Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010442

Physical Location & Seq

Genomic Coordinates Forward (+)

17283750 .. 17286257

Gene Structure 2508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGTCACCTGCGCGACATTCCGGACAGTGCTGGATCTGCAGGCGTTGCCCGAAGGGTGCATAGCCAACGTCATCTCATTCACAACACCTGGAGATGCGTGCAGGCTATCCTCGGTGTCCAAGATTTTCAGGTCGGCCGCAGAATGTGACGTGTTAACTGAGCGAGCTTATGGATTTAGAAGCCAACCTGTGAAGGTCAAAGTTAAAAAGTCTTATAAGTTGAATCCAACAACAGTGGGAGTAGAAGCCAATGAGCAGCTTGTGGTTTTGGAAAAAGATATTGTACTGGCATCGCATCTTAGGAATGCATGCATCGCATTCCCAAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0022414 GO:0030246 GO:0032501 GO:0032502 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box PP2

Protein Analysis

110

Amino Acids

12.03

Weight (kDa)

8.93

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36660
fragaria_vesca	FvH4_6g17300 FvH4_6g17300
malus_domestica	MD12G1102400.v1.1 MD14G1096300.v1.1
prunus_persica	Prupe.7G122400_v2.0.a1 Prupe.7G122400_v2.0.a1
pyrus_communis	pycom12g10040
rosa_chinensis	RchiOBHm_Chr3g0471421
rosa_laevigata	RLG00000024179
rosa_multiflora	Rmu_sc0006582.1_g000012 Rmu_sc0006582.1_g000013
rosa_roxburghii	Rroxscaffold_6G00409960
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh2BG190900 Rh2CG185900 Rh3AG167500 Rh3BG193000 Rh3CG183400 Rh3DG182500
rosa_wichuraiana	Rw3G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AarI	CACCTGC	1 cut(s)	17
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	1 cut(s)	138
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	1 cut(s)	285
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	223
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	167, 259
AluI	AGCT	2 cut(s)	167, 259
AlwI	GGATC	1 cut(s)	42
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	138, 257
BlsI	GCNGC	2 cut(s)	139, 258
Bme1390I	CCNGG	1 cut(s)	90
BmgBI	CACGTC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	85, 299, 304, 321
BpmI	CTGGAG	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	111
BsaWI	WCCGGW	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	291
BseAI	TCCGGA	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	268
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	14
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	22
BsmI	GAATGC	2 cut(s)	310, 317
BsnI	GGCC	1 cut(s)	137
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	151
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	14
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	34
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	28, 235
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	5 cut(s)	42, 100, 104, 165, 310
BstDEI	CTNAG	2 cut(s)	159, 299
BstEII	GGTNACC	1 cut(s)	4
BstFNI	CGCG	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 46, 314
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	312
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	137
BtgZI	GCGATG	2 cut(s)	276, 298
BtrI	CACGTC	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	33, 240
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	5 cut(s)	42, 100, 104, 165, 310
CfoI	GCGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	284
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	7 cut(s)	65, 106, 137, 167, 183, 248, 259
CviKI_1	RGCY	7 cut(s)	65, 106, 137, 167, 183, 248, 259
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	2 cut(s)	159, 299
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	135
Eco52I	CGGCCG	1 cut(s)	135
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	88
EcoT22I	ATGCAT	2 cut(s)	310, 314
FaeI	CATG	1 cut(s)	312
FaiI	YATR	4 cut(s)	62, 171, 216, 310
FatI	CATG	1 cut(s)	308
Fnu4HI	GCNGC	2 cut(s)	138, 257
Fsp4HI	GCNGC	2 cut(s)	138, 257
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	2 cut(s)	138, 257
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	14
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	223
HpaI	GTTAAC	1 cut(s)	156
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	47, 187
HpyCH4III	ACNGT	2 cut(s)	28, 235
HpyCH4IV	ACGT	2 cut(s)	69, 150
HpyCH4V	TGCA	5 cut(s)	40, 60, 102, 308, 312
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 46, 314
HpyF3I	CTNAG	2 cut(s)	159, 299
HpySE526I	ACGT	2 cut(s)	69, 150
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	156
Kzo9I	GATC	1 cut(s)	34
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	4 cut(s)	85, 299, 304, 321
MaeII	ACGT	2 cut(s)	69, 150
MaeIII	GTNAC	2 cut(s)	4, 146
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	1 cut(s)	121
Mph1103I	ATGCAT	2 cut(s)	310, 314
MroI	TCCGGA	1 cut(s)	21
MseI	TTAA	2 cut(s)	155, 204
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	2 cut(s)	310, 317
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	14
MwoI	GCNNNNNNNGC	3 cut(s)	37, 46, 314
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	4, 146
NsiI	ATGCAT	2 cut(s)	310, 314
NspI	RCATGY	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	312
PaqCI	CACCTGC	1 cut(s)	17
PctI	GAATGC	2 cut(s)	310, 317
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	139, 258
PsiI	TTATAA	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	88
PspEI	GGTNACC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	155, 204
SatI	GCNGC	2 cut(s)	138, 257
Sau3AI	GATC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	9 cut(s)	11, 72, 91, 134, 153, 169, 190, 198, 261
SfaNI	GCATC	4 cut(s)	85, 299, 304, 321
SfcI	CTRYAG	1 cut(s)	38
SphI	GCATGC	1 cut(s)	312
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	28, 235
TaiI	ACGT	2 cut(s)	72, 153
TasI	AATT	1 cut(s)	328
TatI	WGTACW	1 cut(s)	283
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	155, 204
Tru9I	TTAA	2 cut(s)	155, 204
TscAI	CASTG	2 cut(s)	33, 240
TseFI	GTSAC	2 cut(s)	4, 146
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	2 cut(s)	4, 146
TspRI	CASTG	2 cut(s)	33, 240
XceI	RCATGY	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	310, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.