1200, 1299 |
| MvnI | CGCG | 1 cut(s) | 1539 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 206, 467, 740, 749, 829, 1172, 1504, 1901 |
| NciI | CCSGG | 1 cut(s) | 1266 |
| NdeI | CATATG | 1 cut(s) | 1410 |
| NdeII | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| NlaIII | CATG | 5 cut(s) | 242, 262, 1070, 1546, 1627 |
| NlaIV | GGNNCC | 2 cut(s) | 490, 775 |
| NmuCI | GTSAC | 3 cut(s) | 916, 1464, 1788 |
| NspI | RCATGY | 1 cut(s) | 1627 |
| PaeI | GCATGC | 1 cut(s) | 1627 |
| PciSI | GCTCTTC | 1 cut(s) | 921 |
| PdmI | GAANNNNTTC | 2 cut(s) | 201, 1824 |
| PfeI | GAWTC | 2 cut(s) | 455, 1481 |
| Pfl23II | CGTACG | 1 cut(s) | 124 |
| PflFI | GACNNNGTC | 1 cut(s) | 37 |
| PfoI | TCCNGGA | 1 cut(s) | 1264 |
| PinAI | ACCGGT | 1 cut(s) | 1354 |
| PleI | GAGTC | 5 cut(s) | 134, 454, 1568, 1795, 1804 |
| PpsI | GAGTC | 5 cut(s) | 134, 454, 1568, 1795, 1804 |
| Psp6I | CCWGG | 2 cut(s) | 1198, 1297 |
| PspGI | CCWGG | 2 cut(s) | 1198, 1297 |
| PspLI | CGTACG | 1 cut(s) | 124 |
| PspN4I | GGNNCC | 2 cut(s) | 490, 775 |
| PspPI | GGNCC | 3 cut(s) | 1178, 1334, 1604 |
| PstI | CTGCAG | 1 cut(s) | 1143 |
| PsuI | RGATCY | 1 cut(s) | 1839 |
| PsyI | GACNNNGTC | 1 cut(s) | 37 |
| PvuII | CAGCTG | 3 cut(s) | 85, 1138, 1462 |
| RsaI | GTAC | 5 cut(s) | 47, 68, 89, 126, 1254 |
| RsaNI | GTAC | 5 cut(s) | 46, 67, 88, 125, 1253 |
| SapI | GCTCTTC | 1 cut(s) | 921 |
| SaqAI | TTAA | 3 cut(s) | 9, 60, 363 |
| Sau3AI | GATC | 6 cut(s) | 274, 541, 761, 881, 1553, 1839 |
| Sau96I | GGNCC | 3 cut(s) | 1178, 1334, 1604 |
| SchI | GAGTC | 5 cut(s) | 134, 455, 1569, 1796, 1805 |
| ScrFI | CCNGG | 3 cut(s) | 1200, 1266, 1299 |
| SduI | GDGCHC | 3 cut(s) | 776, 802, 1836 |
| SfaNI | GCATC | 7 cut(s) | 271, 277, 721, 1602, 1681, 1734, 1858 |
| SfcI | CTRYAG | 2 cut(s) | 133, 1139 |
| SinI | GGWCC | 3 cut(s) | 1178, 1334, 1604 |
| SmlI | CTYRAG | 3 cut(s) | 322, 1599, 1835 |
| SmoI | CTYRAG | 3 cut(s) | 322, 1599, 1835 |
| SphI | GCATGC | 1 cut(s) | 1627 |
| SsiI | CCGC | 4 cut(s) | 20, 191, 1498, 1904 |
| SspMI | CTAG | 2 cut(s) | 693, 1881 |
| StyD4I | CCNGG | 3 cut(s) | 1198, 1264, 1297 |
| StyI | CCWWGG | 1 cut(s) | 777 |
| TaaI | ACNGT | 2 cut(s) | 496, 1452 |
| TaiI | ACGT | 4 cut(s) | 51, 122, 404, 1331 |
| TaqI | TCGA | 4 cut(s) | 205, 332, 544, 736 |
| TfiI | GAWTC | 2 cut(s) | 455, 1481 |
| Tru1I | TTAA | 3 cut(s) | 9, 60, 363 |
| Tru9I | TTAA | 3 cut(s) | 9, 60, 363 |
| TscAI | CASTG | 3 cut(s) | 499, 925, 956 |
| TseFI | GTSAC | 3 cut(s) | 916, 1464, 1788 |
| Tsp45I | GTSAC | 3 cut(s) | 916, 1464, 1788 |
| TspDTI | ATGAA | 9 cut(s) | 172, 581, 770, 939, 1055, 1070, 1415, 1559, 1865 |
| TspGWI | ACGGA | 3 cut(s) | 54, 112, 1419 |
| TspRI | CASTG | 3 cut(s) | 499, 925, 956 |
| Tth111I | GACNNNGTC | 1 cut(s) | 37 |
| VpaK11BI | GGWCC | 3 cut(s) | 1178, 1334, 1604 |
| XapI | RAATTY | 5 cut(s) | 368, 524, 577, 592, 872 |
| XbaI | TCTAGA | 1 cut(s) | 692 |
| XceI | RCATGY | 1 cut(s) | 1627 |
| XmnI | GAANNNNTTC | 2 cut(s) | 201, 1824 |
| XspI | CTAG | 2 cut(s) | 693, 1881 |