pycom12g10040

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0010442
Physical Location & Seq
Reverse (-)
11943312 .. 11945879
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g10040.4

Sequence Viewer

Length: 1227 bp
ATGGCTGCTAATAATTCCCAGACGGTGGTGGGGGCTGGGCCTACGGCGGGGGGTGTTCCTGCGGCGTCGCTGTACGTCGGAGACCTCCATCCGTACATGACCGAAGTTCAGCTGGAGGAGGCTTTCAAAGGCTTCAAAGGTGTCACGTCCGTTCGGCTCTGCAGGGACACCGCCACCGCCACCAACTGTTCTCTCTGCTACGGCTACGTCAACTTCACCACACCTGAAGAAGCAATTCGAGCTCTTGAAGTGATGAACCATTCAATTCTTAATGGAAGAGTGATAAGGGTCATGTGGTCTCATCGTGATCCCGATGCAAGAAGAAGTGGAATTGGGAACGTGTTTGTCAAGAACTTGAGCGAATCAATTAATAGTGTAGAGCTTGAAGAAATGTTTAAGAAGTTCGGACGTACTTTGTCTTGCAAAGTGGCCATGTTTGATGACGGGAAGAGTAAAGGCTATGGCTTTGTTCAGTTTGAGTCTGAGGAATCTGCGATTGCCGCTATTGAGGCGCTGAATGGCACCACTGTCAAAAACAAGCAGTATGTTGCGAAATTTGTTAGAAAGAGCGATCGCGTTTTGCCCAATCCTGATATTAAATATACAAATTTGTATATGAAGAATTTGGATCCAACTCTCAAGGAAAAGCTTGTGGAGGAGAAGTTCTCTGAGTTTGGGAAAATTGTTAGCTTTGCGATTGCAAAGGACGACCATGGGAACTCTAGAGGTTTTGGTTTTGTGAACTTCGAGAACCCAGATGATGCTAGACGAGCAATGGAAGGAATGAATGGATCACAACTTGGCTCCAAGGTTCTATATGTTGCAAGGGCTCAGAAAAAGGCAGAGCGCGAGCATCTTTTGCGTTGGCAGTTTGAGGAAAAACGAAAAGAGCAAATGTTAAAATTCAAGGGATCAAATGTGTATGTGAAGAACATTGACGACGATGTCAGTGAAGAAGAGCTGGCAGAACACTTTAGTCAGTGTGGTACAATTACTTCTGCAAAAATTATGCGAGACGACAAAGGAATAAGCAAGGGGTTTGGTTTTATCTGCTTCTCTACCCCTGAGGAGGGCAATAAAGCTGTGAATACTTTTCATGGTAATAAATGTTTCATCGGAAGCCATTGTATGTGGCTATTGCCCAACGGAAAGAGGAGAGACAAGCGCAGCTGCAGCTTCAGCATGCACAGCGTATGGCAGGATTTGCAGGTCCTTCACCAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP RRM_1

Protein Analysis

409

Amino Acids

45.8

Weight (kDa)

8.57

Isoelectric Point (pI)

33.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 944
Acc36I ACCTGC 1 cut(s) 1198
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 25
AccII CGCG 2 cut(s) 576, 849
AciI CCGC 5 cut(s) 47, 62, 171, 177, 501
AclWI GGATC 5 cut(s) 302, 623, 636, 799, 919
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 4 cut(s) 554, 607, 622, 902
AcuI CTGAAG 2 cut(s) 246, 1162
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 4 cut(s) 74, 95, 412, 988
AfiI CCNNNNNNNGG 4 cut(s) 25, 47, 1069, 1070
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 6 cut(s) 127, 136, 248, 264, 386, 907
AjiI CACGTC 1 cut(s) 147
AloI GAACNNNNNNTCC 2 cut(s) 647, 679
AluBI AGCT 9 cut(s) 112, 242, 382, 649, 690, 961, 1082, 1170, 1176
AluI AGCT 9 cut(s) 112, 242, 382, 649, 690, 961, 1082, 1170, 1176
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 4 cut(s) 75, 303, 1008, 1152
AlwI GGATC 5 cut(s) 302, 623, 636, 799, 919
AoxI GGCC 2 cut(s) 38, 429
ApeKI GCWGC 4 cut(s) 5, 1167, 1170, 1173
ApoI RAATTY 4 cut(s) 554, 607, 622, 902
AseI ATTAAT 1 cut(s) 369
AsiSI GCGATCGC 1 cut(s) 574
Asp700I GAANNNNTTC 1 cut(s) 234
AspLEI GCGC 3 cut(s) 514, 849, 1167
AspS9I GGNCC 2 cut(s) 38, 1210
AsuHPI GGTGA 2 cut(s) 208, 1208
AvaII GGWCC 1 cut(s) 1210
AxyI CCTNAGG 1 cut(s) 1065
BalI TGGCCA 1 cut(s) 431
BamHI GGATCC 1 cut(s) 628
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 2 cut(s) 244, 832
BarI GAAGNNNNNNTAC 2 cut(s) 979, 1011
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 3 cut(s) 1157, 1179, 1185
BccI CCATC 1 cut(s) 96
BceAI ACGGC 2 cut(s) 60, 217
BcoDI GTCTC 4 cut(s) 75, 303, 1008, 1152
BfaI CTAG 2 cut(s) 723, 765
BfmI CTRYAG 2 cut(s) 160, 1171
BfoI RGCGCY 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 1198
BisI GCNGC 6 cut(s) 6, 63, 501, 1168, 1171, 1174
BlsI GCNGC 6 cut(s) 7, 64, 502, 1169, 1172, 1175
Bme18I GGWCC 1 cut(s) 1210
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 38, 1210
BmiI GGNNCC 3 cut(s) 523, 630, 805
BmsI GCATC 3 cut(s) 304, 751, 862
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BpmI CTGGAG 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 376, 623
BsaHI GRCGYC 1 cut(s) 65
BsaI GGTCTC 2 cut(s) 75, 303
BsaJI CCNNGG 2 cut(s) 712, 807
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 47, 1069, 1070
Bse21I CCTNAGG 1 cut(s) 1065
Bse3DI GCAATG 1 cut(s) 780
BseDI CCNNGG 2 cut(s) 712, 807
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 4 cut(s) 25, 47, 1069, 1070
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 4 cut(s) 474, 660, 845, 1056
BseRI GAGGAG 4 cut(s) 131, 671, 1082, 1168
BseXI GCAGC 3 cut(s) 1157, 1179, 1185
BseYI CCCAGC 1 cut(s) 35
Bsh1236I CGCG 2 cut(s) 576, 849
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 40, 431
BshNI GGYRCC 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 574
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 4 cut(s) 25, 47, 1069, 1070
BsmAI GTCTC 4 cut(s) 75, 303, 1008, 1152
BsmBI CGTCTC 1 cut(s) 1008
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 2 cut(s) 40, 431
Bso31I GGTCTC 2 cut(s) 75, 303
Bsp1286I GDGCHC 2 cut(s) 244, 832
Bsp143I GATC 5 cut(s) 307, 571, 628, 791, 911
Bsp19I CCATGG 1 cut(s) 712
BspACI CCGC 5 cut(s) 47, 62, 171, 177, 501
BspANI GGCC 2 cut(s) 40, 431
BspCNI CTCAG 4 cut(s) 475, 661, 844, 1057
BspFNI CGCG 2 cut(s) 576, 849
BspLI GGNNCC 3 cut(s) 523, 630, 805
BspMAI CTGCAG 2 cut(s) 164, 1175
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 5 cut(s) 302, 623, 636, 799, 919
BspQI GCTCTTC 1 cut(s) 951
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 2 cut(s) 75, 303
BsrDI GCAATG 1 cut(s) 780
BssECI CCNNGG 2 cut(s) 712, 807
BssMI GATC 5 cut(s) 307, 571, 628, 791, 911
BssNI GRCGYC 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 712, 807
Bst4CI ACNGT 4 cut(s) 25, 188, 529, 1224
Bst6I CTCTTC 3 cut(s) 271, 443, 951
BstACI GRCGYC 1 cut(s) 65
BstAPI GCANNNNNTGC 2 cut(s) 859, 1204
BstC8I GCNNGC 3 cut(s) 851, 963, 1184
BstDEI CTNAG 4 cut(s) 483, 669, 831, 1065
BstDSI CCRYGG 1 cut(s) 712
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 2 cut(s) 576, 849
BstH2I RGCGCY 1 cut(s) 515
BstHHI GCGC 3 cut(s) 514, 849, 1167
BstKTI GATC 5 cut(s) 310, 574, 631, 794, 914
BstMAI GTCTC 4 cut(s) 75, 303, 1008, 1152
BstMBI GATC 5 cut(s) 307, 571, 628, 791, 911
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 9 cut(s) 239, 500, 509, 770, 859, 1173, 1179, 1188, 1204
BstNSI RCATGY 1 cut(s) 1186
BstSFI CTRYAG 2 cut(s) 160, 1171
BstUI CGCG 2 cut(s) 576, 849
BstV1I GCAGC 3 cut(s) 1157, 1179, 1185
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu36I CCTNAGG 1 cut(s) 1065
BsuRI GGCC 2 cut(s) 40, 431
BtgI CCRYGG 1 cut(s) 712
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 3 cut(s) 525, 955, 986
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 3 cut(s) 851, 963, 1184
CfoI GCGC 3 cut(s) 514, 849, 1167
Cfr13I GGNCC 2 cut(s) 38, 1210
CseI GACGC 1 cut(s) 54
Csp6I GTAC 4 cut(s) 73, 94, 411, 987
CviAII CATG 6 cut(s) 97, 292, 433, 713, 1097, 1183
CviQI GTAC 4 cut(s) 73, 94, 411, 987
DdeI CTNAG 4 cut(s) 483, 669, 831, 1065
DpnI GATC 5 cut(s) 309, 573, 630, 793, 913
DpnII GATC 5 cut(s) 307, 571, 628, 791, 911
DrdI GACNNNNNNGTC 1 cut(s) 944
DseDI GACNNNNNNGTC 1 cut(s) 944
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 3 cut(s) 271, 443, 951
EarI CTCTTC 3 cut(s) 271, 443, 951
Ecl136II GAGCTC 1 cut(s) 242
Eco130I CCWWGG 2 cut(s) 712, 807
Eco24I GRGCYC 2 cut(s) 244, 832
Eco31I GGTCTC 2 cut(s) 75, 303
Eco47I GGWCC 1 cut(s) 1210
Eco53kI GAGCTC 1 cut(s) 242
Eco57I CTGAAG 2 cut(s) 246, 1162
Eco81I CCTNAGG 1 cut(s) 1065
EcoICRI GAGCTC 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 1210
EcoT14I CCWWGG 2 cut(s) 712, 807
EcoT38I GRGCYC 2 cut(s) 244, 832
ErhI CCWWGG 2 cut(s) 712, 807
Esp3I CGTCTC 1 cut(s) 1008
FaeI CATG 6 cut(s) 100, 295, 436, 716, 1100, 1186
FaqI GGGAC 1 cut(s) 179
FatI CATG 6 cut(s) 96, 291, 432, 712, 1096, 1182
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 6 cut(s) 6, 63, 501, 1168, 1171, 1174
FokI GGATG 1 cut(s) 75
FriOI GRGCYC 2 cut(s) 244, 832
Fsp4HI GCNGC 6 cut(s) 6, 63, 501, 1168, 1171, 1174
FspBI CTAG 2 cut(s) 723, 765
GlaI GCGC 3 cut(s) 513, 848, 1166
GluI GCNGC 6 cut(s) 6, 63, 501, 1168, 1171, 1174
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 515
HaeIII GGCC 2 cut(s) 40, 431
HgaI GACGC 1 cut(s) 54
HhaI GCGC 3 cut(s) 514, 849, 1167
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 6 cut(s) 100, 295, 436, 716, 1100, 1186
Hin6I GCGC 3 cut(s) 512, 847, 1165
HinP1I GCGC 3 cut(s) 512, 847, 1165
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 3 cut(s) 362, 479, 488
HphI GGTGA 2 cut(s) 208, 1208
Hpy166II GTNNAC 2 cut(s) 211, 742
Hpy188I TCNGA 6 cut(s) 80, 407, 484, 670, 834, 1118
Hpy188III TCNNGA 7 cut(s) 245, 305, 311, 349, 590, 723, 748
Hpy8I GTNNAC 2 cut(s) 211, 742
Hpy99I CGWCG 3 cut(s) 70, 80, 944
HpyAV CCTTC 2 cut(s) 773, 1223
HpyCH4III ACNGT 4 cut(s) 25, 188, 529, 1224
HpyCH4IV ACGT 5 cut(s) 75, 146, 207, 339, 409
HpyCH4V TGCA 9 cut(s) 162, 317, 423, 701, 824, 1001, 1173, 1186, 1207
HpyF10VI GCNNNNNNNGC 9 cut(s) 239, 500, 509, 770, 859, 1173, 1179, 1188, 1204
HpyF3I CTNAG 4 cut(s) 483, 669, 831, 1065
HpySE526I ACGT 5 cut(s) 75, 146, 207, 339, 409
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 6 cut(s) 100, 295, 436, 716, 1100, 1186
HspAI GCGC 3 cut(s) 512, 847, 1165
Kzo9I GATC 5 cut(s) 307, 571, 628, 791, 911
LguI GCTCTTC 1 cut(s) 951
LmnI GCTCC 1 cut(s) 809
Lsp1109I GCAGC 3 cut(s) 1157, 1179, 1185
LweI GCATC 3 cut(s) 304, 751, 862
MaeI CTAG 2 cut(s) 723, 765
MaeII ACGT 5 cut(s) 75, 146, 207, 339, 409
MaeIII GTNAC 1 cut(s) 142
MalI GATC 5 cut(s) 309, 573, 630, 793, 913
MboI GATC 5 cut(s) 307, 571, 628, 791, 911
MboII GAAGA 9 cut(s) 239, 288, 333, 398, 460, 631, 940, 965, 968
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 244, 832
MlsI TGGCCA 1 cut(s) 431
MluNI TGGCCA 1 cut(s) 431
MlyI GAGTC 1 cut(s) 488
MmeI TCCRAC 2 cut(s) 58, 656
Mox20I TGGCCA 1 cut(s) 431
MroXI GAANNNNTTC 1 cut(s) 234
MscI TGGCCA 1 cut(s) 431
MseI TTAA 5 cut(s) 270, 369, 396, 597, 899
Msp20I TGGCCA 1 cut(s) 431
MspA1I CMGCKG 2 cut(s) 112, 1170
MvnI CGCG 2 cut(s) 576, 849
MwoI GCNNNNNNNGC 9 cut(s) 239, 500, 509, 770, 859, 1173, 1179, 1188, 1204
NcoI CCATGG 1 cut(s) 712
NdeII GATC 5 cut(s) 307, 571, 628, 791, 911
NlaIII CATG 6 cut(s) 100, 295, 436, 716, 1100, 1186
NlaIV GGNNCC 3 cut(s) 523, 630, 805
NmuCI GTSAC 1 cut(s) 142
NspI RCATGY 1 cut(s) 1186
PaeI GCATGC 1 cut(s) 1186
PciSI GCTCTTC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 362, 488
PflFI GACNNNGTC 1 cut(s) 944
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 6 cut(s) 7, 64, 502, 1169, 1172, 1175
Ple19I CGATCG 1 cut(s) 574
PleI GAGTC 1 cut(s) 487
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 1210
PshBI ATTAAT 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 1210
PspFI CCCAGC 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 523, 630, 805
PspPI GGNCC 2 cut(s) 38, 1210
PspPPI RGGWCCY 1 cut(s) 1210
PstI CTGCAG 2 cut(s) 164, 1175
PsuI RGATCY 1 cut(s) 628
PsyI GACNNNGTC 1 cut(s) 944
PvuI CGATCG 1 cut(s) 574
PvuII CAGCTG 2 cut(s) 112, 1170
RgaI GCGATCGC 1 cut(s) 574
RsaI GTAC 4 cut(s) 74, 95, 412, 988
RsaNI GTAC 4 cut(s) 73, 94, 411, 987
SacI GAGCTC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 951
SaqAI TTAA 5 cut(s) 270, 369, 396, 597, 899
SatI GCNGC 6 cut(s) 6, 63, 501, 1168, 1171, 1174
Sau3AI GATC 5 cut(s) 307, 571, 628, 791, 911
Sau96I GGNCC 2 cut(s) 38, 1210
SchI GAGTC 1 cut(s) 488
SduI GDGCHC 2 cut(s) 244, 832
SfaAI GCGATCGC 1 cut(s) 574
SfaNI GCATC 3 cut(s) 304, 751, 862
SfcI CTRYAG 2 cut(s) 160, 1171
SgfI GCGATCGC 1 cut(s) 574
SinI GGWCC 1 cut(s) 1210
SmlI CTYRAG 2 cut(s) 355, 638
SmoI CTYRAG 2 cut(s) 355, 638
SphI GCATGC 1 cut(s) 1186
SsiI CCGC 5 cut(s) 47, 62, 171, 177, 501
SspMI CTAG 2 cut(s) 723, 765
SstI GAGCTC 1 cut(s) 244
StyI CCWWGG 2 cut(s) 712, 807
TaaI ACNGT 4 cut(s) 25, 188, 529, 1224
TaiI ACGT 5 cut(s) 78, 149, 210, 342, 412
TaqI TCGA 2 cut(s) 238, 747
TaqII GACCGA 1 cut(s) 116
TauI GCSGC 2 cut(s) 65, 503
TfiI GAWTC 2 cut(s) 362, 488
Tru1I TTAA 5 cut(s) 270, 369, 396, 597, 899
Tru9I TTAA 5 cut(s) 270, 369, 396, 597, 899
TscAI CASTG 3 cut(s) 532, 955, 986
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 4 cut(s) 5, 1167, 1170, 1173
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 5 cut(s) 269, 632, 800, 1085, 1102
TspGWI ACGGA 3 cut(s) 81, 139, 1161
TspRI CASTG 3 cut(s) 532, 955, 986
Tth111I GACNNNGTC 1 cut(s) 944
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 1210
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 4 cut(s) 554, 607, 622, 902
XbaI TCTAGA 1 cut(s) 722
XceI RCATGY 1 cut(s) 1186
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 2 cut(s) 723, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.