Rh3BG193000

polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010442
Physical Location & Seq
Forward (+)
17082666 .. 17087885
5220 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG193000.1

Sequence Viewer

Length: 1641 bp
ATGTGGTCTCATCGTGATCCTGATGCCAGGAGAAGTGGAATTGGGAATGTGTTTGTCAAGAACTTGAGCGAAGGGATTGATAATGTAGGGCTCCACGATATGTTTAGGAAATTTGGAAATGTTTTGTCTTGCAAAGTTGCCATGTTTGAGGATGGGAAGAGTAAAGGCTATGGCTTTGTTCAGTTTGAGTCTGAGGAATCAGCAATTGCTGCTATTGACAAGCTAAATGGCTCTACAGTCGGAGACAAACAATTGTATGTCGCAAAGTTTGTTAGAAAGAGTGATCGAGTTTTGCCCAATCCTGATGTGAAATATACAAATTTGTATGTGAAGAATTTGGATCTAAATGTCAGGGAAGAGCTTCTGGAAGAAAAGTTCTCTGAGTTCGGGAAAATTATAAGCTTTGCAATAGCAAGGGATGAAAATGGAATTTCTAGAGGTTTTGGCTTTGTGAACTTTGAGAGCCCGGATGATGCTAGAAAAGCATTGGAATCTCTGAATGGAACTCAACTTGGTTCCAAGGTTCTGTATGTAGCGAGAGCACAGAAGAAGGCAGAGCGTGAACACATTTTGCGTTGTCAGTTTGAGGAAAAACGGAAGGAGCAAATGTTAAAATTCAAGGGATCAAACGTGTATGTGAAGAACATTGATGATGATGTCACTGATGAAGAGCTCATAGACCACTTCAGTCAATGTGGCACGATTACTTCTGCAAAAATTATGAGAGATGAGAAAGGAATAAGCAAGGGCTTTGGTTTTGTTTGTTTCTCTACCCCCGAGGAGGGCAATAAAGCTGTGATTACATTTCATGGATATATGTTTCATCGGAAGCCATTGTATGTCGCTATTGCTCAAAGGAAAGAAGAAAGACAAGCACAGCTGCAACTTCAGTATGCACAGCGTATGGCAGGATTTGCTGGTCCTTCAACAGCTGTCATCCCTGGTGGATACCCTCCTATCTACTATCAGGCTCCATCTGGTGTTGTTCCACCAGTGCCTCCTCGACCAGGGATGATGTATCAGCCTTTGGGATTGAGGCCAGGATGGAGACCTAATGGCTTTGCACCTACCTCTGGACCAGGTTATCAACCACCACCTGTTCCTGTTATGTCCAATACTCCAAGGCAGCATAGGCAAAACAGGGGCAGAATGAATGGGCATATGCTTCCTCAGGGAGGTCCATTTATTCCACATTTGCAACAGTCAACTCACTCCTCGAAGGAGTCAAACAATCAGCAGCGTTCGGGGCAGCCTAAGTATGTTCCTAATGGGCGTCAACGTGACATGAATAAAGGATCAGGAGTCTCATCTACTGCTTCCAATTCTGTTGGAGGTGGGTCTCAGGGACCAGAGATGCTGAGTAGTATGCTTGCTGCTGCTTCTCCTGAGCAGCAGAAACAGATACTTGGCGAGCGTCTCTTCCCACTAGTTCTTAAACACAAGCCGGATCTTGCTTCAAAAATTACCGGGATGCTGCTGGAGATGGACAACTCAGAACTGCTGCTTTTGTTGGAGTCTCCTGAGAGTTTGGCTGCCAAAGTGGGAGAAGCTGTTCAGGTCCTCAAGATCTCCAAGACTAAAGTATCTAGCAAAGATTCCCTTCATTCTAGTTACCTTTCTGCTGAGGTTGCAGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03018 map03013 map03015 map03018
Pfam Domains
Protein Families
PABP RRM_1

Protein Analysis

546

Amino Acids

60.37

Weight (kDa)

9.25

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 17 - 85 3.4e-20 RNA recognition motif
RRM_1 PF00076 108 - 176 6.9e-22 RNA recognition motif
RRM_1 PF00076 211 - 279 6.7e-17 RNA recognition motif
MLLE PF00658 456 - 521 3.3e-29 MLLE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 398
AclWI GGATC 5 cut(s) 11, 348, 631, 1303, 1455
AcsI RAATTY 5 cut(s) 110, 319, 334, 429, 614
AcuI CTGAAG 2 cut(s) 670, 872
AcyI GRCGYC 1 cut(s) 1273
AfiI CCNNNNNNNGG 5 cut(s) 781, 782, 1007, 1073, 1175
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 619, 927, 1458
AhlI ACTAGT 1 cut(s) 1426
AjnI CCWGG 5 cut(s) 26, 940, 1006, 1039, 1078
AloI GAACNNNNNNTCC 4 cut(s) 359, 391, 1536, 1568
AluBI AGCT 8 cut(s) 223, 361, 402, 673, 794, 880, 932, 1550
AluI AGCT 8 cut(s) 223, 361, 402, 673, 794, 880, 932, 1550
Alw21I GWGCWC 2 cut(s) 544, 675
Alw26I GTCTC 7 cut(s) 12, 237, 1042, 1309, 1344, 1421, 1521
AlwI GGATC 5 cut(s) 11, 348, 631, 1303, 1455
Ama87I CYCGRG 1 cut(s) 776
AoxI GGCC 1 cut(s) 1037
ApoI RAATTY 5 cut(s) 110, 319, 334, 429, 614
Asp700I GAANNNNTTC 2 cut(s) 360, 1551
AspS9I GGNCC 5 cut(s) 920, 1076, 1178, 1346, 1558
AsuC2I CCSGG 2 cut(s) 467, 1468
AvaI CYCGRG 1 cut(s) 776
AvaII GGWCC 5 cut(s) 920, 1076, 1178, 1346, 1558
AxyI CCTNAGG 1 cut(s) 1170
BaeI ACNNNNGTAYC 2 cut(s) 1566, 1599
BanII GRGCYC 3 cut(s) 93, 467, 675
Bbv12I GWGCWC 2 cut(s) 544, 675
BbvCI CCTCAGC 1 cut(s) 1623
BccI CCATC 4 cut(s) 146, 982, 1038, 1477
BciT130I CCWGG 5 cut(s) 28, 942, 1008, 1041, 1080
BciVI GTATCC 1 cut(s) 941
BcnI CCSGG 2 cut(s) 467, 1468
BcoDI GTCTC 7 cut(s) 12, 237, 1042, 1309, 1344, 1421, 1521
BcuI ACTAGT 1 cut(s) 1426
BfaI CTAG 5 cut(s) 435, 477, 1427, 1587, 1608
BfmI CTRYAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 941
BglII AGATCT 1 cut(s) 1566
Bme1390I CCNGG 7 cut(s) 28, 467, 942, 1008, 1041, 1080, 1468
Bme18I GGWCC 5 cut(s) 920, 1076, 1178, 1346, 1558
BmeT110I CYCGRG 1 cut(s) 776
BmgT120I GGNCC 5 cut(s) 920, 1076, 1178, 1346, 1558
BmiI GGNNCC 4 cut(s) 92, 517, 972, 1347
BmrFI CCNGG 7 cut(s) 28, 467, 942, 1008, 1041, 1080, 1468
BmsI GCATC 4 cut(s) 13, 463, 1344, 1461
BpmI CTGGAG 1 cut(s) 1499
Bpu10I CCTNAGC 2 cut(s) 1386, 1623
BpuEI CTTGAG 2 cut(s) 85, 1547
BpuMI CCSGG 2 cut(s) 467, 1468
BsaHI GRCGYC 1 cut(s) 1273
BsaI GGTCTC 3 cut(s) 12, 1042, 1344
BsaJI CCNNGG 5 cut(s) 519, 777, 940, 1007, 1121
BsaXI ACNNNNNCTCC 4 cut(s) 593, 623, 1536, 1566
Bsc4I CCNNNNNNNGG 5 cut(s) 781, 782, 1007, 1073, 1175
Bse1I ACTGG 1 cut(s) 992
Bse21I CCTNAGG 1 cut(s) 1170
BseBI CCWGG 5 cut(s) 28, 942, 1008, 1041, 1080
BseDI CCNNGG 5 cut(s) 519, 777, 940, 1007, 1121
BseGI GGATG 7 cut(s) 157, 424, 475, 936, 1017, 1049, 1476
BseLI CCNNNNNNNGG 5 cut(s) 781, 782, 1007, 1073, 1175
BseMII CTCAG 9 cut(s) 183, 372, 1184, 1349, 1355, 1377, 1506, 1512, 1614
BseNI ACTGG 1 cut(s) 992
BseRI GAGGAG 3 cut(s) 794, 990, 1204
BshFI GGCC 1 cut(s) 1039
BsiHKAI GWGCWC 2 cut(s) 544, 675
BsiHKCI CYCGRG 1 cut(s) 776
BsiSI CCGG 3 cut(s) 467, 1445, 1467
BslFI GGGAC 1 cut(s) 1359
BslI CCNNNNNNNGG 5 cut(s) 781, 782, 1007, 1073, 1175
BsmAI GTCTC 7 cut(s) 12, 237, 1042, 1309, 1344, 1421, 1521
BsmBI CGTCTC 1 cut(s) 1421
BsmFI GGGAC 1 cut(s) 1359
BsnI GGCC 1 cut(s) 1039
Bso31I GGTCTC 3 cut(s) 12, 1042, 1344
BsoBI CYCGRG 1 cut(s) 776
Bsp1286I GDGCHC 4 cut(s) 93, 467, 544, 675
Bsp143I GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
BspANI GGCC 1 cut(s) 1039
BspCNI CTCAG 9 cut(s) 184, 373, 1183, 1350, 1354, 1378, 1505, 1513, 1615
BspLI GGNNCC 4 cut(s) 92, 517, 972, 1347
BspPI GGATC 5 cut(s) 11, 348, 631, 1303, 1455
BspQI GCTCTTC 2 cut(s) 351, 663
BspTNI GGTCTC 3 cut(s) 12, 1042, 1344
BsrI ACTGG 1 cut(s) 992
BssECI CCNNGG 5 cut(s) 519, 777, 940, 1007, 1121
BssMI GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
BssNI GRCGYC 1 cut(s) 1273
BssT1I CCWWGG 2 cut(s) 519, 1121
Bst2UI CCWGG 5 cut(s) 28, 942, 1008, 1041, 1080
Bst4CI ACNGT 2 cut(s) 238, 1203
Bst6I CTCTTC 4 cut(s) 152, 351, 663, 1424
BstACI GRCGYC 1 cut(s) 1273
BstAPI GCANNNNNTGC 2 cut(s) 209, 914
BstC8I GCNNGC 2 cut(s) 1371, 1412
BstENI CCTNNNNNAGG 2 cut(s) 1005, 1173
BstF5I GGATG 7 cut(s) 157, 424, 475, 936, 1017, 1049, 1476
BstKTI GATC 7 cut(s) 19, 286, 343, 626, 1298, 1450, 1569
BstMAI GTCTC 7 cut(s) 12, 237, 1042, 1309, 1344, 1421, 1521
BstMBI GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
BstMWI GCNNNNNNNGC 6 cut(s) 209, 482, 914, 1132, 1246, 1628
BstNI CCWGG 5 cut(s) 28, 942, 1008, 1041, 1080
BstSCI CCNGG 7 cut(s) 26, 465, 940, 1006, 1039, 1078, 1466
BstSFI CTRYAG 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 340, 1447, 1566
BstYI RGATCY 3 cut(s) 340, 1447, 1566
Bsu36I CCTNAGG 1 cut(s) 1170
BsuI GTATCC 1 cut(s) 941
BsuRI GGCC 1 cut(s) 1039
BtsCI GGATG 7 cut(s) 157, 424, 475, 936, 1017, 1049, 1476
BtsIMutI CAGTG 2 cut(s) 660, 999
Cac8I GCNNGC 2 cut(s) 1371, 1412
Cfr13I GGNCC 5 cut(s) 920, 1076, 1178, 1346, 1558
CseI GACGC 2 cut(s) 1262, 1403
CsiI ACCWGGT 1 cut(s) 1078
CviAII CATG 3 cut(s) 142, 809, 1285
DpnI GATC 7 cut(s) 18, 285, 342, 625, 1297, 1449, 1568
DpnII GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
Eam1104I CTCTTC 4 cut(s) 152, 351, 663, 1424
EarI CTCTTC 4 cut(s) 152, 351, 663, 1424
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 519, 1121
Eco24I GRGCYC 3 cut(s) 93, 467, 675
Eco31I GGTCTC 3 cut(s) 12, 1042, 1344
Eco47I GGWCC 5 cut(s) 920, 1076, 1178, 1346, 1558
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 670, 872
Eco81I CCTNAGG 1 cut(s) 1170
Eco88I CYCGRG 1 cut(s) 776
EcoICRI GAGCTC 1 cut(s) 673
EcoNI CCTNNNNNAGG 2 cut(s) 1005, 1173
EcoO109I RGGNCCY 1 cut(s) 1558
EcoRII CCWGG 5 cut(s) 26, 940, 1006, 1039, 1078
EcoT14I CCWWGG 2 cut(s) 519, 1121
EcoT38I GRGCYC 3 cut(s) 93, 467, 675
ErhI CCWWGG 2 cut(s) 519, 1121
Esp3I CGTCTC 1 cut(s) 1421
FaeI CATG 3 cut(s) 145, 812, 1288
FalI AAGNNNNNCTT 2 cut(s) 1584, 1616
FaqI GGGAC 1 cut(s) 1359
FatI CATG 3 cut(s) 141, 808, 1284
FauNDI CATATG 1 cut(s) 1161
FokI GGATG 7 cut(s) 164, 431, 482, 923, 1024, 1056, 1483
FriOI GRGCYC 3 cut(s) 93, 467, 675
FspBI CTAG 5 cut(s) 435, 477, 1427, 1587, 1608
GsuI CTGGAG 1 cut(s) 1499
HaeIII GGCC 1 cut(s) 1039
HapII CCGG 3 cut(s) 467, 1445, 1467
HgaI GACGC 2 cut(s) 1262, 1403
Hin1I GRCGYC 1 cut(s) 1273
Hin1II CATG 3 cut(s) 145, 812, 1288
HincII GTYRAC 2 cut(s) 1206, 1277
HindII GTYRAC 2 cut(s) 1206, 1277
HindIII AAGCTT 1 cut(s) 400
HinfI GANTC 7 cut(s) 188, 197, 491, 1223, 1302, 1514, 1595
HpaII CCGG 3 cut(s) 467, 1445, 1467
Hpy166II GTNNAC 4 cut(s) 454, 563, 1206, 1277
Hpy188I TCNGA 6 cut(s) 193, 242, 382, 498, 828, 1495
Hpy8I GTNNAC 4 cut(s) 454, 563, 1206, 1277
HpyAV CCTTC 6 cut(s) 65, 544, 592, 933, 1213, 1610
HpyCH4III ACNGT 2 cut(s) 238, 1203
HpyCH4IV ACGT 2 cut(s) 630, 1279
HpyCH4V TGCA 8 cut(s) 132, 407, 713, 883, 896, 1064, 1198, 1631
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 482, 914, 1132, 1246, 1628
HpySE526I ACGT 2 cut(s) 630, 1279
Hsp92I GRCGYC 1 cut(s) 1273
Hsp92II CATG 3 cut(s) 145, 812, 1288
Kzo9I GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
LguI GCTCTTC 2 cut(s) 351, 663
LmnI GCTCC 3 cut(s) 96, 601, 976
LweI GCATC 4 cut(s) 13, 463, 1344, 1461
MabI ACCWGGT 1 cut(s) 1078
MaeI CTAG 5 cut(s) 435, 477, 1427, 1587, 1608
MaeII ACGT 2 cut(s) 630, 1279
MaeIII GTNAC 3 cut(s) 658, 1280, 1610
MalI GATC 7 cut(s) 18, 285, 342, 625, 1297, 1449, 1568
MboI GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
MboII GAAGA 9 cut(s) 169, 343, 368, 380, 559, 652, 680, 875, 1411
MfeI CAATTG 3 cut(s) 204, 251, 1636
MflI RGATCY 3 cut(s) 340, 1447, 1566
MhlI GDGCHC 4 cut(s) 93, 467, 544, 675
MlyI GAGTC 4 cut(s) 197, 1232, 1311, 1523
MmeI TCCRAC 3 cut(s) 220, 1309, 1491
MroXI GAANNNNTTC 2 cut(s) 360, 1551
MseI TTAA 2 cut(s) 611, 1434
MspA1I CMGCKG 2 cut(s) 880, 932
MspI CCGG 3 cut(s) 467, 1445, 1467
MspR9I CCNGG 7 cut(s) 28, 467, 942, 1008, 1041, 1080, 1468
MunI CAATTG 3 cut(s) 204, 251, 1636
MvaI CCWGG 5 cut(s) 28, 942, 1008, 1041, 1080
MwoI GCNNNNNNNGC 6 cut(s) 209, 482, 914, 1132, 1246, 1628
NciI CCSGG 2 cut(s) 467, 1468
NdeI CATATG 1 cut(s) 1161
NdeII GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
NlaIII CATG 3 cut(s) 145, 812, 1288
NlaIV GGNNCC 4 cut(s) 92, 517, 972, 1347
NmuCI GTSAC 2 cut(s) 658, 1280
PciSI GCTCTTC 2 cut(s) 351, 663
PdmI GAANNNNTTC 2 cut(s) 360, 1551
PfeI GAWTC 3 cut(s) 197, 491, 1595
PleI GAGTC 4 cut(s) 196, 1231, 1310, 1522
PpsI GAGTC 4 cut(s) 196, 1231, 1310, 1522
PpuMI RGGWCCY 1 cut(s) 1558
PsiI TTATAA 1 cut(s) 398
Psp124BI GAGCTC 1 cut(s) 675
Psp5II RGGWCCY 1 cut(s) 1558
Psp6I CCWGG 5 cut(s) 26, 940, 1006, 1039, 1078
PspGI CCWGG 5 cut(s) 26, 940, 1006, 1039, 1078
PspN4I GGNNCC 4 cut(s) 92, 517, 972, 1347
PspPI GGNCC 5 cut(s) 920, 1076, 1178, 1346, 1558
PspPPI RGGWCCY 1 cut(s) 1558
PsuI RGATCY 3 cut(s) 340, 1447, 1566
PvuII CAGCTG 2 cut(s) 880, 932
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 2 cut(s) 351, 663
SaqAI TTAA 2 cut(s) 611, 1434
Sau3AI GATC 7 cut(s) 16, 283, 340, 623, 1295, 1447, 1566
Sau96I GGNCC 5 cut(s) 920, 1076, 1178, 1346, 1558
SchI GAGTC 4 cut(s) 197, 1232, 1311, 1523
ScrFI CCNGG 7 cut(s) 28, 467, 942, 1008, 1041, 1080, 1468
SduI GDGCHC 4 cut(s) 93, 467, 544, 675
SexAI ACCWGGT 1 cut(s) 1078
SfaNI GCATC 4 cut(s) 13, 463, 1344, 1461
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 5 cut(s) 920, 1076, 1178, 1346, 1558
SmlI CTYRAG 2 cut(s) 64, 1562
SmoI CTYRAG 2 cut(s) 64, 1562
SpeI ACTAGT 1 cut(s) 1426
SspMI CTAG 5 cut(s) 435, 477, 1427, 1587, 1608
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 7 cut(s) 26, 465, 940, 1006, 1039, 1078, 1466
StyI CCWWGG 2 cut(s) 519, 1121
TaaI ACNGT 2 cut(s) 238, 1203
TaiI ACGT 2 cut(s) 633, 1282
TaqI TCGA 3 cut(s) 286, 1003, 1217
TfiI GAWTC 3 cut(s) 197, 491, 1595
Tru1I TTAA 2 cut(s) 611, 1434
Tru9I TTAA 2 cut(s) 611, 1434
TscAI CASTG 2 cut(s) 667, 999
TseFI GTSAC 2 cut(s) 658, 1280
Tsp45I GTSAC 2 cut(s) 658, 1280
TspDTI ATGAA 7 cut(s) 435, 681, 797, 812, 1166, 1301, 1592
TspGWI ACGGA 1 cut(s) 610
TspRI CASTG 2 cut(s) 667, 999
VpaK11BI GGWCC 5 cut(s) 920, 1076, 1178, 1346, 1558
XagI CCTNNNNNAGG 2 cut(s) 1005, 1173
XapI RAATTY 5 cut(s) 110, 319, 334, 429, 614
XbaI TCTAGA 1 cut(s) 434
XmnI GAANNNNTTC 2 cut(s) 360, 1551
XspI CTAG 5 cut(s) 435, 477, 1427, 1587, 1608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.