Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006582.1

Orthogroup ID

OG0010442

Physical Location & Seq

Genomic Coordinates Reverse (-)

71442 .. 74357

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006582.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgagggtcatgtggtctcatcgtgatccagatgccaggagaagtggaattgggaatgtgtttgtcaagaacttgagtgaagggattgataatgtagggctccacgatatgtttaggaaatttggaaatgttttgtcttgcaaagttgccatgtttgaggatgggaagagtaaaggctatggctttgttcagtttgagtctgaggaatcagcaattgctgctattgacaagctaaatggctctacagtcagagacaaacaattgtatgtcgcaaagtttgttagaaagagtgatcgagttttgcccaatcctgatgtgaaatatacaaatttgtatgtgaagaatttggatccaaatgtcggggaagagcttctggaagaaaagttctctgagttcgggaaaattataagctttgcaatagcaagggatgaaaatggaatttctagaggttttggctttgtgaactttgagagcccggatgatgctagaaaagcattggaatctctgaatggaactcaacttggttccaaggttctgtatgtagcgagagcacagaagaaggcagagcgtgaacacattttgcgtcgtcagtttgaggaaaaacggaaggagcaaatgttaaaattcaagggatcaaacgtgtatgtgaagaacattgatgatgatgtcactgatgaagagctcatagaccacttcagtcaatgtggcacgattacttctgcaaaaattatgagagatgagaaaggaataagcaagggctttggttttgtttgcttctctacccccgaggagggcaataaagctgtgattacatttcatggatatatgtttcatcggaagccattgtatgtcgctattgctcaaaggaaagaagaaagacaagcacagctgcaacttcagtatgcacagcgtatggcaggatttgctggtccttcaacagctgtcatccctggtggataccctcctatctactatcaggctccatctggtgttgttccaccagtgcctcctcgaccagggatgatgtatcagcctttgggattgaggccaggatggagacctaatggctttgcacctacctctggaccaggttatcaaccaccacctgttcctgttatgtccaatactccaaggcagcataggcaaaacagaggcagaataaatgggcatatgcttcctcagggaggtccatttattccacatttgcaacagtcaactcactcctcgaaggagtcaaacaatcagcagcctaagtatgctcctaatgggcgtcagcgtgacatgaataaaggatcaggagtctcatctactgcttccaattctgttggaggtgggtctcagggaccagagatgctgagtagtatgcttgctgctgcttctcctgagcagcagaaacagatacttggcgagcgtctcttcccactagttcaaacacacaagccggatcttgcttcaaaaattaccgggatgctgctggagatggacaactcagaactgctgcttttgttggagtctcctgagagtttggctgccaaagtgggagaagctgttcaggtcctcaagatctcgaagactaaagtatctagcaaagattcccttcattctagttacctttctgctgaggttgcagtcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

545

Amino Acids

60.31

Weight (kDa)

9.29

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36660
fragaria_vesca	FvH4_6g17300 FvH4_6g17300
malus_domestica	MD12G1102400.v1.1 MD14G1096300.v1.1
prunus_persica	Prupe.7G122400_v2.0.a1 Prupe.7G122400_v2.0.a1
pyrus_communis	pycom12g10040
rosa_chinensis	RchiOBHm_Chr3g0471421
rosa_laevigata	RLG00000024179
rosa_multiflora	Rmu_sc0006582.1_g000012 Rmu_sc0006582.1_g000013
rosa_roxburghii	Rroxscaffold_6G00409960
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh2BG190900 Rh2CG185900 Rh3AG167500 Rh3BG193000 Rh3CG183400 Rh3DG182500
rosa_wichuraiana	Rw3G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
AclWI	GGATC	6 cut(s)	20, 344, 357, 640, 1300, 1452
AcsI	RAATTY	5 cut(s)	119, 328, 343, 438, 623
AcuI	CTGAAG	2 cut(s)	679, 881
AcyI	GRCGYC	1 cut(s)	1270
AfiI	CCNNNNNNNGG	6 cut(s)	359, 790, 791, 1016, 1082, 1184
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	4 cut(s)	628, 936, 1430, 1455
AhlI	ACTAGT	1 cut(s)	1423
AjnI	CCWGG	5 cut(s)	35, 949, 1015, 1048, 1087
AloI	GAACNNNNNNTCC	4 cut(s)	368, 400, 1533, 1565
AluBI	AGCT	8 cut(s)	232, 370, 411, 682, 803, 889, 941, 1547
AluI	AGCT	8 cut(s)	232, 370, 411, 682, 803, 889, 941, 1547
Alw21I	GWGCWC	2 cut(s)	553, 684
Alw26I	GTCTC	7 cut(s)	21, 246, 1051, 1306, 1341, 1418, 1518
AlwI	GGATC	6 cut(s)	20, 344, 357, 640, 1300, 1452
Ama87I	CYCGRG	1 cut(s)	785
AoxI	GGCC	1 cut(s)	1046
ApoI	RAATTY	5 cut(s)	119, 328, 343, 438, 623
Asp700I	GAANNNNTTC	2 cut(s)	369, 1548
AspS9I	GGNCC	5 cut(s)	929, 1085, 1187, 1343, 1555
AsuC2I	CCSGG	2 cut(s)	476, 1465
AvaI	CYCGRG	1 cut(s)	785
AvaII	GGWCC	5 cut(s)	929, 1085, 1187, 1343, 1555
AxyI	CCTNAGG	1 cut(s)	1179
BaeI	ACNNNNGTAYC	2 cut(s)	1563, 1596
BamHI	GGATCC	1 cut(s)	349
BanII	GRGCYC	3 cut(s)	102, 476, 684
BbsI	GAAGAC	1 cut(s)	1577
Bbv12I	GWGCWC	2 cut(s)	553, 684
BbvCI	CCTCAGC	1 cut(s)	1620
BccI	CCATC	4 cut(s)	155, 991, 1047, 1474
BciT130I	CCWGG	5 cut(s)	37, 951, 1017, 1050, 1089
BciVI	GTATCC	1 cut(s)	950
BcnI	CCSGG	2 cut(s)	476, 1465
BcoDI	GTCTC	7 cut(s)	21, 246, 1051, 1306, 1341, 1418, 1518
BcuI	ACTAGT	1 cut(s)	1423
BfaI	CTAG	5 cut(s)	444, 486, 1424, 1584, 1605
BfmI	CTRYAG	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	950
BglII	AGATCT	1 cut(s)	1563
Bme1390I	CCNGG	7 cut(s)	37, 476, 951, 1017, 1050, 1089, 1465
Bme18I	GGWCC	5 cut(s)	929, 1085, 1187, 1343, 1555
BmeT110I	CYCGRG	1 cut(s)	785
BmgT120I	GGNCC	5 cut(s)	929, 1085, 1187, 1343, 1555
BmiI	GGNNCC	5 cut(s)	101, 351, 526, 981, 1344
BmrFI	CCNGG	7 cut(s)	37, 476, 951, 1017, 1050, 1089, 1465
BmsI	GCATC	4 cut(s)	22, 472, 1341, 1458
BpiI	GAAGAC	1 cut(s)	1577
BpmI	CTGGAG	1 cut(s)	1496
Bpu10I	CCTNAGC	2 cut(s)	1383, 1620
BpuEI	CTTGAG	2 cut(s)	94, 1544
BpuMI	CCSGG	2 cut(s)	476, 1465
BsaHI	GRCGYC	1 cut(s)	1270
BsaI	GGTCTC	3 cut(s)	21, 1051, 1341
BsaJI	CCNNGG	5 cut(s)	528, 786, 949, 1016, 1130
BsaXI	ACNNNNNCTCC	4 cut(s)	602, 632, 1533, 1563
Bsc4I	CCNNNNNNNGG	6 cut(s)	359, 790, 791, 1016, 1082, 1184
Bse1I	ACTGG	1 cut(s)	1001
Bse21I	CCTNAGG	1 cut(s)	1179
BseBI	CCWGG	5 cut(s)	37, 951, 1017, 1050, 1089
BseDI	CCNNGG	5 cut(s)	528, 786, 949, 1016, 1130
BseGI	GGATG	7 cut(s)	166, 433, 484, 945, 1026, 1058, 1473
BseLI	CCNNNNNNNGG	6 cut(s)	359, 790, 791, 1016, 1082, 1184
BseMII	CTCAG	9 cut(s)	192, 381, 1193, 1346, 1352, 1374, 1503, 1509, 1611
BseNI	ACTGG	1 cut(s)	1001
BseRI	GAGGAG	3 cut(s)	803, 999, 1213
BshFI	GGCC	1 cut(s)	1048
BsiHKAI	GWGCWC	2 cut(s)	553, 684
BsiHKCI	CYCGRG	1 cut(s)	785
BsiSI	CCGG	3 cut(s)	476, 1442, 1464
BslFI	GGGAC	1 cut(s)	1356
BslI	CCNNNNNNNGG	6 cut(s)	359, 790, 791, 1016, 1082, 1184
BsmAI	GTCTC	7 cut(s)	21, 246, 1051, 1306, 1341, 1418, 1518
BsmBI	CGTCTC	1 cut(s)	1418
BsmFI	GGGAC	1 cut(s)	1356
BsnI	GGCC	1 cut(s)	1048
Bso31I	GGTCTC	3 cut(s)	21, 1051, 1341
BsoBI	CYCGRG	1 cut(s)	785
Bsp1286I	GDGCHC	4 cut(s)	102, 476, 553, 684
Bsp143I	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
BspANI	GGCC	1 cut(s)	1048
BspCNI	CTCAG	9 cut(s)	193, 382, 1192, 1347, 1351, 1375, 1502, 1510, 1612
BspLI	GGNNCC	5 cut(s)	101, 351, 526, 981, 1344
BspPI	GGATC	6 cut(s)	20, 344, 357, 640, 1300, 1452
BspQI	GCTCTTC	2 cut(s)	360, 672
BspTNI	GGTCTC	3 cut(s)	21, 1051, 1341
BsrI	ACTGG	1 cut(s)	1001
BssECI	CCNNGG	5 cut(s)	528, 786, 949, 1016, 1130
BssMI	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
BssNI	GRCGYC	1 cut(s)	1270
BssT1I	CCWWGG	2 cut(s)	528, 1130
Bst2UI	CCWGG	5 cut(s)	37, 951, 1017, 1050, 1089
Bst4CI	ACNGT	2 cut(s)	247, 1212
Bst6I	CTCTTC	4 cut(s)	161, 360, 672, 1421
BstACI	GRCGYC	1 cut(s)	1270
BstAPI	GCANNNNNTGC	2 cut(s)	218, 923
BstC8I	GCNNGC	2 cut(s)	1368, 1409
BstENI	CCTNNNNNAGG	2 cut(s)	1014, 1182
BstF5I	GGATG	7 cut(s)	166, 433, 484, 945, 1026, 1058, 1473
BstKTI	GATC	7 cut(s)	28, 295, 352, 635, 1295, 1447, 1566
BstMAI	GTCTC	7 cut(s)	21, 246, 1051, 1306, 1341, 1418, 1518
BstMBI	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 491, 923, 1141, 1625
BstNI	CCWGG	5 cut(s)	37, 951, 1017, 1050, 1089
BstSCI	CCNGG	7 cut(s)	35, 474, 949, 1015, 1048, 1087, 1463
BstSFI	CTRYAG	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	1577
BstX2I	RGATCY	3 cut(s)	349, 1444, 1563
BstYI	RGATCY	3 cut(s)	349, 1444, 1563
Bsu36I	CCTNAGG	1 cut(s)	1179
BsuI	GTATCC	1 cut(s)	950
BsuRI	GGCC	1 cut(s)	1048
BtsCI	GGATG	7 cut(s)	166, 433, 484, 945, 1026, 1058, 1473
BtsIMutI	CAGTG	2 cut(s)	669, 1008
Cac8I	GCNNGC	2 cut(s)	1368, 1409
Cfr13I	GGNCC	5 cut(s)	929, 1085, 1187, 1343, 1555
CseI	GACGC	3 cut(s)	572, 1259, 1400
CsiI	ACCWGGT	1 cut(s)	1087
CviAII	CATG	4 cut(s)	10, 151, 818, 1282
DpnI	GATC	7 cut(s)	27, 294, 351, 634, 1294, 1446, 1565
DpnII	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
Eam1104I	CTCTTC	4 cut(s)	161, 360, 672, 1421
EarI	CTCTTC	4 cut(s)	161, 360, 672, 1421
Ecl136II	GAGCTC	1 cut(s)	682
Eco130I	CCWWGG	2 cut(s)	528, 1130
Eco24I	GRGCYC	3 cut(s)	102, 476, 684
Eco31I	GGTCTC	3 cut(s)	21, 1051, 1341
Eco47I	GGWCC	5 cut(s)	929, 1085, 1187, 1343, 1555
Eco53kI	GAGCTC	1 cut(s)	682
Eco57I	CTGAAG	2 cut(s)	679, 881
Eco81I	CCTNAGG	1 cut(s)	1179
Eco88I	CYCGRG	1 cut(s)	785
EcoICRI	GAGCTC	1 cut(s)	682
EcoNI	CCTNNNNNAGG	2 cut(s)	1014, 1182
EcoO109I	RGGNCCY	1 cut(s)	1555
EcoRII	CCWGG	5 cut(s)	35, 949, 1015, 1048, 1087
EcoT14I	CCWWGG	2 cut(s)	528, 1130
EcoT38I	GRGCYC	3 cut(s)	102, 476, 684
ErhI	CCWWGG	2 cut(s)	528, 1130
Esp3I	CGTCTC	1 cut(s)	1418
FaeI	CATG	4 cut(s)	13, 154, 821, 1285
FalI	AAGNNNNNCTT	2 cut(s)	1581, 1613
FaqI	GGGAC	1 cut(s)	1356
FatI	CATG	4 cut(s)	9, 150, 817, 1281
FauNDI	CATATG	1 cut(s)	1170
FokI	GGATG	7 cut(s)	173, 440, 491, 932, 1033, 1065, 1480
FriOI	GRGCYC	3 cut(s)	102, 476, 684
FspBI	CTAG	5 cut(s)	444, 486, 1424, 1584, 1605
GsuI	CTGGAG	1 cut(s)	1496
HaeIII	GGCC	1 cut(s)	1048
HapII	CCGG	3 cut(s)	476, 1442, 1464
HgaI	GACGC	3 cut(s)	572, 1259, 1400
Hin1I	GRCGYC	1 cut(s)	1270
Hin1II	CATG	4 cut(s)	13, 154, 821, 1285
HincII	GTYRAC	1 cut(s)	1215
HindII	GTYRAC	1 cut(s)	1215
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	7 cut(s)	197, 206, 500, 1232, 1299, 1511, 1592
HpaII	CCGG	3 cut(s)	476, 1442, 1464
Hpy166II	GTNNAC	3 cut(s)	463, 572, 1215
Hpy188I	TCNGA	6 cut(s)	202, 251, 391, 507, 837, 1492
Hpy8I	GTNNAC	3 cut(s)	463, 572, 1215
Hpy99I	CGWCG	1 cut(s)	588
HpyAV	CCTTC	6 cut(s)	74, 553, 601, 942, 1222, 1607
HpyCH4III	ACNGT	2 cut(s)	247, 1212
HpyCH4IV	ACGT	1 cut(s)	639
HpyCH4V	TGCA	8 cut(s)	141, 416, 722, 892, 905, 1073, 1207, 1628
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 491, 923, 1141, 1625
HpySE526I	ACGT	1 cut(s)	639
Hsp92I	GRCGYC	1 cut(s)	1270
Hsp92II	CATG	4 cut(s)	13, 154, 821, 1285
Kzo9I	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
LguI	GCTCTTC	2 cut(s)	360, 672
LmnI	GCTCC	4 cut(s)	105, 610, 985, 1264
LweI	GCATC	4 cut(s)	22, 472, 1341, 1458
MabI	ACCWGGT	1 cut(s)	1087
MaeI	CTAG	5 cut(s)	444, 486, 1424, 1584, 1605
MaeII	ACGT	1 cut(s)	639
MaeIII	GTNAC	3 cut(s)	667, 1277, 1607
MalI	GATC	7 cut(s)	27, 294, 351, 634, 1294, 1446, 1565
MboI	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
MfeI	CAATTG	3 cut(s)	213, 260, 1633
MflI	RGATCY	3 cut(s)	349, 1444, 1563
MhlI	GDGCHC	4 cut(s)	102, 476, 553, 684
MlyI	GAGTC	4 cut(s)	206, 1241, 1308, 1520
MmeI	TCCRAC	2 cut(s)	1306, 1488
MroXI	GAANNNNTTC	2 cut(s)	369, 1548
MseI	TTAA	1 cut(s)	620
MspA1I	CMGCKG	2 cut(s)	889, 941
MspI	CCGG	3 cut(s)	476, 1442, 1464
MspR9I	CCNGG	7 cut(s)	37, 476, 951, 1017, 1050, 1089, 1465
MunI	CAATTG	3 cut(s)	213, 260, 1633
MvaI	CCWGG	5 cut(s)	37, 951, 1017, 1050, 1089
MwoI	GCNNNNNNNGC	5 cut(s)	218, 491, 923, 1141, 1625
NciI	CCSGG	2 cut(s)	476, 1465
NdeI	CATATG	1 cut(s)	1170
NdeII	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
NlaIII	CATG	4 cut(s)	13, 154, 821, 1285
NlaIV	GGNNCC	5 cut(s)	101, 351, 526, 981, 1344
NmuCI	GTSAC	2 cut(s)	667, 1277
PciSI	GCTCTTC	2 cut(s)	360, 672
PdmI	GAANNNNTTC	2 cut(s)	369, 1548
PfeI	GAWTC	3 cut(s)	206, 500, 1592
PleI	GAGTC	4 cut(s)	205, 1240, 1307, 1519
PpsI	GAGTC	4 cut(s)	205, 1240, 1307, 1519
PpuMI	RGGWCCY	1 cut(s)	1555
PsiI	TTATAA	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	684
Psp5II	RGGWCCY	1 cut(s)	1555
Psp6I	CCWGG	5 cut(s)	35, 949, 1015, 1048, 1087
PspGI	CCWGG	5 cut(s)	35, 949, 1015, 1048, 1087
PspN4I	GGNNCC	5 cut(s)	101, 351, 526, 981, 1344
PspPI	GGNCC	5 cut(s)	929, 1085, 1187, 1343, 1555
PspPPI	RGGWCCY	1 cut(s)	1555
PsuI	RGATCY	3 cut(s)	349, 1444, 1563
PvuII	CAGCTG	2 cut(s)	889, 941
SacI	GAGCTC	1 cut(s)	684
SapI	GCTCTTC	2 cut(s)	360, 672
SaqAI	TTAA	1 cut(s)	620
Sau3AI	GATC	7 cut(s)	25, 292, 349, 632, 1292, 1444, 1563
Sau96I	GGNCC	5 cut(s)	929, 1085, 1187, 1343, 1555
SchI	GAGTC	4 cut(s)	206, 1241, 1308, 1520
ScrFI	CCNGG	7 cut(s)	37, 476, 951, 1017, 1050, 1089, 1465
SduI	GDGCHC	4 cut(s)	102, 476, 553, 684
SexAI	ACCWGGT	1 cut(s)	1087
SfaNI	GCATC	4 cut(s)	22, 472, 1341, 1458
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	5 cut(s)	929, 1085, 1187, 1343, 1555
SmlI	CTYRAG	2 cut(s)	73, 1559
SmoI	CTYRAG	2 cut(s)	73, 1559
SpeI	ACTAGT	1 cut(s)	1423
SspMI	CTAG	5 cut(s)	444, 486, 1424, 1584, 1605
SstI	GAGCTC	1 cut(s)	684
StyD4I	CCNGG	7 cut(s)	35, 474, 949, 1015, 1048, 1087, 1463
StyI	CCWWGG	2 cut(s)	528, 1130
TaaI	ACNGT	2 cut(s)	247, 1212
TaiI	ACGT	1 cut(s)	642
TaqI	TCGA	4 cut(s)	295, 1012, 1226, 1568
TfiI	GAWTC	3 cut(s)	206, 500, 1592
Tru1I	TTAA	1 cut(s)	620
Tru9I	TTAA	1 cut(s)	620
TscAI	CASTG	2 cut(s)	676, 1008
TseFI	GTSAC	2 cut(s)	667, 1277
Tsp45I	GTSAC	2 cut(s)	667, 1277
TspDTI	ATGAA	6 cut(s)	444, 690, 806, 821, 1298, 1589
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	2 cut(s)	676, 1008
VpaK11BI	GGWCC	5 cut(s)	929, 1085, 1187, 1343, 1555
XagI	CCTNNNNNAGG	2 cut(s)	1014, 1182
XapI	RAATTY	5 cut(s)	119, 328, 343, 438, 623
XbaI	TCTAGA	1 cut(s)	443
XmnI	GAANNNNTTC	2 cut(s)	369, 1548
XspI	CTAG	5 cut(s)	444, 486, 1424, 1584, 1605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.