Rh3AG167500

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010442
Physical Location & Seq
Forward (+)
15502058 .. 15506435
4378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG167500.1

Sequence Viewer

Length: 1410 bp
ATGGCTGTACCGCAGACTCCGGCGACGGCGCTCGCCGTGATGGCGTCTCTGTACGTCGGAGACCTCAGCCCCTACATCACCGAGACCGAACTCTACGAGGCGTTCGAAAACGAGAAAAAGACCCTTGCGTCCGTTAGGGTGTGCAGGGACACCAACACCGGCCGGTCTCTCTGCTACGGCTACGCCAACTTTTCAAACACCGACGACGCAATTCGAGCCATTGAACTGAAGAATAACTCTTTTCTGCATGGAAGAGTGATAAGGGTCATGTGGTCTCATCGTGATCCTGATGCCAGGAGAAGTGGAATTGGGAATGTGTTTGTCAAGAACTTGAGCGAAGGGATTGATAATGTAGGGCTCCACGATATGTTTAGGAAATTTGGAAATGTTTTGTCTTGCAAAGTTGCCATGTTTGAGGATGGGAAGAGTAAAGGCTATGGCTTTGTTCAGTTTGAGTCTGAGGAATCAGCAATTGCTGCTATTGACAAGCTAAATGGCTCTACAGTCGGAGACAAACAATTGTATGTCGCAAAGTTTGTTAGAAAGAGTGATCGAGTTTTGCCCAATCCTGATGTGAAATATACAAATTTGTATGTGAAGAATTTGGATCTAAATGTCAGGGAAGAGCTTCTGGAAGAAAAGTTCTCTGAGTTCGGGAAAATTATAAGCTTTGCAATAGCAAGGGATGAAAATGGAATTTCTAGAGGTTTTGGCTTTGTGAACTTTGAGAGCCCGGATGATGCTAGAAAAGCATTGGAATCTCTGAATGGAACTCAACTTGGTTCCAAGGTTCTGTATGTAGCGAGAGCACAGAAGAAGGCAGAGCGTGAACACATTTTGCGTTGTCAGTTTGAGGAAAAACGGAAGGAGCAAATGTTAAAATTCAAGGGATCAAACGTGTATGTGAAGAACATTGATGATGATGTCACTGATGAAGAGCTCATAGACCACTTCAGTCAATGTGGCACGATTACTTCTGCAAAAATTATGAGAGATGAGAAAGGAATAAGCAAGGGCTTTGGTTTTGTTTGTTTCTCTACCCCCGAGGAGGGCAATAAAGCTGTGATTACATTTCATGGATATATGTTTCATCGGAAGCCATTGTATGTCGCTATTGCTCAAAGGAAAGAAGAAAGACAAGCACAGCTGCAACTTCAGTATGCACAGCGTATGGCAGGATTTGCTGGTCCTTCAACAGCTGTCATCCCTGGTGGATACCCTCCTATCTACTATCAGGCTCCATCTGGTGTTGTTCCACCAGTGCCTCCTCGACCAGGGATGATGTATCAGCCTTTGGGATTGAGGCCAGGATGGAGACCTAATGGCTTTGCACCTACCTCTGGACCAGGTTATCAACCACCACCTGTTCCTGTTGTGAGTACACTCTCCCTCAACTCAACAATCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP RRM_1

Protein Analysis

469

Amino Acids

52.27

Weight (kDa)

8.65

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 17 - 88 1.5e-13 RNA recognition motif
RRM_1 PF00076 106 - 174 2.7e-20 RNA recognition motif
RRM_1 PF00076 197 - 265 5.5e-22 RNA recognition motif
RRM_1 PF00076 300 - 368 5.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
AasI GACNNNNNNGTC 1 cut(s) 127
AciI CCGC 1 cut(s) 11
AclWI GGATC 3 cut(s) 278, 615, 898
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 5 cut(s) 377, 586, 601, 696, 881
AcuI CTGAAG 3 cut(s) 248, 937, 1139
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 3 cut(s) 9, 53, 1381
AfiI CCNNNNNNNGG 4 cut(s) 1048, 1049, 1274, 1340
AflIII ACRYGT 1 cut(s) 897
AgsI TTSAA 4 cut(s) 195, 224, 886, 1194
AjnI CCWGG 5 cut(s) 293, 1207, 1273, 1306, 1345
AloI GAACNNNNNNTCC 2 cut(s) 626, 658
AluBI AGCT 7 cut(s) 490, 628, 669, 940, 1061, 1147, 1199
AluI AGCT 7 cut(s) 490, 628, 669, 940, 1061, 1147, 1199
Alw21I GWGCWC 2 cut(s) 811, 942
Alw26I GTCTC 7 cut(s) 51, 54, 77, 171, 279, 504, 1309
AlwI GGATC 3 cut(s) 278, 615, 898
Ama87I CYCGRG 1 cut(s) 1043
AoxI GGCC 2 cut(s) 160, 1304
ApeKI GCWGC 2 cut(s) 476, 1147
ApoI RAATTY 5 cut(s) 377, 586, 601, 696, 881
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 2 cut(s) 1187, 1343
AsuC2I CCSGG 1 cut(s) 734
AsuHPI GGTGA 1 cut(s) 70
AsuII TTCGAA 1 cut(s) 105
AvaI CYCGRG 1 cut(s) 1043
AvaII GGWCC 2 cut(s) 1187, 1343
BanII GRGCYC 3 cut(s) 360, 734, 942
Bbv12I GWGCWC 2 cut(s) 811, 942
BbvCI CCTCAGC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 463, 1134
BccI CCATC 4 cut(s) 34, 413, 1249, 1305
BceAI ACGGC 3 cut(s) 20, 42, 193
BciT130I CCWGG 5 cut(s) 295, 1209, 1275, 1308, 1347
BciVI GTATCC 1 cut(s) 1208
BcnI CCSGG 1 cut(s) 734
BcoDI GTCTC 7 cut(s) 51, 54, 77, 171, 279, 504, 1309
BfaI CTAG 2 cut(s) 702, 744
BfmI CTRYAG 1 cut(s) 501
BfoI RGCGCY 1 cut(s) 32
BfuI GTATCC 1 cut(s) 1208
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 2 cut(s) 477, 1148
BlsI GCNGC 2 cut(s) 478, 1149
Bme1390I CCNGG 6 cut(s) 295, 734, 1209, 1275, 1308, 1347
Bme18I GGWCC 2 cut(s) 1187, 1343
BmeT110I CYCGRG 1 cut(s) 1043
BmgT120I GGNCC 2 cut(s) 1187, 1343
BmiI GGNNCC 3 cut(s) 359, 784, 1239
BmrFI CCNGG 6 cut(s) 295, 734, 1209, 1275, 1308, 1347
BmsI GCATC 2 cut(s) 280, 730
Bpu10I CCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 352
BpuMI CCSGG 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 5 cut(s) 54, 77, 171, 279, 1309
BsaJI CCNNGG 4 cut(s) 786, 1044, 1207, 1274
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 4 cut(s) 1048, 1049, 1274, 1340
Bse118I RCCGGY 2 cut(s) 158, 162
Bse1I ACTGG 1 cut(s) 1259
BseBI CCWGG 5 cut(s) 295, 1209, 1275, 1308, 1347
BseDI CCNNGG 4 cut(s) 786, 1044, 1207, 1274
BseGI GGATG 6 cut(s) 424, 691, 742, 1203, 1284, 1316
BseLI CCNNNNNNNGG 4 cut(s) 1048, 1049, 1274, 1340
BseMII CTCAG 3 cut(s) 79, 450, 639
BseNI ACTGG 1 cut(s) 1259
BseRI GAGGAG 2 cut(s) 1061, 1257
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 2 cut(s) 463, 1134
BsgI GTGCAG 1 cut(s) 163
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 162, 1306
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 2 cut(s) 811, 942
BsiHKCI CYCGRG 1 cut(s) 1043
BsiSI CCGG 4 cut(s) 20, 159, 163, 734
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 1048, 1049, 1274, 1340
BsmAI GTCTC 7 cut(s) 51, 54, 77, 171, 279, 504, 1309
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 2 cut(s) 162, 1306
Bso31I GGTCTC 5 cut(s) 54, 77, 171, 279, 1309
BsoBI CYCGRG 1 cut(s) 1043
Bsp119I TTCGAA 1 cut(s) 105
Bsp1286I GDGCHC 4 cut(s) 360, 734, 811, 942
Bsp143I GATC 4 cut(s) 283, 550, 607, 890
BspACI CCGC 1 cut(s) 11
BspANI GGCC 2 cut(s) 162, 1306
BspCNI CTCAG 3 cut(s) 78, 451, 640
BspLI GGNNCC 3 cut(s) 359, 784, 1239
BspPI GGATC 3 cut(s) 278, 615, 898
BspQI GCTCTTC 2 cut(s) 618, 930
BspT104I TTCGAA 1 cut(s) 105
BspTNI GGTCTC 5 cut(s) 54, 77, 171, 279, 1309
BsrFI RCCGGY 2 cut(s) 158, 162
BsrI ACTGG 1 cut(s) 1259
BssAI RCCGGY 2 cut(s) 158, 162
BssECI CCNNGG 4 cut(s) 786, 1044, 1207, 1274
BssMI GATC 4 cut(s) 283, 550, 607, 890
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 786
Bst2UI CCWGG 5 cut(s) 295, 1209, 1275, 1308, 1347
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 4 cut(s) 247, 419, 618, 930
BstACI GRCGYC 1 cut(s) 44
BstAPI GCANNNNNTGC 2 cut(s) 476, 1181
BstBI TTCGAA 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 3 cut(s) 65, 459, 648
BstENI CCTNNNNNAGG 1 cut(s) 1272
BstF5I GGATG 6 cut(s) 424, 691, 742, 1203, 1284, 1316
BstH2I RGCGCY 1 cut(s) 32
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 4 cut(s) 286, 553, 610, 893
BstMAI GTCTC 7 cut(s) 51, 54, 77, 171, 279, 504, 1309
BstMBI GATC 4 cut(s) 283, 550, 607, 890
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 5 cut(s) 41, 215, 476, 749, 1181
BstNI CCWGG 5 cut(s) 295, 1209, 1275, 1308, 1347
BstSCI CCNGG 6 cut(s) 293, 732, 1207, 1273, 1306, 1345
BstSFI CTRYAG 1 cut(s) 501
BstV1I GCAGC 2 cut(s) 463, 1134
BstX2I RGATCY 1 cut(s) 607
BstYI RGATCY 1 cut(s) 607
BstZI CGGCCG 1 cut(s) 160
BsuI GTATCC 1 cut(s) 1208
BsuRI GGCC 2 cut(s) 162, 1306
BtsCI GGATG 6 cut(s) 424, 691, 742, 1203, 1284, 1316
BtsIMutI CAGTG 2 cut(s) 927, 1266
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 31
Cfr10I RCCGGY 2 cut(s) 158, 162
Cfr13I GGNCC 2 cut(s) 1187, 1343
CseI GACGC 3 cut(s) 33, 117, 215
CsiI ACCWGGT 1 cut(s) 1345
Csp6I GTAC 3 cut(s) 8, 52, 1380
CviAII CATG 4 cut(s) 248, 268, 409, 1076
CviQI GTAC 3 cut(s) 8, 52, 1380
DdeI CTNAG 3 cut(s) 65, 459, 648
DpnI GATC 4 cut(s) 285, 552, 609, 892
DpnII GATC 4 cut(s) 283, 550, 607, 890
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 160
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 4 cut(s) 247, 419, 618, 930
EarI CTCTTC 4 cut(s) 247, 419, 618, 930
Ecl136II GAGCTC 1 cut(s) 940
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 786
Eco24I GRGCYC 3 cut(s) 360, 734, 942
Eco31I GGTCTC 5 cut(s) 54, 77, 171, 279, 1309
Eco47I GGWCC 2 cut(s) 1187, 1343
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 940
Eco57I CTGAAG 3 cut(s) 248, 937, 1139
Eco88I CYCGRG 1 cut(s) 1043
EcoICRI GAGCTC 1 cut(s) 940
EcoNI CCTNNNNNAGG 1 cut(s) 1272
EcoRII CCWGG 5 cut(s) 293, 1207, 1273, 1306, 1345
EcoT14I CCWWGG 1 cut(s) 786
EcoT38I GRGCYC 3 cut(s) 360, 734, 942
ErhI CCWWGG 1 cut(s) 786
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 4 cut(s) 251, 271, 412, 1079
FaqI GGGAC 1 cut(s) 161
FatI CATG 4 cut(s) 247, 267, 408, 1075
Fnu4HI GCNGC 2 cut(s) 477, 1148
FokI GGATG 6 cut(s) 431, 698, 749, 1190, 1291, 1323
FriOI GRGCYC 3 cut(s) 360, 734, 942
Fsp4HI GCNGC 2 cut(s) 477, 1148
FspBI CTAG 2 cut(s) 702, 744
GlaI GCGC 1 cut(s) 30
GluI GCNGC 2 cut(s) 477, 1148
HaeII RGCGCY 1 cut(s) 32
HaeIII GGCC 2 cut(s) 162, 1306
HapII CCGG 4 cut(s) 20, 159, 163, 734
HgaI GACGC 3 cut(s) 33, 117, 215
HhaI GCGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 4 cut(s) 251, 271, 412, 1079
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 667
HinfI GANTC 4 cut(s) 16, 455, 464, 758
HpaII CCGG 4 cut(s) 20, 159, 163, 734
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 3 cut(s) 721, 830, 1382
Hpy188I TCNGA 6 cut(s) 59, 460, 509, 649, 765, 1095
Hpy188III TCNNGA 8 cut(s) 281, 287, 325, 569, 632, 655, 702, 1341
Hpy8I GTNNAC 3 cut(s) 721, 830, 1382
Hpy99I CGWCG 4 cut(s) 28, 59, 206, 209
HpyAV CCTTC 4 cut(s) 332, 811, 859, 1200
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 2 cut(s) 54, 897
HpyCH4V TGCA 8 cut(s) 144, 247, 399, 674, 980, 1150, 1163, 1331
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 215, 476, 749, 1181
HpyF3I CTNAG 3 cut(s) 65, 459, 648
HpySE526I ACGT 2 cut(s) 54, 897
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 4 cut(s) 251, 271, 412, 1079
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 283, 550, 607, 890
LguI GCTCTTC 2 cut(s) 618, 930
LmnI GCTCC 3 cut(s) 363, 868, 1243
Lsp1109I GCAGC 2 cut(s) 463, 1134
LweI GCATC 2 cut(s) 280, 730
MabI ACCWGGT 1 cut(s) 1345
MaeI CTAG 2 cut(s) 702, 744
MaeII ACGT 2 cut(s) 54, 897
MaeIII GTNAC 1 cut(s) 925
MalI GATC 4 cut(s) 285, 552, 609, 892
MboI GATC 4 cut(s) 283, 550, 607, 890
MfeI CAATTG 2 cut(s) 471, 518
MflI RGATCY 1 cut(s) 607
MhlI GDGCHC 4 cut(s) 360, 734, 811, 942
MlyI GAGTC 2 cut(s) 10, 464
MmeI TCCRAC 2 cut(s) 37, 487
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 2 cut(s) 878, 1408
MspA1I CMGCKG 2 cut(s) 1147, 1199
MspI CCGG 4 cut(s) 20, 159, 163, 734
MspR9I CCNGG 6 cut(s) 295, 734, 1209, 1275, 1308, 1347
MunI CAATTG 2 cut(s) 471, 518
MvaI CCWGG 5 cut(s) 295, 1209, 1275, 1308, 1347
MwoI GCNNNNNNNGC 5 cut(s) 41, 215, 476, 749, 1181
NciI CCSGG 1 cut(s) 734
NdeII GATC 4 cut(s) 283, 550, 607, 890
NlaIII CATG 4 cut(s) 251, 271, 412, 1079
NlaIV GGNNCC 3 cut(s) 359, 784, 1239
NmuCI GTSAC 1 cut(s) 925
NspV TTCGAA 1 cut(s) 105
PciSI GCTCTTC 2 cut(s) 618, 930
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 464, 758
PkrI GCNGC 2 cut(s) 478, 1149
PleI GAGTC 2 cut(s) 10, 463
PpsI GAGTC 2 cut(s) 10, 463
PsiI TTATAA 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 942
Psp6I CCWGG 5 cut(s) 293, 1207, 1273, 1306, 1345
PspGI CCWGG 5 cut(s) 293, 1207, 1273, 1306, 1345
PspN4I GGNNCC 3 cut(s) 359, 784, 1239
PspPI GGNCC 2 cut(s) 1187, 1343
PsuI RGATCY 1 cut(s) 607
PvuII CAGCTG 2 cut(s) 1147, 1199
RsaI GTAC 3 cut(s) 9, 53, 1381
RsaNI GTAC 3 cut(s) 8, 52, 1380
SacI GAGCTC 1 cut(s) 942
SapI GCTCTTC 2 cut(s) 618, 930
SaqAI TTAA 2 cut(s) 878, 1408
SatI GCNGC 2 cut(s) 477, 1148
Sau3AI GATC 4 cut(s) 283, 550, 607, 890
Sau96I GGNCC 2 cut(s) 1187, 1343
SchI GAGTC 2 cut(s) 10, 464
ScrFI CCNGG 6 cut(s) 295, 734, 1209, 1275, 1308, 1347
SduI GDGCHC 4 cut(s) 360, 734, 811, 942
SexAI ACCWGGT 1 cut(s) 1345
SfaNI GCATC 2 cut(s) 280, 730
SfcI CTRYAG 1 cut(s) 501
SfuI TTCGAA 1 cut(s) 105
SinI GGWCC 2 cut(s) 1187, 1343
SmlI CTYRAG 1 cut(s) 331
SmoI CTYRAG 1 cut(s) 331
SsiI CCGC 1 cut(s) 11
SspMI CTAG 2 cut(s) 702, 744
SstI GAGCTC 1 cut(s) 942
StyD4I CCNGG 6 cut(s) 293, 732, 1207, 1273, 1306, 1345
StyI CCWWGG 1 cut(s) 786
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 2 cut(s) 57, 900
TaqI TCGA 4 cut(s) 105, 214, 553, 1270
TaqII GACCGA 1 cut(s) 101
TatI WGTACW 1 cut(s) 1379
TfiI GAWTC 2 cut(s) 464, 758
Tru1I TTAA 2 cut(s) 878, 1408
Tru9I TTAA 2 cut(s) 878, 1408
TscAI CASTG 2 cut(s) 934, 1266
TseFI GTSAC 1 cut(s) 925
TseI GCWGC 2 cut(s) 476, 1147
Tsp45I GTSAC 1 cut(s) 925
TspDTI ATGAA 4 cut(s) 702, 948, 1064, 1079
TspGWI ACGGA 2 cut(s) 121, 877
TspRI CASTG 2 cut(s) 934, 1266
VpaK11BI GGWCC 2 cut(s) 1187, 1343
XagI CCTNNNNNAGG 1 cut(s) 1272
XapI RAATTY 5 cut(s) 377, 586, 601, 696, 881
XbaI TCTAGA 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 2 cut(s) 702, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.