Rorug02G0119300

plant-type hypersensitive response

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014069
Physical Location & Seq
Reverse (-)
10207835 .. 10208518
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0119300.1

Sequence Viewer

Length: 684 bp
ATGTTGTCATCAACTGGTAGTGAAGAAAGCAACTACAACTCATCTTCCTGGTCTTCCCCCACCACAACACCCGCTTCTCCATTCTCGCAGGCAACCCCAAGAAGAACCATGGAGGAGGTCTGGAAGGACATCAACCTCGCCTCGCTTTCGGACTCCAACAACTCACTCAACAACAATCCCAACTTCAGAAACATGACCCTCCAGGACTTTCTGGCAAGGCCCTTTGGCAATGTGGTCTCTCCCAGACCCGATCACCACCACCATCACCACACCACTCGCAACTCTCCTCCTCCTCCTCCTCCTCAAGCTGTGATGCCGAGCCCAGCTACTGTTCTGAGCTTGAATCATTTGAGCTCGGACCAGTTTCAGCTCTTCTGTATTGAGAATCTCAACACTAGGCCTATTGTTAACATCAACCACCCCAATAGTAGTACTGTTTCTGATAACTCTTTCAGTGGTGCTTACCCATTTGAGGGTCTCGGAAACCAATCTTCTCCTTCTTCTGGGTTGGTTATGCCGTCGGGTTTTGGGGTCGGGAAGAAGAGGTTACCGGAATCTGATCGTAGCAACTTCGGAGGAGGAGATCGGAGACACAAGCGGATGATCAAGAATAGAGAATCTGCTGCAAGATCCAGAGCAAGGAAGCAGGAATATTGCTGTCCCTATAATTCTCCAAAGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RPW8

Protein Analysis

227

Amino Acids

25.13

Weight (kDa)

9.47

Isoelectric Point (pI)

78.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 196 - 219 2.2e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014069)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50450 AT3G50460 AT3G50470 AT3G50480 AT3G50480
malus_domestica MD02G1163800.v1.1
prunus_persica Prupe.7G140100_v2.0.a1
rosa_laevigata RLG00000017290
rosa_multiflora Rmu_ssc0000257.1_g000011
rosa_roxburghii Rroxscaffold_2G00139110
rosa_rugosa Rorug02G0119300
rosa_samantha Rh2AG168800 Rh2BG176000 Rh2CG174400 Rh2DG174300 Rh6DG281400
rosa_wichuraiana Rw2G013210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 72, 598
AclWI GGATC 1 cut(s) 624
AcuI CTGAAG 1 cut(s) 169
AfaI GTAC 2 cut(s) 433, 680
AfiI CCNNNNNNNGG 4 cut(s) 472, 473, 503, 639
AgsI TTSAA 1 cut(s) 343
AjnI CCWGG 2 cut(s) 47, 201
AluBI AGCT 5 cut(s) 308, 326, 339, 354, 370
AluI AGCT 5 cut(s) 308, 326, 339, 354, 370
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 3 cut(s) 241, 482, 583
AlwI GGATC 1 cut(s) 624
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 218, 398
ApeKI GCWGC 1 cut(s) 623
AspS9I GGNCC 2 cut(s) 219, 358
AsuHPI GGTGA 2 cut(s) 245, 257
AvaII GGWCC 1 cut(s) 358
BanII GRGCYC 2 cut(s) 323, 356
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 610
BccI CCATC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 502
BciT130I CCWGG 2 cut(s) 49, 203
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 3 cut(s) 241, 482, 583
BfaI CTAG 1 cut(s) 396
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 2 cut(s) 433, 680
Bme1390I CCNGG 2 cut(s) 49, 203
Bme18I GGWCC 1 cut(s) 358
BmgT120I GGNCC 2 cut(s) 219, 358
BmrFI CCNGG 2 cut(s) 49, 203
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 288
BsaI GGTCTC 2 cut(s) 241, 482
BsaJI CCNNGG 1 cut(s) 108
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 473, 503, 639
Bse1I ACTGG 2 cut(s) 19, 361
Bse3DI GCAATG 1 cut(s) 235
BseBI CCWGG 2 cut(s) 49, 203
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 472, 473, 503, 639
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 19, 361
BseRI GAGGAG 9 cut(s) 128, 276, 279, 282, 285, 288, 291, 591, 594
BseXI GCAGC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 322
BshFI GGCC 2 cut(s) 220, 400
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 4 cut(s) 472, 473, 503, 639
BsmAI GTCTC 3 cut(s) 241, 482, 583
BsmFI GGGAC 1 cut(s) 645
BsnI GGCC 2 cut(s) 220, 400
Bso31I GGTCTC 2 cut(s) 241, 482
Bsp1286I GDGCHC 2 cut(s) 323, 356
Bsp143I GATC 5 cut(s) 250, 559, 583, 603, 629
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 72, 598
BspANI GGCC 2 cut(s) 220, 400
BspCNI CTCAG 1 cut(s) 327
BspPI GGATC 1 cut(s) 624
BspQI GCTCTTC 1 cut(s) 377
BspTNI GGTCTC 2 cut(s) 241, 482
BsrDI GCAATG 1 cut(s) 235
BsrI ACTGG 2 cut(s) 19, 361
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 5 cut(s) 250, 559, 583, 603, 629
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 2 cut(s) 49, 203
Bst4CI ACNGT 2 cut(s) 331, 436
Bst6I CTCTTC 2 cut(s) 377, 536
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 108
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 1 cut(s) 606
BstKTI GATC 5 cut(s) 253, 562, 586, 606, 632
BstMAI GTCTC 3 cut(s) 241, 482, 583
BstMBI GATC 5 cut(s) 250, 559, 583, 603, 629
BstNI CCWGG 2 cut(s) 49, 203
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 2 cut(s) 47, 201
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 2 cut(s) 220, 400
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 90
CaiI CAGNNNCTG 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 219, 358
Csp6I GTAC 2 cut(s) 432, 679
CviAII CATG 2 cut(s) 109, 193
CviJI RGCY 8 cut(s) 220, 308, 321, 326, 339, 354, 370, 400
CviKI_1 RGCY 8 cut(s) 220, 308, 321, 326, 339, 354, 370, 400
CviQI GTAC 2 cut(s) 432, 679
DdeI CTNAG 1 cut(s) 335
DpnI GATC 5 cut(s) 252, 561, 585, 605, 631
DpnII GATC 5 cut(s) 250, 559, 583, 603, 629
Eam1104I CTCTTC 2 cut(s) 377, 536
EarI CTCTTC 2 cut(s) 377, 536
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 400
Eco24I GRGCYC 2 cut(s) 323, 356
Eco31I GGTCTC 2 cut(s) 241, 482
Eco47I GGWCC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 354
Eco57I CTGAAG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 546
EcoICRI GAGCTC 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 219
EcoO65I GGTNACC 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 47, 201
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 323, 356
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 112, 196
FaiI YATR 4 cut(s) 110, 194, 515, 666
FaqI GGGAC 1 cut(s) 645
FatI CATG 2 cut(s) 108, 192
FauI CCCGC 1 cut(s) 79
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 1 cut(s) 613
FriOI GRGCYC 2 cut(s) 323, 356
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 396
GluI GCNGC 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 326
GsuI CTGGAG 1 cut(s) 185
HaeIII GGCC 2 cut(s) 220, 400
HapII CCGG 1 cut(s) 551
Hin1II CATG 2 cut(s) 112, 196
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 5 cut(s) 152, 343, 385, 554, 617
HpaI GTTAAC 1 cut(s) 409
HpaII CCGG 1 cut(s) 551
HphI GGTGA 2 cut(s) 245, 257
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 9 cut(s) 151, 188, 336, 358, 442, 482, 559, 575, 588
Hpy188III TCNNGA 4 cut(s) 121, 535, 607, 633
Hpy8I GTNNAC 1 cut(s) 409
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 118, 507
HpyCH4III ACNGT 2 cut(s) 331, 436
HpyCH4V TGCA 1 cut(s) 626
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 112, 196
Ksp22I TGATCA 1 cut(s) 603
KspAI GTTAAC 1 cut(s) 409
Kzo9I GATC 5 cut(s) 250, 559, 583, 603, 629
LguI GCTCTTC 1 cut(s) 377
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 546
MalI GATC 5 cut(s) 252, 561, 585, 605, 631
MboI GATC 5 cut(s) 250, 559, 583, 603, 629
MboII GAAGA 9 cut(s) 35, 36, 45, 114, 364, 483, 492, 550, 553
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 2 cut(s) 323, 356
MluCI AATT 1 cut(s) 667
MlyI GAGTC 1 cut(s) 146
MmeI TCCRAC 1 cut(s) 180
MseI TTAA 1 cut(s) 408
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 2 cut(s) 49, 203
MvaI CCWGG 2 cut(s) 49, 203
NcoI CCATGG 1 cut(s) 108
NdeII GATC 5 cut(s) 250, 559, 583, 603, 629
NlaIII CATG 2 cut(s) 112, 196
NmeAIII GCCGAG 1 cut(s) 342
PceI AGGCCT 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 377
PfeI GAWTC 4 cut(s) 343, 385, 554, 617
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 47, 201
PspEI GGTNACC 1 cut(s) 546
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 2 cut(s) 47, 201
PspPI GGNCC 2 cut(s) 219, 358
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 2 cut(s) 433, 680
RsaNI GTAC 2 cut(s) 432, 679
SacI GAGCTC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 377
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 5 cut(s) 250, 559, 583, 603, 629
Sau96I GGNCC 2 cut(s) 219, 358
ScaI AGTACT 2 cut(s) 433, 680
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 2 cut(s) 49, 203
SduI GDGCHC 2 cut(s) 323, 356
SetI ASST 8 cut(s) 120, 138, 310, 328, 341, 356, 372, 548
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 358
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 1 cut(s) 667
SseBI AGGCCT 1 cut(s) 400
SsiI CCGC 2 cut(s) 72, 598
SspI AATATT 1 cut(s) 653
SspMI CTAG 1 cut(s) 396
SstI GAGCTC 1 cut(s) 356
StuI AGGCCT 1 cut(s) 400
StyD4I CCNGG 2 cut(s) 47, 201
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 331, 436
TasI AATT 1 cut(s) 667
TatI WGTACW 2 cut(s) 431, 678
TfiI GAWTC 4 cut(s) 343, 385, 554, 617
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 623
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 358
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 2 cut(s) 433, 680
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.