Prupe.7G122400_v2.0.a1

polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
14527185 .. 14531656
4472 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G122400.2

Sequence Viewer

Length: 1914 bp
ATGGCCGTTAATCCTCTGGCGGTGGGTGTGCCGACTGCGTCGCTGTACGTCGGAGACCTTAATCCGTACATCACCGATGGTCAGCTGTACGATACTTTCAGTCAGTTCAAGTCCATCACGTCCGTACGGGTCTGTAGGGACTCCACCGACGGCCATTCTCTCTGCTACGGCTACATCAACTTCATCAACCCGCAAGAAGCAATTCGAGCTATTGAGGTGAAGAATAACTCTGAGGTGCATGGAAAGGTGATAAGGGTCATGTGGTCGCATCGTGATCCTGATGCGAGAAGAAGTGGAATTGGGAATGTGTTTGTCAAGAACTTGAGCCAATCGATTGATAATGTAGGGCTTCAAGATATGTTTAAGAAATTTGGAAATATATTGTCTTGCAAAGTCGCCACGTTTGATGATGGGAAGAGTAAAGGCTATGGCTTTGTTCAGTTTGAGTCTGAGGAATCTGCAATTGCTGCTATTGAGAAGCTAAATGGCTCCACTGTGGGAGACAAACCTTTGTATGTTGCCAAATTTATTAGAAAGAGTGATCGAGTTTTGGCCAATCCTGATATGAAATATACAAATTTGTATGTGAAGAATTTGGATACAAATGTCAGGGAAGAGATTGTGGAGGAAAAGTTCTCCGAGTTTGGGAAAATTGTTAGCTTCACTATTACAAAGGATGACAATGGGAACTCTAGAGGTTTTGGGTTTGTGAACTTTGAGAACCCAGATGATGCTCGACGAGCAATGGAGGCAATGAATGGATCACAACTGGGCTCCAAGGTTCTGTATGTAGCAAGGGCACAGAAGAAGGCAGAGCGTGAGCAAATGTTGCGTCGGCAATTTGAGGAGAAACGAAAGGAGCAAATGGTGAAATTCAAGGGATCAAATGTGTATGTGAAGAACATTGATGATGATGTCACTGATGAAGAGCTGGTAGAACACTTCAGTCAGTGTGGCACAATTACTTCTGCAAAGATTATGCGAGATGAGAAAGGAATAAGCAAAGGGTTTGGTTTTGTTTGCTTCTCTACCCCTGAGGAGGGCAATAAGGCTGTGAATACTTTTCATGGATATATGTTTCATCGGAAGCCATTGTATGTGGCTATTGCTCAGAGGAAAGAGGAAAGACAAGCACAGCTGCAGCTTCAATATGCACAGCGTATGGCAGGACTTGCTGGTCCTTCAACAGCAGTCATCCCTGGTGGATACCCTCCTATCTATTATCAAGCTCCCTCTGGTGTTGTTCCACAAGTACCTCCTCGTCCGGGACTGATGTATCAGCCTTTGGGATTGAGGCCAGGATGGAGAGCCAACGGCTTTGCACCTACGTCTGGACCACCCTATCAACCACCACCGGTTTCTGTTATGCCAAGACAACATAGGCAAAACAGGGGAAGAATGAACGGACATATGCTTCCTCAGGGAAGTGCATATATGCCACATTTACAACAGTCCACTCAGCTGTCACACTCAGCAAAAGATTCAAACAATCAGCAGCGGACGGGGCAGGCTAAGTATGTTCCTAATGGTCGCCAACGCGACATGAATAAAGGATCAGGAGTCTCAACCATTGCTTCCAATTCTGTTGGAGGTGGGTCTCAAGGACCAGAGATGCTGAGTAGCATGCTTGCTGCTGCTTCTCCTGAGCAGCAGAAACAGATACTTGGCGAGCATCTCTACCCACTCGTCCATAAACATAAGCATTTTCACTTGCAGCCCGACCTTGCCTCAAAAATTACAGGGATGCTGCTGGAGATGGACAACTCAGAACTGCTGCTTTTATTGGAGTCACCAGAGTCTTTGGCTGCCAAAGTGGGAGAAGCTGTTCAGGTGCTCAAGATCTCCAAGACTAAAGTGTCTAACAAAGATGCCATTCATCCTAGTTTTCTCTCTGCTGAGGTTGCGGTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

638

Amino Acids

70.61

Weight (kDa)

9.14

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1176, 1855
AccII CGCG 1 cut(s) 1539
AciI CCGC 4 cut(s) 20, 191, 1498, 1904
AclWI GGATC 4 cut(s) 269, 769, 889, 1561
AcoI YGGCCR 3 cut(s) 3, 151, 552
AcsI RAATTY 5 cut(s) 368, 524, 577, 592, 872
AcuI CTGAAG 1 cut(s) 928
AfaI GTAC 5 cut(s) 47, 68, 89, 126, 1254
AfiI CCNNNNNNNGG 5 cut(s) 645, 1039, 1040, 1265, 1331
AgeI ACCGGT 1 cut(s) 1354
AgsI TTSAA 6 cut(s) 109, 353, 877, 1148, 1185, 1485
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 2 cut(s) 1198, 1297
AloI GAACNNNNNNTCC 4 cut(s) 617, 649, 1809, 1841
Alw21I GWGCWC 1 cut(s) 1836
Alw26I GTCTC 4 cut(s) 48, 495, 1567, 1602
AlwI GGATC 4 cut(s) 269, 769, 889, 1561
AoxI GGCC 4 cut(s) 3, 151, 552, 1295
ApoI RAATTY 5 cut(s) 368, 524, 577, 592, 872
ArsI GACNNNNNNTTYG 2 cut(s) 817, 849
AsiGI ACCGGT 1 cut(s) 1354
Asp700I GAANNNNTTC 2 cut(s) 201, 1824
AspS9I GGNCC 3 cut(s) 1178, 1334, 1604
AsuC2I CCSGG 1 cut(s) 1266
AsuHPI GGTGA 5 cut(s) 64, 229, 259, 880, 1782
AvaII GGWCC 3 cut(s) 1178, 1334, 1604
AxyI CCTNAGG 2 cut(s) 1035, 1419
BaeGI GKGCMC 1 cut(s) 802
BaeI ACNNNNGTAYC 4 cut(s) 591, 624, 1259, 1292
BalI TGGCCA 1 cut(s) 554
BanII GRGCYC 1 cut(s) 776
Bbv12I GWGCWC 1 cut(s) 1836
BbvCI CCTCAGC 1 cut(s) 1896
BccI CCATC 5 cut(s) 71, 122, 404, 1296, 1750
BceAI ACGGC 3 cut(s) 166, 184, 1330
BciT130I CCWGG 2 cut(s) 1200, 1299
BciVI GTATCC 2 cut(s) 592, 1199
BcnI CCSGG 1 cut(s) 1266
BcoDI GTCTC 4 cut(s) 48, 495, 1567, 1602
BfaI CTAG 2 cut(s) 693, 1881
BfmI CTRYAG 2 cut(s) 133, 1139
BfuI GTATCC 2 cut(s) 592, 1199
BglII AGATCT 1 cut(s) 1839
Bme1390I CCNGG 3 cut(s) 1200, 1266, 1299
Bme18I GGWCC 3 cut(s) 1178, 1334, 1604
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 1178, 1334, 1604
BmiI GGNNCC 2 cut(s) 490, 775
BmrFI CCNGG 3 cut(s) 1200, 1266, 1299
BmrI ACTGGG 1 cut(s) 779
BmsI GCATC 7 cut(s) 271, 277, 721, 1602, 1681, 1734, 1858
BmuI ACTGGG 1 cut(s) 779
BpmI CTGGAG 1 cut(s) 1772
Bpu10I CCTNAGC 2 cut(s) 1644, 1896
BpuEI CTTGAG 3 cut(s) 343, 1584, 1820
BpuMI CCSGG 1 cut(s) 1266
Bsa29I ATCGAT 1 cut(s) 332
BsaI GGTCTC 2 cut(s) 48, 1602
BsaJI CCNNGG 2 cut(s) 777, 1198
BsaWI WCCGGW 1 cut(s) 1354
BsaXI ACNNNNNCTCC 4 cut(s) 617, 647, 1809, 1839
Bsc4I CCNNNNNNNGG 5 cut(s) 645, 1039, 1040, 1265, 1331
Bse118I RCCGGY 1 cut(s) 1354
Bse1I ACTGG 1 cut(s) 774
Bse21I CCTNAGG 2 cut(s) 1035, 1419
Bse3DI GCAATG 3 cut(s) 750, 759, 1569
BseBI CCWGG 2 cut(s) 1200, 1299
BseCI ATCGAT 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 777, 1198
BseGI GGATG 5 cut(s) 682, 1194, 1307, 1749, 1876
BseLI CCNNNNNNNGG 5 cut(s) 645, 1039, 1040, 1265, 1331
BseMI GCAATG 3 cut(s) 750, 759, 1569
BseNI ACTGG 1 cut(s) 774
BseRI GAGGAG 3 cut(s) 860, 1052, 1248
BseSI GKGCMC 1 cut(s) 802
Bsh1236I CGCG 1 cut(s) 1539
BshFI GGCC 4 cut(s) 5, 153, 554, 1297
BshTI ACCGGT 1 cut(s) 1354
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 1836
BsiSI CCGG 2 cut(s) 1265, 1355
BsiWI CGTACG 1 cut(s) 124
BslFI GGGAC 2 cut(s) 152, 1281
BslI CCNNNNNNNGG 5 cut(s) 645, 1039, 1040, 1265, 1331
BsmAI GTCTC 4 cut(s) 48, 495, 1567, 1602
BsmFI GGGAC 2 cut(s) 152, 1281
BsnI GGCC 4 cut(s) 5, 153, 554, 1297
Bso31I GGTCTC 2 cut(s) 48, 1602
Bsp1286I GDGCHC 3 cut(s) 776, 802, 1836
Bsp143I GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
BspACI CCGC 4 cut(s) 20, 191, 1498, 1904
BspANI GGCC 4 cut(s) 5, 153, 554, 1297
BspDI ATCGAT 1 cut(s) 332
BspFNI CGCG 1 cut(s) 1539
BspLI GGNNCC 2 cut(s) 490, 775
BspMAI CTGCAG 1 cut(s) 1143
BspPI GGATC 4 cut(s) 269, 769, 889, 1561
BspQI GCTCTTC 1 cut(s) 921
BspTNI GGTCTC 2 cut(s) 48, 1602
BsrDI GCAATG 3 cut(s) 750, 759, 1569
BsrFI RCCGGY 1 cut(s) 1354
BsrI ACTGG 1 cut(s) 774
BssAI RCCGGY 1 cut(s) 1354
BssECI CCNNGG 2 cut(s) 777, 1198
BssMI GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 2 cut(s) 1200, 1299
Bst4CI ACNGT 2 cut(s) 496, 1452
Bst6I CTCTTC 3 cut(s) 410, 609, 921
BstAPI GCANNNNNTGC 3 cut(s) 467, 829, 1172
BstC8I GCNNGC 4 cut(s) 1509, 1625, 1629, 1670
BstF5I GGATG 5 cut(s) 682, 1194, 1307, 1749, 1876
BstFNI CGCG 1 cut(s) 1539
BstKTI GATC 6 cut(s) 277, 544, 764, 884, 1556, 1842
BstMAI GTCTC 4 cut(s) 48, 495, 1567, 1602
BstMBI GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
BstMWI GCNNNNNNNGC 8 cut(s) 206, 467, 740, 749, 829, 1172, 1504, 1901
BstNI CCWGG 2 cut(s) 1200, 1299
BstNSI RCATGY 1 cut(s) 1627
BstSCI CCNGG 3 cut(s) 1198, 1264, 1297
BstSFI CTRYAG 2 cut(s) 133, 1139
BstSLI GKGCMC 1 cut(s) 802
BstUI CGCG 1 cut(s) 1539
BstX2I RGATCY 1 cut(s) 1839
BstYI RGATCY 1 cut(s) 1839
Bsu15I ATCGAT 1 cut(s) 332
Bsu36I CCTNAGG 2 cut(s) 1035, 1419
BsuI GTATCC 2 cut(s) 592, 1199
BsuRI GGCC 4 cut(s) 5, 153, 554, 1297
BsuTUI ATCGAT 1 cut(s) 332
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 5 cut(s) 682, 1194, 1307, 1749, 1876
BtsIMutI CAGTG 3 cut(s) 492, 918, 956
Cac8I GCNNGC 4 cut(s) 1509, 1625, 1629, 1670
Cfr10I RCCGGY 1 cut(s) 1354
Cfr13I GGNCC 3 cut(s) 1178, 1334, 1604
ClaI ATCGAT 1 cut(s) 332
CseI GACGC 2 cut(s) 27, 821
Csp6I GTAC 5 cut(s) 46, 67, 88, 125, 1253
CspAI ACCGGT 1 cut(s) 1354
CviAII CATG 5 cut(s) 239, 259, 1067, 1543, 1624
CviQI GTAC 5 cut(s) 46, 67, 88, 125, 1253
DpnI GATC 6 cut(s) 276, 543, 763, 883, 1555, 1841
DpnII GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
DrdI GACNNNNNNGTC 2 cut(s) 1176, 1855
DseDI GACNNNNNNGTC 2 cut(s) 1176, 1855
EaeI YGGCCR 3 cut(s) 3, 151, 552
Eam1104I CTCTTC 3 cut(s) 410, 609, 921
EarI CTCTTC 3 cut(s) 410, 609, 921
Eco130I CCWWGG 1 cut(s) 777
Eco24I GRGCYC 1 cut(s) 776
Eco31I GGTCTC 2 cut(s) 48, 1602
Eco47I GGWCC 3 cut(s) 1178, 1334, 1604
Eco57I CTGAAG 1 cut(s) 928
Eco81I CCTNAGG 2 cut(s) 1035, 1419
EcoRII CCWGG 2 cut(s) 1198, 1297
EcoT14I CCWWGG 1 cut(s) 777
EcoT38I GRGCYC 1 cut(s) 776
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 5 cut(s) 242, 262, 1070, 1546, 1627
FaqI GGGAC 2 cut(s) 152, 1281
FatI CATG 5 cut(s) 238, 258, 1066, 1542, 1623
FauI CCCGC 1 cut(s) 198
FauNDI CATATG 1 cut(s) 1410
FokI GGATG 5 cut(s) 689, 1181, 1314, 1756, 1863
FriOI GRGCYC 1 cut(s) 776
FspBI CTAG 2 cut(s) 693, 1881
GsuI CTGGAG 1 cut(s) 1772
HaeIII GGCC 4 cut(s) 5, 153, 554, 1297
HapII CCGG 2 cut(s) 1265, 1355
HgaI GACGC 2 cut(s) 27, 821
Hin1II CATG 5 cut(s) 242, 262, 1070, 1546, 1627
HincII GTYRAC 1 cut(s) 1909
HindII GTYRAC 1 cut(s) 1909
HinfI GANTC 7 cut(s) 140, 446, 455, 1481, 1560, 1787, 1796
HpaII CCGG 2 cut(s) 1265, 1355
HphI GGTGA 5 cut(s) 64, 229, 259, 880, 1782
Hpy166II GTNNAC 3 cut(s) 712, 1455, 1909
Hpy188I TCNGA 7 cut(s) 53, 232, 451, 640, 1086, 1113, 1768
Hpy8I GTNNAC 3 cut(s) 712, 1455, 1909
Hpy99I CGWCG 5 cut(s) 43, 53, 152, 741, 837
HpyAV CCTTC 2 cut(s) 802, 1191
HpyCH4III ACNGT 2 cut(s) 496, 1452
HpyCH4IV ACGT 4 cut(s) 48, 119, 401, 1328
HpyCH4V TGCA 9 cut(s) 238, 390, 461, 971, 1141, 1154, 1322, 1430, 1714
HpyF10VI GCNNNNNNNGC 8 cut(s) 206, 467, 740, 749, 829, 1172, 1504, 1901
HpySE526I ACGT 4 cut(s) 48, 119, 401, 1328
Hsp92II CATG 5 cut(s) 242, 262, 1070, 1546, 1627
Kzo9I GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
LguI GCTCTTC 1 cut(s) 921
LmnI GCTCC 4 cut(s) 494, 779, 859, 1234
LweI GCATC 7 cut(s) 271, 277, 721, 1602, 1681, 1734, 1858
MaeI CTAG 2 cut(s) 693, 1881
MaeII ACGT 4 cut(s) 48, 119, 401, 1328
MaeIII GTNAC 3 cut(s) 916, 1464, 1788
MalI GATC 6 cut(s) 276, 543, 763, 883, 1555, 1841
MboI GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
MboII GAAGA 9 cut(s) 232, 300, 427, 601, 626, 817, 910, 938, 1407
MfeI CAATTG 1 cut(s) 462
MflI RGATCY 1 cut(s) 1839
MhlI GDGCHC 3 cut(s) 776, 802, 1836
MlsI TGGCCA 1 cut(s) 554
MluNI TGGCCA 1 cut(s) 554
MlyI GAGTC 5 cut(s) 134, 455, 1569, 1796, 1805
MmeI TCCRAC 2 cut(s) 31, 1567
Mox20I TGGCCA 1 cut(s) 554
MroXI GAANNNNTTC 2 cut(s) 201, 1824
MscI TGGCCA 1 cut(s) 554
MseI TTAA 3 cut(s) 9, 60, 363
Msp20I TGGCCA 1 cut(s) 554
MspA1I CMGCKG 4 cut(s) 85, 1138, 1462, 1498
MspI CCGG 2 cut(s) 1265, 1355
MspR9I CCNGG 3 cut(s) 1200, 1266, 1299
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 2 cut(s) 1200, 1299
MvnI CGCG 1 cut(s) 1539
MwoI GCNNNNNNNGC 8 cut(s) 206, 467, 740, 749, 829, 1172, 1504, 1901
NciI CCSGG 1 cut(s) 1266
NdeI CATATG 1 cut(s) 1410
NdeII GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
NlaIII CATG 5 cut(s) 242, 262, 1070, 1546, 1627
NlaIV GGNNCC 2 cut(s) 490, 775
NmuCI GTSAC 3 cut(s) 916, 1464, 1788
NspI RCATGY 1 cut(s) 1627
PaeI GCATGC 1 cut(s) 1627
PciSI GCTCTTC 1 cut(s) 921
PdmI GAANNNNTTC 2 cut(s) 201, 1824
PfeI GAWTC 2 cut(s) 455, 1481
Pfl23II CGTACG 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 1264
PinAI ACCGGT 1 cut(s) 1354
PleI GAGTC 5 cut(s) 134, 454, 1568, 1795, 1804
PpsI GAGTC 5 cut(s) 134, 454, 1568, 1795, 1804
Psp6I CCWGG 2 cut(s) 1198, 1297
PspGI CCWGG 2 cut(s) 1198, 1297
PspLI CGTACG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 490, 775
PspPI GGNCC 3 cut(s) 1178, 1334, 1604
PstI CTGCAG 1 cut(s) 1143
PsuI RGATCY 1 cut(s) 1839
PsyI GACNNNGTC 1 cut(s) 37
PvuII CAGCTG 3 cut(s) 85, 1138, 1462
RsaI GTAC 5 cut(s) 47, 68, 89, 126, 1254
RsaNI GTAC 5 cut(s) 46, 67, 88, 125, 1253
SapI GCTCTTC 1 cut(s) 921
SaqAI TTAA 3 cut(s) 9, 60, 363
Sau3AI GATC 6 cut(s) 274, 541, 761, 881, 1553, 1839
Sau96I GGNCC 3 cut(s) 1178, 1334, 1604
SchI GAGTC 5 cut(s) 134, 455, 1569, 1796, 1805
ScrFI CCNGG 3 cut(s) 1200, 1266, 1299
SduI GDGCHC 3 cut(s) 776, 802, 1836
SfaNI GCATC 7 cut(s) 271, 277, 721, 1602, 1681, 1734, 1858
SfcI CTRYAG 2 cut(s) 133, 1139
SinI GGWCC 3 cut(s) 1178, 1334, 1604
SmlI CTYRAG 3 cut(s) 322, 1599, 1835
SmoI CTYRAG 3 cut(s) 322, 1599, 1835
SphI GCATGC 1 cut(s) 1627
SsiI CCGC 4 cut(s) 20, 191, 1498, 1904
SspMI CTAG 2 cut(s) 693, 1881
StyD4I CCNGG 3 cut(s) 1198, 1264, 1297
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 2 cut(s) 496, 1452
TaiI ACGT 4 cut(s) 51, 122, 404, 1331
TaqI TCGA 4 cut(s) 205, 332, 544, 736
TfiI GAWTC 2 cut(s) 455, 1481
Tru1I TTAA 3 cut(s) 9, 60, 363
Tru9I TTAA 3 cut(s) 9, 60, 363
TscAI CASTG 3 cut(s) 499, 925, 956
TseFI GTSAC 3 cut(s) 916, 1464, 1788
Tsp45I GTSAC 3 cut(s) 916, 1464, 1788
TspDTI ATGAA 9 cut(s) 172, 581, 770, 939, 1055, 1070, 1415, 1559, 1865
TspGWI ACGGA 3 cut(s) 54, 112, 1419
TspRI CASTG 3 cut(s) 499, 925, 956
Tth111I GACNNNGTC 1 cut(s) 37
VpaK11BI GGWCC 3 cut(s) 1178, 1334, 1604
XapI RAATTY 5 cut(s) 368, 524, 577, 592, 872
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 1 cut(s) 1627
XmnI GAANNNNTTC 2 cut(s) 201, 1824
XspI CTAG 2 cut(s) 693, 1881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.