Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010442

Physical Location & Seq

Genomic Coordinates Forward (+)

17167735 .. 17179065

Gene Structure 11331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG190900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTCACCTGCGCAACATTCCGGACAGTGTTGGATCTGCAGGCGTTGCCCGAAGGGTGCATAGCCAACGTCATCTCATTCACAACACCTCGAGATGCGTGCAGGCTATCCTCGGTGTCCAAGATTTTCAGGTCGGCCGCAGAATGTGACGCGGTCTGGAACAAGTTCTCTGAGTTCGGGAAAATTATAAGCTTTGCAATAGCAAGGGATGAAAATGGAATTTCTAGAGGTTTTGGCTTTGTGAACTTTGAGAGCCCGGATGATGCTAGAAAAGCAATGGAATCTCTGAATGGAACTCAACTTGGTTCCAAGGTTCTGTATGTAGCGAGAGCACAAAAGAAGGCAGAGCGTGAACACATTTTGCGTCGTCAGTTTGAGGAAAAACGGAAGGAGCAAATGTTAAAATTCAAGAGATCAAACGTGTATGTGAAGAACATTGATGATGATGTCACTGATGAAAATACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03018 map03013 map03015 map03018

Pfam Domains

Protein Families

PABP RRM_1

Protein Analysis

156

Amino Acids

17.71

Weight (kDa)

8.93

Isoelectric Point (pI)

46.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	14 - 56	5.9e-06	F-box-like
RRM_1	PF00076	52 - 106	4e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010442)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36660
fragaria_vesca	FvH4_6g17300 FvH4_6g17300
malus_domestica	MD12G1102400.v1.1 MD14G1096300.v1.1
prunus_persica	Prupe.7G122400_v2.0.a1 Prupe.7G122400_v2.0.a1
pyrus_communis	pycom12g10040
rosa_chinensis	RchiOBHm_Chr3g0471421
rosa_laevigata	RLG00000024179
rosa_multiflora	Rmu_sc0006582.1_g000012 Rmu_sc0006582.1_g000013
rosa_roxburghii	Rroxscaffold_6G00409960
rosa_rugosa	Rorug03G0117700
rosa_samantha	Rh2BG190900 Rh2CG185900 Rh3AG167500 Rh3BG193000 Rh3CG183400 Rh3DG182500
rosa_wichuraiana	Rw3G015780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AarI	CACCTGC	1 cut(s)	17
Acc16I	TGCGCA	1 cut(s)	13
Acc36I	ACCTGC	1 cut(s)	17
AccII	CGCG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	21
AciI	CCGC	2 cut(s)	138, 152
AclWI	GGATC	1 cut(s)	42
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	2 cut(s)	219, 404
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw21I	GWGCWC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	42
Ama87I	CYCGRG	1 cut(s)	90
Aor13HI	TCCGGA	1 cut(s)	21
AoxI	GGCC	1 cut(s)	135
ApoI	RAATTY	2 cut(s)	219, 404
Asp700I	GAANNNNTTC	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	81, 115
BcnI	CCSGG	1 cut(s)	257
BfaI	CTAG	2 cut(s)	225, 267
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	307
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	85, 253
BpuMI	CCSGG	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	111, 309
BsaWI	WCCGGW	1 cut(s)	21
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bse3DI	GCAATG	1 cut(s)	282
BseAI	TCCGGA	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	111, 309
BseGI	GGATG	2 cut(s)	214, 265
BseMI	GCAATG	1 cut(s)	282
BseMII	CTCAG	1 cut(s)	162
BseX3I	CGGCCG	1 cut(s)	135
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	137
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	22, 257
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	2 cut(s)	257, 334
Bsp13I	TCCGGA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	34, 413
BspACI	CCGC	2 cut(s)	138, 152
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	17
BspPI	GGATC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	282
BssECI	CCNNGG	2 cut(s)	111, 309
BssMI	GATC	2 cut(s)	34, 413
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	46
BstC8I	GCNNGC	3 cut(s)	42, 100, 104
BstDEI	CTNAG	1 cut(s)	171
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	214, 265
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	2 cut(s)	37, 416
BstMBI	GATC	2 cut(s)	34, 413
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	2 cut(s)	46, 272
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	38
BstUI	CGCG	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	214, 265
BtsIMutI	CAGTG	2 cut(s)	33, 450
BveI	ACCTGC	1 cut(s)	17
Cac8I	GCNNGC	3 cut(s)	42, 100, 104
CfoI	GCGC	1 cut(s)	14
CseI	GACGC	2 cut(s)	158, 353
CviJI	RGCY	6 cut(s)	65, 106, 137, 192, 237, 255
CviKI_1	RGCY	6 cut(s)	65, 106, 137, 192, 237, 255
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	36, 415
DpnII	GATC	2 cut(s)	34, 413
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	309
FaiI	YATR	4 cut(s)	62, 188, 321, 426
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	2 cut(s)	221, 272
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	2 cut(s)	225, 267
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	22, 257
HgaI	GACGC	2 cut(s)	158, 353
HhaI	GCGC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	281
HpaII	CCGG	2 cut(s)	22, 257
Hpy166II	GTNNAC	2 cut(s)	244, 353
Hpy188I	TCNGA	2 cut(s)	172, 288
Hpy188III	TCNNGA	6 cut(s)	22, 92, 157, 178, 225, 409
Hpy8I	GTNNAC	2 cut(s)	244, 353
Hpy99I	CGWCG	1 cut(s)	369
HpyAV	CCTTC	3 cut(s)	47, 334, 382
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	69, 420
HpyCH4V	TGCA	4 cut(s)	40, 60, 102, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	46, 272
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	69, 420
HspAI	GCGC	1 cut(s)	12
Kpn2I	TCCGGA	1 cut(s)	21
Kzo9I	GATC	2 cut(s)	34, 413
LmnI	GCTCC	1 cut(s)	391
LpnPI	CCDG	7 cut(s)	22, 26, 35, 88, 115, 142, 270
LweI	GCATC	2 cut(s)	85, 253
MaeI	CTAG	2 cut(s)	225, 267
MaeII	ACGT	2 cut(s)	69, 420
MaeIII	GTNAC	3 cut(s)	4, 146, 448
MalI	GATC	2 cut(s)	36, 415
MboI	GATC	2 cut(s)	34, 413
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	257, 334
MluCI	AATT	3 cut(s)	183, 219, 404
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	4 cut(s)	99, 121, 221, 370
MroI	TCCGGA	1 cut(s)	21
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	1 cut(s)	401
MspI	CCGG	2 cut(s)	22, 257
MspR9I	CCNGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	46, 272
NciI	CCSGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	34, 413
NlaIV	GGNNCC	1 cut(s)	307
NmuCI	GTSAC	3 cut(s)	4, 146, 448
NsbI	TGCGCA	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	90
PaqCI	CACCTGC	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	281
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	307
PstI	CTGCAG	1 cut(s)	42
PsuI	RGATCY	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	34, 413
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	257, 334
SetI	ASST	8 cut(s)	11, 72, 91, 134, 194, 232, 315, 423
SfaNI	GCATC	2 cut(s)	85, 253
SfcI	CTRYAG	1 cut(s)	38
Sfr274I	CTCGAG	1 cut(s)	90
SlaI	CTCGAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	183, 219, 404
SsiI	CCGC	2 cut(s)	138, 152
SspMI	CTAG	2 cut(s)	225, 267
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	72, 423
TaqI	TCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	183, 219, 404
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	2 cut(s)	33, 457
TseFI	GTSAC	3 cut(s)	4, 146, 448
Tsp45I	GTSAC	3 cut(s)	4, 146, 448
TspDTI	ATGAA	2 cut(s)	225, 471
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	33, 457
Tth111I	GACNNNGTC	1 cut(s)	152
XapI	RAATTY	2 cut(s)	219, 404
XbaI	TCTAGA	1 cut(s)	224
XhoI	CTCGAG	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	225, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.