Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007886

Physical Location & Seq

Genomic Coordinates Forward (+)

15633533 .. 15637127

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G140800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAACTGTGAAGTTTGCCAGCTCAAAGAATTGGAAGTTGAGCACTTTGAGATACGGGAAGTTCTGCGCTGCATACTTCACACAATAGTGTTTCATCGGGCTTTAGGTCTTGTGCGGCCCAAAGACGTTGATTTGGAACTTTTTGAAATTACATATGTTCAATGTGGTGATATGGAACTTGAGAAGAAAATAGATGAGAAGATTGAGCAATTCATTAGTTGGGTAGAAAAACACCCAAACAAGAAAAGTCAGATCTGCTTGTCTTTCTTTGAAGTAAAAAACAAACAGGCAAAATGGTTCACTCCTAAAACAGAAAGGCTACAGTGGGAACAGTGGTATATTAATTTGAATGTGGCCCAACACCCCAAAGCACATTCTGGCAAATCTCATAATTCTAAAGTCGTAATTGATCCAGGAGAGAGTGCATTGGAAGAGAGAATGGCTCGCAGAGCCGTGCTTGAAGCATCTCTTCATGAAGTTTTGTTCCAAATAATAAAATTTGTGAATGAAAAGAAAGATCATGTTCCCCCTATACCGAATCTTGAGGGTGTAGTCTGGTTTCCCCATGAAATTACTATCCCAAGTTCCTCGGATTCTGCATTTGGAATGGACATGATCAAAAGGATGCTGCAGACTGGCCATCCAACCATGCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04136 ko04140 ko04211 map04136 map04140 map04211

Pfam Domains

Protein Families

ATG101

Protein Analysis

220

Amino Acids

25.58

Weight (kDa)

6.27

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66930 AT5G66930 AT5G66930
fragaria_vesca	FvH4_1g14960 FvH4_1g14960 FvH4_1g14960
malus_domestica	MD02G1163200.v1.1 MD15G1276200.v1.1
prunus_persica	Prupe.7G140800_v2.0.a1 Prupe.7G140800_v2.0.a1
pyrus_communis	pycom02g12940 pycom15g23930
rosa_chinensis	RchiOBHm_Chr2g0104011
rosa_laevigata	RLG00000017277
rosa_multiflora	Rmu_sc0001720.1_g000010
rosa_roxburghii	Rroxscaffold_2G00139210
rosa_rugosa	Rorug02G0118400 Rorug02G0118500 Rorug02G0118600
rosa_samantha	Rh2AG167900 Rh2BG174900 Rh2CG173700 Rh2DG173400
rosa_wichuraiana	Rw2G013130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	115
AclWI	GGATC	1 cut(s)	404
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	1 cut(s)	497
AgsI	TTSAA	5 cut(s)	146, 161, 272, 349, 461
AjnI	CCWGG	1 cut(s)	412
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	2 cut(s)	22, 657
AluI	AGCT	2 cut(s)	22, 657
Alw21I	GWGCWC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	3 cut(s)	116, 354, 637
ApeKI	GCWGC	2 cut(s)	69, 628
ApoI	RAATTY	1 cut(s)	497
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	117, 355
AsuHPI	GGTGA	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	639
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	56, 615
BccI	CCATC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	437
BciT130I	CCWGG	1 cut(s)	414
BclI	TGATCA	1 cut(s)	615
BfmI	CTRYAG	2 cut(s)	320, 629
BglII	AGATCT	1 cut(s)	252
BisI	GCNGC	3 cut(s)	70, 116, 629
BlpI	GCTNAGC	1 cut(s)	653
BlsI	GCNGC	3 cut(s)	71, 117, 630
Bme1390I	CCNGG	1 cut(s)	414
BmgT120I	GGNCC	2 cut(s)	117, 355
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	2 cut(s)	473, 615
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu1102I	GCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	2 cut(s)	200, 563
BsaJI	CCNNGG	1 cut(s)	588
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	588
BseGI	GGATG	2 cut(s)	630, 640
BseNI	ACTGG	1 cut(s)	640
BseXI	GCAGC	2 cut(s)	56, 615
BshFI	GGCC	3 cut(s)	118, 356, 639
BsiHKAI	GWGCWC	1 cut(s)	45
BsnI	GGCC	3 cut(s)	118, 356, 639
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	4 cut(s)	252, 409, 517, 615
Bsp1720I	GCTNAGC	1 cut(s)	653
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	3 cut(s)	118, 356, 639
BspHI	TCATGA	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	640
BssECI	CCNNGG	1 cut(s)	588
BssMI	GATC	4 cut(s)	252, 409, 517, 615
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	3 cut(s)	8, 324, 333
Bst6I	CTCTTC	2 cut(s)	426, 474
BstC8I	GCNNGC	2 cut(s)	20, 445
BstDEI	CTNAG	1 cut(s)	653
BstF5I	GGATG	2 cut(s)	630, 640
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	255, 412, 520, 618
BstMBI	GATC	4 cut(s)	252, 409, 517, 615
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	2 cut(s)	320, 629
BstV1I	GCAGC	2 cut(s)	56, 615
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	3 cut(s)	118, 356, 639
BtsCI	GGATG	2 cut(s)	630, 640
BtsIMutI	CAGTG	2 cut(s)	329, 338
Cac8I	GCNNGC	2 cut(s)	20, 445
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	117, 355
CviAII	CATG	5 cut(s)	473, 521, 566, 613, 649
CviJI	RGCY	9 cut(s)	22, 101, 118, 319, 356, 443, 452, 639, 657
CviKI_1	RGCY	9 cut(s)	22, 101, 118, 319, 356, 443, 452, 639, 657
DdeI	CTNAG	1 cut(s)	653
DpnI	GATC	4 cut(s)	254, 411, 519, 617
DpnII	GATC	4 cut(s)	252, 409, 517, 615
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	2 cut(s)	426, 474
EarI	CTCTTC	2 cut(s)	426, 474
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	5 cut(s)	476, 524, 569, 616, 652
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FatI	CATG	5 cut(s)	472, 520, 565, 612, 648
FauNDI	CATATG	1 cut(s)	154
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	70, 116, 629
FokI	GGATG	2 cut(s)	627, 637
Fsp4HI	GCNGC	3 cut(s)	70, 116, 629
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	3 cut(s)	70, 116, 629
HaeIII	GGCC	3 cut(s)	118, 356, 639
HhaI	GCGC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	476, 524, 569, 616, 652
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	538, 593
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	252, 592
Hpy188III	TCNNGA	2 cut(s)	473, 542
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4III	ACNGT	3 cut(s)	8, 324, 333
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	4 cut(s)	72, 425, 599, 631
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	653
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	5 cut(s)	476, 524, 569, 616, 652
HspAI	GCGC	1 cut(s)	67
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	4 cut(s)	252, 409, 517, 615
LpnPI	CCDG	7 cut(s)	32, 272, 363, 399, 426, 541, 621
Lsp1109I	GCAGC	2 cut(s)	56, 615
LweI	GCATC	2 cut(s)	473, 615
MaeII	ACGT	1 cut(s)	126
MalI	GATC	4 cut(s)	254, 411, 519, 617
MboI	GATC	4 cut(s)	252, 409, 517, 615
MboII	GAAGA	4 cut(s)	196, 211, 443, 461
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	8 cut(s)	29, 147, 209, 343, 391, 405, 497, 570
MluNI	TGGCCA	1 cut(s)	639
MnlI	CCTC	2 cut(s)	538, 598
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	639
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	449
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	4 cut(s)	252, 409, 517, 615
NlaIII	CATG	5 cut(s)	476, 524, 569, 616, 652
OliI	CACNNNNGTG	1 cut(s)	86
PagI	TCATGA	1 cut(s)	472
PfeI	GAWTC	2 cut(s)	538, 593
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	71, 117, 630
PshBI	ATTAAT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
PspPI	GGNCC	2 cut(s)	117, 355
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	70, 116, 629
Sau3AI	GATC	4 cut(s)	252, 409, 517, 615
Sau96I	GGNCC	2 cut(s)	117, 355
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	4 cut(s)	24, 109, 129, 659
SfaNI	GCATC	2 cut(s)	473, 615
SfcI	CTRYAG	2 cut(s)	320, 629
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	179, 542
SmoI	CTYRAG	2 cut(s)	179, 542
Sse9I	AATT	8 cut(s)	29, 147, 209, 343, 391, 405, 497, 570
SsiI	CCGC	1 cut(s)	115
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	8, 324, 333
TaiI	ACGT	1 cut(s)	129
TasI	AATT	8 cut(s)	29, 147, 209, 343, 391, 405, 497, 570
TauI	GCSGC	1 cut(s)	118
TfiI	GAWTC	2 cut(s)	538, 593
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	2 cut(s)	329, 338
TseI	GCWGC	2 cut(s)	69, 628
TspDTI	ATGAA	7 cut(s)	17, 83, 202, 461, 489, 522, 582
TspRI	CASTG	2 cut(s)	329, 338
VspI	ATTAAT	1 cut(s)	342
XapI	RAATTY	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.