Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0014069

Physical Location & Seq

Genomic Coordinates Reverse (-)

15577512 .. 15578105

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G140100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

GTACCAACTGTGGAAAAAATCCTTATAGATGCTACTATAGGACGCGCATTAGAGGCGCTACTAGGAGCTGTTTCACAAGCAAGGGAGAGAGCACACATGTATGAATCTATTCTTGCACAACTAGAATTCACAATTCAAACCATCACTCCAAAAATCAGTGAAATCGATCATCTTTCTGAAGAAGATTTCCCAGACGATGTCATTTACCGAATACGTCTACAGCTGATTCAAGGCAGGGAACTAGTCAATAAGTGCTCGAATGCGGGTTGCTGCAACTTATGGAAGAGCCAAATGTACTACAAGAAGCTCCAAGAGTTGGATGACTCTCTTCGGAGGCTGATTACTATTGATTTGCAAGTTAAGGTGGCACTGGATGTTATAAGGATATCGACTGAGATGAAGGAATTGTGTAGGAGATGGGATCAAAAGAATAAAATGGATGTGCATGGGGATGGCAGGGGATGGATTTTTAACATAAGTGGAAGTAAGGTTTTGGGTAAGTTTTCTGGATTGAAGAGGCTTGTGCAGACTGTGCAGTCAGCACCAAAGCGAATCCTTATGAATTTGGTTACATGTGGGGCTATCACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050896 GO:0051704 GO:0051707

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPW8

Protein Analysis

198

Amino Acids

22.43

Weight (kDa)

8.59

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50450 AT3G50460 AT3G50470 AT3G50480 AT3G50480
malus_domestica	MD02G1163800.v1.1
prunus_persica	Prupe.7G140100_v2.0.a1
rosa_laevigata	RLG00000017290
rosa_multiflora	Rmu_ssc0000257.1_g000011
rosa_roxburghii	Rroxscaffold_2G00139110
rosa_rugosa	Rorug02G0119300
rosa_samantha	Rh2AG168800 Rh2BG176000 Rh2CG174400 Rh2DG174300 Rh6DG281400
rosa_wichuraiana	Rw2G013210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	380
AasI	GACNNNNNNGTC	1 cut(s)	535
AccB7I	CCANNNNNTGG	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	217
AccII	CGCG	1 cut(s)	45
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	1 cut(s)	429
AcsI	RAATTY	2 cut(s)	125, 562
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	2 cut(s)	3, 296
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	2 cut(s)	96, 572
AgsI	TTSAA	3 cut(s)	137, 230, 514
AhlI	ACTAGT	1 cut(s)	241
AluBI	AGCT	3 cut(s)	68, 223, 307
AluI	AGCT	3 cut(s)	68, 223, 307
Alw21I	GWGCWC	2 cut(s)	94, 257
AlwI	GGATC	1 cut(s)	429
ApeKI	GCWGC	1 cut(s)	270
ApoI	RAATTY	2 cut(s)	125, 562
Asp700I	GAANNNNTTC	1 cut(s)	108
AspLEI	GCGC	2 cut(s)	47, 58
Bbv12I	GWGCWC	2 cut(s)	94, 257
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	4 cut(s)	149, 411, 446, 456
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	3 cut(s)	62, 122, 242
BfmI	CTRYAG	2 cut(s)	36, 218
BfoI	RGCGCY	1 cut(s)	59
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmsI	GCATC	1 cut(s)	19
Bsa29I	ATCGAT	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	375
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	5 cut(s)	325, 379, 445, 457, 467
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	375
BseXI	GCAGC	1 cut(s)	257
BsgI	GTGCAG	2 cut(s)	545, 554
Bsh1236I	CGCG	1 cut(s)	45
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	94, 257
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	94, 257
Bsp143I	GATC	2 cut(s)	166, 421
BspACI	CCGC	1 cut(s)	263
BspCNI	CTCAG	1 cut(s)	385
BspDI	ATCGAT	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	429
BspQI	GCTCTTC	1 cut(s)	278
BsrI	ACTGG	1 cut(s)	375
BssMI	GATC	2 cut(s)	166, 421
Bst4CI	ACNGT	2 cut(s)	10, 532
Bst6I	CTCTTC	3 cut(s)	278, 333, 509
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	5 cut(s)	325, 379, 445, 457, 467
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	47, 58
BstKTI	GATC	2 cut(s)	169, 424
BstMBI	GATC	2 cut(s)	166, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 532
BstNSI	RCATGY	2 cut(s)	100, 576
BstSFI	CTRYAG	2 cut(s)	36, 218
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	257
Bsu15I	ATCGAT	1 cut(s)	165
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	5 cut(s)	325, 379, 445, 457, 467
BtsIMutI	CAGTG	2 cut(s)	163, 368
CfoI	GCGC	2 cut(s)	47, 58
ClaI	ATCGAT	1 cut(s)	165
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	2, 295
CviAII	CATG	3 cut(s)	97, 446, 573
CviJI	RGCY	7 cut(s)	68, 223, 288, 307, 337, 520, 581
CviKI_1	RGCY	7 cut(s)	68, 223, 288, 307, 337, 520, 581
CviQI	GTAC	2 cut(s)	2, 295
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	2 cut(s)	168, 423
DpnII	GATC	2 cut(s)	166, 421
DrdI	GACNNNNNNGTC	1 cut(s)	535
DseDI	GACNNNNNNGTC	1 cut(s)	535
Eam1104I	CTCTTC	3 cut(s)	278, 333, 509
EarI	CTCTTC	3 cut(s)	278, 333, 509
Eco32I	GATATC	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	125
EcoRV	GATATC	1 cut(s)	387
FaeI	CATG	3 cut(s)	100, 449, 576
FatI	CATG	3 cut(s)	96, 445, 572
FauI	CCCGC	1 cut(s)	256
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	5 cut(s)	332, 386, 452, 464, 474
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	3 cut(s)	62, 122, 242
GlaI	GCGC	2 cut(s)	46, 57
GluI	GCNGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	59
HgaI	GACGC	1 cut(s)	51
HhaI	GCGC	2 cut(s)	47, 58
Hin1II	CATG	3 cut(s)	100, 449, 576
Hin6I	GCGC	2 cut(s)	45, 56
HinP1I	GCGC	2 cut(s)	45, 56
HinfI	GANTC	4 cut(s)	104, 226, 323, 552
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	178, 333
Hpy188III	TCNNGA	1 cut(s)	507
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	10, 532
HpyCH4IV	ACGT	1 cut(s)	214
HpyCH4V	TGCA	6 cut(s)	116, 273, 355, 445, 526, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 532
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	1 cut(s)	214
Hsp92II	CATG	3 cut(s)	100, 449, 576
HspAI	GCGC	2 cut(s)	45, 56
Kzo9I	GATC	2 cut(s)	166, 421
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	2 cut(s)	65, 312
LpnPI	CCDG	5 cut(s)	204, 220, 356, 442, 492
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	62, 122, 242
MaeII	ACGT	1 cut(s)	214
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	2 cut(s)	168, 423
MboI	GATC	2 cut(s)	166, 421
MboII	GAAGA	5 cut(s)	191, 194, 295, 320, 526
MhlI	GDGCHC	2 cut(s)	94, 257
MluCI	AATT	4 cut(s)	125, 132, 404, 562
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	46, 327, 510
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	360, 471
MslI	CAYNNNNRTG	2 cut(s)	99, 450
MspA1I	CMGCKG	1 cut(s)	223
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	53, 532
NdeII	GATC	2 cut(s)	166, 421
NlaIII	CATG	3 cut(s)	100, 449, 576
NspI	RCATGY	2 cut(s)	100, 576
PciI	ACATGT	2 cut(s)	96, 572
PciSI	GCTCTTC	1 cut(s)	278
PctI	GAATGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	3 cut(s)	104, 226, 552
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PscI	ACATGT	2 cut(s)	96, 572
PsiI	TTATAA	1 cut(s)	380
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	2 cut(s)	3, 296
RsaNI	GTAC	2 cut(s)	2, 295
RseI	CAYNNNNRTG	2 cut(s)	99, 450
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	2 cut(s)	360, 471
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	166, 421
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	94, 257
SetI	ASST	6 cut(s)	70, 217, 225, 309, 366, 492
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	2 cut(s)	36, 218
SmiMI	CAYNNNNRTG	2 cut(s)	99, 450
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	4 cut(s)	125, 132, 404, 562
SsiI	CCGC	1 cut(s)	263
SspMI	CTAG	3 cut(s)	62, 122, 242
TaaI	ACNGT	2 cut(s)	10, 532
TaiI	ACGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	165, 257, 389
TasI	AATT	4 cut(s)	125, 132, 404, 562
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	3 cut(s)	104, 226, 552
Tru1I	TTAA	2 cut(s)	360, 471
Tru9I	TTAA	2 cut(s)	360, 471
TscAI	CASTG	2 cut(s)	163, 375
TseI	GCWGC	1 cut(s)	270
TspDTI	ATGAA	3 cut(s)	117, 413, 575
TspRI	CASTG	2 cut(s)	163, 375
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	316
XapI	RAATTY	2 cut(s)	125, 562
XceI	RCATGY	2 cut(s)	100, 576
XmiI	GTMKAC	1 cut(s)	217
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	3 cut(s)	62, 122, 242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.