pycom15g23930

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007886
Physical Location & Seq
Reverse (-)
18048200 .. 18050658
2459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g23930.1

Sequence Viewer

Length: 723 bp
ATGAATCATACCCCATTTATCAAAGAGTGCAGTCGAAGACTTAGATTACTTAAACTTATCACGAACGCACACTCCAATCAAAAACGTTACCGCGAAACTCAAGTTCCTAGCAGAAAGTGGAAAGATAGGGTTCGTAAGCGCTCTGAATCCCAATTCACTGCCATCGCCGAACGCACCATGAACTGTGAAGTTTGCCAGCTCAAAGAATTGGAAGTCGAGCATTTTGAGATACGGGAAGTTCTGCGCTGCATACTTCACACAATTGTGTTTCATCGGGCATTAGGTCTTGTGCGGCCCAAGGATATTGATTTGGAACTTTTCGAAATTACATATGTGCAATGTGGAGATGTTGAACTTGAGAAGAAAATAGATGAGAAGATTGGGCAATTCATTAGTTGGGTAGAGAAACACCCAAACAAGAAAAGTCAGATCTGCTTGTCTTTCTTTGAACTGAAAAACAAACAGGCAACTTGGTTTACACACAAAACAGAAAGGTTATACTGGGAACAATGGTATATAAATTTGAATGTGGCCCAACACCCCAAAGCACATTCTGGCAATTCTCATAATTCTAAAGTTGTAGGTGATCCAGGAGAGAGTGCATTGGACGAGAGAATGGCTCGCAGAGCAGCACTTGAAGCATCTCTTCGTGAGGTTTTGTTCCAAATAATAAAATTTGTGAATGAGAAGAAATTGATCATGTTCCAAATATTGAGGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04136 ko04140 ko04211 map04136 map04140 map04211
Pfam Domains
Protein Families
ATG101

Protein Analysis

241

Amino Acids

28.56

Weight (kDa)

9.44

Isoelectric Point (pI)

31.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG101 PF07855 69 - 231 1.4e-49 Autophagy-related protein 101
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 292
AclI AACGTT 1 cut(s) 85
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 2 cut(s) 520, 674
AfeI AGCGCT 1 cut(s) 140
AgsI TTSAA 4 cut(s) 353, 449, 526, 638
AjnI CCWGG 1 cut(s) 589
AleI CACNNNNGTG 1 cut(s) 263
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 1 cut(s) 581
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 293, 531
ApeKI GCWGC 2 cut(s) 246, 629
ApoI RAATTY 2 cut(s) 520, 674
AspLEI GCGC 2 cut(s) 141, 246
AspS9I GGNCC 2 cut(s) 294, 532
AsuHPI GGTGA 1 cut(s) 596
AsuII TTCGAA 1 cut(s) 321
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 233, 641
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 696
BfaI CTAG 1 cut(s) 108
BfoI RGCGCY 1 cut(s) 142
BglII AGATCT 1 cut(s) 429
BisI GCNGC 3 cut(s) 247, 293, 630
BlsI GCNGC 3 cut(s) 248, 294, 631
Bme1390I CCNGG 1 cut(s) 591
BmgT120I GGNCC 2 cut(s) 294, 532
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 511
BmsI GCATC 1 cut(s) 650
BmuI ACTGGG 1 cut(s) 511
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 604, 636
Bpu14I TTCGAA 1 cut(s) 321
BpuEI CTTGAG 2 cut(s) 84, 377
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bse1I ACTGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 1 cut(s) 297
BseMI GCAATG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 506
BseXI GCAGC 2 cut(s) 233, 641
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 295, 533
BsnI GGCC 2 cut(s) 295, 533
Bsp119I TTCGAA 1 cut(s) 321
Bsp143I GATC 3 cut(s) 429, 586, 696
BspACI CCGC 2 cut(s) 91, 292
BspANI GGCC 2 cut(s) 295, 533
BspFNI CGCG 1 cut(s) 93
BspPI GGATC 1 cut(s) 581
BspT104I TTCGAA 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 344
BsrI ACTGG 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 429, 586, 696
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 651
BstBI TTCGAA 1 cut(s) 321
BstC8I GCNNGC 2 cut(s) 197, 622
BstDEI CTNAG 1 cut(s) 41
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 2 cut(s) 141, 246
BstKTI GATC 3 cut(s) 432, 589, 699
BstMBI GATC 3 cut(s) 429, 586, 696
BstMWI GCNNNNNNNGC 2 cut(s) 626, 638
BstNI CCWGG 1 cut(s) 591
BstSCI CCNGG 1 cut(s) 589
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 233, 641
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 2 cut(s) 295, 533
BtgZI GCGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 197, 622
CfoI GCGC 2 cut(s) 141, 246
Cfr13I GGNCC 2 cut(s) 294, 532
CviAII CATG 2 cut(s) 178, 700
CviJI RGCY 4 cut(s) 199, 295, 533, 620
CviKI_1 RGCY 4 cut(s) 199, 295, 533, 620
DdeI CTNAG 1 cut(s) 41
DpnI GATC 3 cut(s) 431, 588, 698
DpnII GATC 3 cut(s) 429, 586, 696
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 297
Eco47III AGCGCT 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 181, 703
FalI AAGNNNNNCTT 2 cut(s) 630, 662
FatI CATG 2 cut(s) 177, 699
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 247, 293, 630
Fsp4HI GCNGC 3 cut(s) 247, 293, 630
FspBI CTAG 1 cut(s) 108
GlaI GCGC 2 cut(s) 140, 245
GluI GCNGC 3 cut(s) 247, 293, 630
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 295, 533
HhaI GCGC 2 cut(s) 141, 246
Hin1II CATG 2 cut(s) 181, 703
Hin6I GCGC 2 cut(s) 139, 244
HinP1I GCGC 2 cut(s) 139, 244
HinfI GANTC 2 cut(s) 4, 146
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 1 cut(s) 477
Hpy188I TCNGA 2 cut(s) 145, 429
Hpy188III TCNNGA 2 cut(s) 61, 650
Hpy8I GTNNAC 1 cut(s) 477
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 4 cut(s) 30, 249, 337, 602
HpyF10VI GCNNNNNNNGC 2 cut(s) 626, 638
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 181, 703
HspAI GCGC 2 cut(s) 139, 244
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 3 cut(s) 429, 586, 696
LpnPI CCDG 6 cut(s) 209, 449, 487, 540, 576, 603
Lsp1109I GCAGC 2 cut(s) 233, 641
LweI GCATC 1 cut(s) 650
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 86
MalI GATC 3 cut(s) 431, 588, 698
MboI GATC 3 cut(s) 429, 586, 696
MboII GAAGA 5 cut(s) 48, 373, 388, 638, 700
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 1 cut(s) 429
MnlI CCTC 2 cut(s) 646, 708
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 591
MunI CAATTG 1 cut(s) 261
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 626, 638
NdeI CATATG 1 cut(s) 331
NdeII GATC 3 cut(s) 429, 586, 696
NlaIII CATG 2 cut(s) 181, 703
NspV TTCGAA 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 263
PfeI GAWTC 2 cut(s) 4, 146
PfoI TCCNGGA 1 cut(s) 589
PkrI GCNGC 3 cut(s) 248, 294, 631
Psp1406I AACGTT 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PspPI GGNCC 2 cut(s) 294, 532
PsuI RGATCY 1 cut(s) 429
RseI CAYNNNNRTG 1 cut(s) 263
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 247, 293, 630
Sau3AI GATC 3 cut(s) 429, 586, 696
Sau96I GGNCC 2 cut(s) 294, 532
ScrFI CCNGG 1 cut(s) 591
SetI ASST 6 cut(s) 88, 201, 286, 497, 586, 657
SfaNI GCATC 1 cut(s) 650
SfuI TTCGAA 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 2 cut(s) 99, 356
SmoI CTYRAG 2 cut(s) 99, 356
SsiI CCGC 2 cut(s) 91, 292
SspI AATATT 1 cut(s) 711
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 185
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 34, 216, 321
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 2 cut(s) 4, 146
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 246, 629
TspDTI ATGAA 4 cut(s) 17, 194, 260, 379
TspRI CASTG 1 cut(s) 163
XapI RAATTY 2 cut(s) 520, 674
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.