Rorug02G0118500

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007886
Physical Location & Seq
Forward (+)
10121114 .. 10164000
42887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0118500.1

Sequence Viewer

Length: 1428 bp
ATGGCCGACTGGACTTGCAGAGCTTCTAGTATCAACTCTACTCTCTTGCCTCTGTTACTGGTTTTCGTATTGGGTTTGGCTTGTCGGAGCTGTAACGGGTTCGGGGCGTTCGAGTTTGATTTCTACCACCGGTTGTCGGATCCCGTCACCGGAATTCTCGGCTACGATGAGCTCCCGCAAAAGGGTAGCCCTGAATATTACGCTACCATGACTCACCGGGACCGGTTGATCCGGGGCCGCCACCTCGGCGAAACGACGACGCCGCTTACTTTCGTTTACGGCAACGATACTTACCGGATTGGCGCTTTTGGACACTTGCATTATGCGAATGTTTCTGTTGGGACTCCAAGGACTTCGTATCTTGTGGCTTTGGATACTGGCAGTGATTTATTGTGGTTGCCGTGTGATTGTATCAGTTGTGTGAAGGGAGTTAATACATCCGATGGAGAGGTGGTGGATTTTGACATCTACAGCCCTAATAAATCAACAACAAGCAAAAAGGTTCCTTGCAACAGCACATATTGCGAACAACAACAGCTGTGCTCTTCACCAAGTAGTGATTGTCCTTATTTTATTAACTATCTTTCTCCTAGCACTTCATCTTCTGGAATCGTAGTAGAGGACGTTTTGCACTTGACTACTGATGATGCTAAACTAAAAGGTGTCGAGGCGCCGATAGCCTTTGGGTGTGGTAGGTATCAGACTGGTATATTTTTAAGTGGGGCAGCTCCCAATGGTTTATTAGGGCTTGGTATGGATGGTGTATCCATTCCTAGCATGTTAGCAAAACAGGGGCTTGCTTCAGATTCTTTTTCCATGTGTTTTGGAATTGATGGAGGTGGGAGAATTAGATTTGGTGATAATGGAAGTGTAGGCCAACCAGAAACACCATTCTATGTCAGAGATATCCATCCAACTTACAACATTACGGTTACTCAAATAGCCGTTGGAAAAAGTGTTGCTGATCTTGAATTCTATGCAATTTGGGACTCTGGTACCTCATTTACGTACCTAAATGATCCAGCTTACACCCAGATTTCCAAGAGTTTCAACAGCGCCATCAAAGATAAGCGGGTGACAGATAATTCTGATCTTCCTTTTGAATATTGTTATACAGTCAGTCCAAATCAAACGTTGAATTTGACAATGAAAGGCGGAAAGCATTATAATGTTATTGATCCACTTGTAGTTTTTTCTGATGGGGAAGGAAATATACTGCTCTATTGTCTGGGCGTTGTCAAAAGTGAAGATGTAAATATCATTGGACAAAACTTCATGACCGGTTACCGTATAATCTTTGATCGCGAGAAGATGGTACTGGGTTGGACAGAGTCAGATTGTTACAATGATGAGGAAACCTCAACTGTTCCCATCAGTCCATCCGCATCTCCCTCCTCATCCAAATGTCCGGCCGCATCCCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04136 ko04140 ko04211 map04136 map04140 map04211
Pfam Domains
Protein Families
ATG101

Protein Analysis

475

Amino Acids

51.64

Weight (kDa)

4.84

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 108 - 287 2.6e-35 Xylanase inhibitor N-terminal
Asp PF00026 108 - 441 1e-22 Eukaryotic aspartyl protease
TAXi_C PF14541 307 - 443 1.8e-13 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1167
Acc65I GGTACC 1 cut(s) 995
AccB1I GGYRCC 2 cut(s) 670, 995
AccII CGCG 1 cut(s) 1305
AciI CCGC 7 cut(s) 176, 238, 263, 1072, 1155, 1383, 1413
AclI AACGTT 1 cut(s) 1133
AclWI GGATC 5 cut(s) 134, 147, 223, 1013, 1172
AcoI YGGCCR 2 cut(s) 3, 1410
AcsI RAATTY 3 cut(s) 153, 971, 1138
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 2 cut(s) 260, 671
AfaI GTAC 3 cut(s) 997, 1010, 1317
AfiI CCNNNNNNNGG 4 cut(s) 136, 149, 181, 182
AgeI ACCGGT 3 cut(s) 129, 222, 1280
AgsI TTSAA 4 cut(s) 971, 1051, 1103, 1138
AluBI AGCT 6 cut(s) 23, 90, 172, 538, 728, 1025
AluI AGCT 6 cut(s) 23, 90, 172, 538, 728, 1025
Alw21I GWGCWC 2 cut(s) 174, 545
AlwI GGATC 5 cut(s) 134, 147, 223, 1013, 1172
AoxI GGCC 4 cut(s) 3, 235, 874, 1410
ApeKI GCWGC 1 cut(s) 725
ApoI RAATTY 3 cut(s) 153, 971, 1138
AsiGI ACCGGT 3 cut(s) 129, 222, 1280
Asp718I GGTACC 1 cut(s) 995
AspLEI GCGC 3 cut(s) 305, 673, 1058
AspS9I GGNCC 2 cut(s) 220, 235
AsuC2I CCSGG 2 cut(s) 218, 233
AsuHPI GGTGA 5 cut(s) 139, 206, 540, 869, 1087
AvaII GGWCC 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 979, 1012
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 670, 995
BanII GRGCYC 1 cut(s) 174
BarI GAAGNNNNNNTAC 2 cut(s) 1197, 1229
Bbv12I GWGCWC 2 cut(s) 174, 545
BbvI GCAGC 1 cut(s) 737
BccI CCATC 9 cut(s) 437, 752, 827, 918, 1067, 1193, 1306, 1379, 1387
BceAI ACGGC 3 cut(s) 295, 385, 929
BciVI GTATCC 2 cut(s) 367, 775
BcnI CCSGG 2 cut(s) 218, 233
BfaI CTAG 3 cut(s) 27, 591, 774
BfmI CTRYAG 1 cut(s) 469
BfoI RGCGCY 3 cut(s) 306, 674, 1059
BfuI GTATCC 2 cut(s) 367, 775
BglI GCCNNNNNGGC 1 cut(s) 246
BisI GCNGC 4 cut(s) 238, 263, 726, 1413
BlsI GCNGC 4 cut(s) 239, 264, 727, 1414
Bme1390I CCNGG 2 cut(s) 218, 233
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 2 cut(s) 220, 235
BmiI GGNNCC 6 cut(s) 141, 221, 236, 504, 672, 997
BmrFI CCNGG 2 cut(s) 218, 233
BmrI ACTGGG 1 cut(s) 1328
BmsI GCATC 3 cut(s) 637, 1394, 1424
BmuI ACTGGG 1 cut(s) 1328
BplI GAGNNNNNCTC 2 cut(s) 1343, 1375
BpuMI CCSGG 2 cut(s) 218, 233
BsaAI YACGTR 1 cut(s) 1008
BsaBI GATNNNNATC 1 cut(s) 909
BsaHI GRCGYC 2 cut(s) 260, 671
BsaJI CCNNGG 3 cut(s) 232, 244, 347
BsaWI WCCGGW 5 cut(s) 129, 149, 222, 294, 1280
BsaXI ACNNNNNCTCC 2 cut(s) 438, 468
Bsc4I CCNNNNNNNGG 4 cut(s) 136, 149, 181, 182
Bse118I RCCGGY 3 cut(s) 129, 222, 1280
Bse1I ACTGG 5 cut(s) 14, 63, 382, 709, 1323
Bse8I GATNNNNATC 1 cut(s) 909
BseDI CCNNGG 3 cut(s) 232, 244, 347
BseGI GGATG 6 cut(s) 437, 763, 910, 1379, 1397, 1415
BseJI GATNNNNATC 1 cut(s) 909
BseLI CCNNNNNNNGG 4 cut(s) 136, 149, 181, 182
BseNI ACTGG 5 cut(s) 14, 63, 382, 709, 1323
BseRI GAGGAG 1 cut(s) 1384
BseX3I CGGCCG 1 cut(s) 1410
BseXI GCAGC 1 cut(s) 737
Bsh1236I CGCG 1 cut(s) 1305
Bsh1285I CGRYCG 1 cut(s) 1413
BshFI GGCC 4 cut(s) 5, 237, 876, 1412
BshNI GGYRCC 2 cut(s) 670, 995
BshTI ACCGGT 3 cut(s) 129, 222, 1280
BsiEI CGRYCG 1 cut(s) 1413
BsiHKAI GWGCWC 2 cut(s) 174, 545
BsiSI CCGG 8 cut(s) 130, 150, 217, 223, 232, 295, 1281, 1409
BslFI GGGAC 3 cut(s) 233, 355, 1001
BslI CCNNNNNNNGG 4 cut(s) 136, 149, 181, 182
BsmFI GGGAC 3 cut(s) 233, 355, 1001
BsnI GGCC 4 cut(s) 5, 237, 876, 1412
Bsp1286I GDGCHC 2 cut(s) 174, 545
Bsp143I GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
Bsp68I TCGCGA 1 cut(s) 1305
BspACI CCGC 7 cut(s) 176, 238, 263, 1072, 1155, 1383, 1413
BspANI GGCC 4 cut(s) 5, 237, 876, 1412
BspFNI CGCG 1 cut(s) 1305
BspHI TCATGA 1 cut(s) 1275
BspLI GGNNCC 6 cut(s) 141, 221, 236, 504, 672, 997
BspPI GGATC 5 cut(s) 134, 147, 223, 1013, 1172
BspQI GCTCTTC 1 cut(s) 550
BspT107I GGYRCC 2 cut(s) 670, 995
BsrFI RCCGGY 3 cut(s) 129, 222, 1280
BsrI ACTGG 5 cut(s) 14, 63, 382, 709, 1323
BssAI RCCGGY 3 cut(s) 129, 222, 1280
BssECI CCNNGG 3 cut(s) 232, 244, 347
BssMI GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
BssNI GRCGYC 2 cut(s) 260, 671
BssT1I CCWWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 931, 1117, 1289, 1366
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 2 cut(s) 260, 671
BstAPI GCANNNNNTGC 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 1008
BstC8I GCNNGC 1 cut(s) 798
BstEII GGTNACC 1 cut(s) 1283
BstF5I GGATG 6 cut(s) 437, 763, 910, 1379, 1397, 1415
BstFNI CGCG 1 cut(s) 1305
BstH2I RGCGCY 3 cut(s) 306, 674, 1059
BstHHI GCGC 3 cut(s) 305, 673, 1058
BstKTI GATC 7 cut(s) 142, 231, 967, 1021, 1093, 1180, 1303
BstMBI GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
BstMCI CGRYCG 1 cut(s) 1413
BstMWI GCNNNNNNNGC 3 cut(s) 246, 522, 677
BstNSI RCATGY 1 cut(s) 781
BstPI GGTNACC 1 cut(s) 1283
BstSCI CCNGG 2 cut(s) 216, 231
BstSFI CTRYAG 1 cut(s) 469
BstSNI TACGTA 1 cut(s) 1008
BstUI CGCG 1 cut(s) 1305
BstV1I GCAGC 1 cut(s) 737
BstX2I RGATCY 1 cut(s) 139
BstYI RGATCY 1 cut(s) 139
BstZI CGGCCG 1 cut(s) 1410
BsuI GTATCC 2 cut(s) 367, 775
BsuRI GGCC 4 cut(s) 5, 237, 876, 1412
BtsCI GGATG 6 cut(s) 437, 763, 910, 1379, 1397, 1415
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
BtuMI TCGCGA 1 cut(s) 1305
Cac8I GCNNGC 1 cut(s) 798
CciI TCATGA 1 cut(s) 1275
CfoI GCGC 3 cut(s) 305, 673, 1058
Cfr10I RCCGGY 3 cut(s) 129, 222, 1280
Cfr13I GGNCC 2 cut(s) 220, 235
CseI GACGC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 996, 1009, 1316
CspAI ACCGGT 3 cut(s) 129, 222, 1280
CviAII CATG 4 cut(s) 208, 778, 817, 1276
CviQI GTAC 3 cut(s) 996, 1009, 1316
DinI GGCGCC 1 cut(s) 672
DpnI GATC 7 cut(s) 141, 230, 966, 1020, 1092, 1179, 1302
DpnII GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
EaeI YGGCCR 2 cut(s) 3, 1410
EagI CGGCCG 1 cut(s) 1410
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
EciI GGCGGA 1 cut(s) 1170
Ecl136II GAGCTC 1 cut(s) 172
EclXI CGGCCG 1 cut(s) 1410
Eco105I TACGTA 1 cut(s) 1008
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 1 cut(s) 220
Eco52I CGGCCG 1 cut(s) 1410
Eco53kI GAGCTC 1 cut(s) 172
Eco57I CTGAAG 1 cut(s) 786
Eco91I GGTNACC 1 cut(s) 1283
EcoICRI GAGCTC 1 cut(s) 172
EcoO65I GGTNACC 1 cut(s) 1283
EcoRI GAATTC 2 cut(s) 153, 971
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 672
EheI GGCGCC 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 4 cut(s) 211, 781, 820, 1279
FaqI GGGAC 3 cut(s) 233, 355, 1001
FatI CATG 4 cut(s) 207, 777, 816, 1275
FauI CCCGC 2 cut(s) 183, 1065
Fnu4HI GCNGC 4 cut(s) 238, 263, 726, 1413
FokI GGATG 6 cut(s) 424, 770, 897, 1366, 1384, 1402
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 238, 263, 726, 1413
FspBI CTAG 3 cut(s) 27, 591, 774
GlaI GCGC 3 cut(s) 304, 672, 1057
GluI GCNGC 4 cut(s) 238, 263, 726, 1413
HaeII RGCGCY 3 cut(s) 306, 674, 1059
HaeIII GGCC 4 cut(s) 5, 237, 876, 1412
HapII CCGG 8 cut(s) 130, 150, 217, 223, 232, 295, 1281, 1409
HgaI GACGC 1 cut(s) 268
HhaI GCGC 3 cut(s) 305, 673, 1058
Hin1I GRCGYC 2 cut(s) 260, 671
Hin1II CATG 4 cut(s) 211, 781, 820, 1279
Hin6I GCGC 3 cut(s) 303, 671, 1056
HinP1I GCGC 3 cut(s) 303, 671, 1056
HinfI GANTC 6 cut(s) 211, 343, 609, 806, 989, 1331
HpaII CCGG 8 cut(s) 130, 150, 217, 223, 232, 295, 1281, 1409
HphI GGTGA 5 cut(s) 139, 206, 540, 869, 1087
Hpy166II GTNNAC 1 cut(s) 277
Hpy188I TCNGA 9 cut(s) 87, 139, 442, 702, 805, 902, 1090, 1198, 1336
Hpy188III TCNNGA 4 cut(s) 606, 968, 1276, 1304
Hpy8I GTNNAC 1 cut(s) 277
Hpy99I CGWCG 2 cut(s) 259, 262
HpyAV CCTTC 2 cut(s) 418, 1199
HpyCH4III ACNGT 4 cut(s) 931, 1117, 1289, 1366
HpyCH4IV ACGT 3 cut(s) 624, 1007, 1133
HpyCH4V TGCA 5 cut(s) 18, 319, 510, 631, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 522, 677
HpySE526I ACGT 3 cut(s) 624, 1007, 1133
Hsp92I GRCGYC 2 cut(s) 260, 671
Hsp92II CATG 4 cut(s) 211, 781, 820, 1279
HspAI GCGC 3 cut(s) 303, 671, 1056
KasI GGCGCC 1 cut(s) 670
KpnI GGTACC 1 cut(s) 999
Kzo9I GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
LguI GCTCTTC 1 cut(s) 550
LmnI GCTCC 3 cut(s) 87, 177, 733
Lsp1109I GCAGC 1 cut(s) 737
LweI GCATC 3 cut(s) 637, 1394, 1424
MaeI CTAG 3 cut(s) 27, 591, 774
MaeII ACGT 3 cut(s) 624, 1007, 1133
MaeIII GTNAC 7 cut(s) 54, 92, 145, 931, 1075, 1283, 1340
MalI GATC 7 cut(s) 141, 230, 966, 1020, 1092, 1179, 1302
MboI GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
MboII GAAGA 5 cut(s) 537, 594, 1085, 1259, 1321
MflI RGATCY 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 174, 545
MluCI AATT 7 cut(s) 153, 828, 846, 971, 981, 1084, 1138
Mly113I GGCGCC 1 cut(s) 671
MlyI GAGTC 4 cut(s) 205, 337, 983, 1340
MmeI TCCRAC 5 cut(s) 65, 117, 928, 938, 1304
MseI TTAA 3 cut(s) 432, 576, 716
MslI CAYNNNNRTG 2 cut(s) 1167, 1402
MspA1I CMGCKG 1 cut(s) 538
MspI CCGG 8 cut(s) 130, 150, 217, 223, 232, 295, 1281, 1409
MspR9I CCNGG 2 cut(s) 218, 233
MvnI CGCG 1 cut(s) 1305
MwoI GCNNNNNNNGC 3 cut(s) 246, 522, 677
NarI GGCGCC 1 cut(s) 671
NciI CCSGG 2 cut(s) 218, 233
NdeII GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
NlaIII CATG 4 cut(s) 211, 781, 820, 1279
NlaIV GGNNCC 6 cut(s) 141, 221, 236, 504, 672, 997
NmeAIII GCCGAG 2 cut(s) 138, 225
NmuCI GTSAC 2 cut(s) 145, 1075
NruI TCGCGA 1 cut(s) 1305
NspI RCATGY 1 cut(s) 781
PagI TCATGA 1 cut(s) 1275
PciSI GCTCTTC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PfeI GAWTC 2 cut(s) 609, 806
PflFI GACNNNGTC 1 cut(s) 1330
PinAI ACCGGT 3 cut(s) 129, 222, 1280
PkrI GCNGC 4 cut(s) 239, 264, 727, 1414
PleI GAGTC 4 cut(s) 205, 337, 983, 1339
PluTI GGCGCC 1 cut(s) 674
PpsI GAGTC 4 cut(s) 205, 337, 983, 1339
Ppu21I YACGTR 1 cut(s) 1008
PsiI TTATAA 1 cut(s) 1167
Psp124BI GAGCTC 1 cut(s) 174
Psp1406I AACGTT 1 cut(s) 1133
PspEI GGTNACC 1 cut(s) 1283
PspN4I GGNNCC 6 cut(s) 141, 221, 236, 504, 672, 997
PspPI GGNCC 2 cut(s) 220, 235
PsuI RGATCY 1 cut(s) 139
PsyI GACNNNGTC 1 cut(s) 1330
PvuII CAGCTG 1 cut(s) 538
RruI TCGCGA 1 cut(s) 1305
RsaI GTAC 3 cut(s) 997, 1010, 1317
RsaNI GTAC 3 cut(s) 996, 1009, 1316
RseI CAYNNNNRTG 2 cut(s) 1167, 1402
SacI GAGCTC 1 cut(s) 174
SapI GCTCTTC 1 cut(s) 550
SaqAI TTAA 3 cut(s) 432, 576, 716
SatI GCNGC 4 cut(s) 238, 263, 726, 1413
Sau3AI GATC 7 cut(s) 139, 228, 964, 1018, 1090, 1177, 1300
Sau96I GGNCC 2 cut(s) 220, 235
SchI GAGTC 4 cut(s) 205, 337, 983, 1340
ScrFI CCNGG 2 cut(s) 218, 233
SduI GDGCHC 2 cut(s) 174, 545
SfaNI GCATC 3 cut(s) 637, 1394, 1424
SfcI CTRYAG 1 cut(s) 469
SfoI GGCGCC 1 cut(s) 672
SinI GGWCC 1 cut(s) 220
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1402
SnaBI TACGTA 1 cut(s) 1008
Sse9I AATT 7 cut(s) 153, 828, 846, 971, 981, 1084, 1138
SsiI CCGC 7 cut(s) 176, 238, 263, 1072, 1155, 1383, 1413
SspDI GGCGCC 1 cut(s) 670
SspI AATATT 2 cut(s) 197, 1106
SspMI CTAG 3 cut(s) 27, 591, 774
SstI GAGCTC 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 216, 231
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 4 cut(s) 931, 1117, 1289, 1366
TaiI ACGT 3 cut(s) 627, 1010, 1136
TaqI TCGA 2 cut(s) 111, 666
TasI AATT 7 cut(s) 153, 828, 846, 971, 981, 1084, 1138
TauI GCSGC 3 cut(s) 240, 265, 1415
TfiI GAWTC 2 cut(s) 609, 806
Tru1I TTAA 3 cut(s) 432, 576, 716
Tru9I TTAA 3 cut(s) 432, 576, 716
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 2 cut(s) 145, 1075
TseI GCWGC 1 cut(s) 725
Tsp45I GTSAC 2 cut(s) 145, 1075
TspDTI ATGAA 3 cut(s) 588, 1163, 1264
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 1330
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 3 cut(s) 153, 971, 1138
XceI RCATGY 1 cut(s) 781
XspI CTAG 3 cut(s) 27, 591, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.