Rorug02G0118400

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
10113889 .. 10117424
3536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0118400.1

Sequence Viewer

Length: 1548 bp
ATGCTTACTCTTCGTAAGCTCGCCTCCATCTCCCTCGTTTTCCCATCAATCTTCTTGACCCTTCTTCTTCTTCTTCTTCTTCCAAGCTGCGACGGCCGCGTCTTCAGCTTCGAGATGCACCACCGCTTCTCCGACCCCGTCAAGCAGTGGTCGGAGGCCGCCGGAAAGCTCTCTCCGGTTGCCGCCACCAACCTCCCCGAGAAGGGCAGCTTCGAGTACTACGCCGAACTCGCCAACCGCGACCGCCTCCTCCGCGGCCGCAAGCTCGTCGAGTCCTCCGACACCCTCGCTTTCTCCGACGGCAACTCCACTTTTCAGATCACCTCTTTGGGATATTTGCATTATACGACGGTGCAACTGGGGACGCCGGGAATGAAGTTTATGGTGGCGCTGGATACCGGGAGTGACCTGTTTTGGGTGCCTTGTGAAGGAACAGCTTATACTCCTAATTTTGAGGTCAGCAAATATGACCCGAAAGGGTCATCGACTAGCAAGAAAGTCCGTTGCAACAACAGGTTGTGTATGCAGCGTAATAAATGTCTGGGAGCATTCAACACTTGCCCTTATAGGGTCTCTTATGTCTCTGATGAAACTTCTACGTCTGGGATATTGGTAGAGGATGTTCTGCACTTAACAACAGAAGATAGTCATCATGAATATGTTGAGGCATACATTACCTTTGGTTGTGGCCAGGTGCAAAGTGGTTCATTCCTGGATATTGCTGCTCCTAATGGCTTGTTTGGTCTTGGTATGGAGAAGATATCTGTTCCTAGCATTTTATCCCGGGAAGGCTTTACCGCAGATTCCTTTTCCATGTGTTTTGGACATGATGGAGTTGGGAGAATCAATTTTGGTGACAAGGGGAGTCCTGACCAGGAAGAGACCCCATTTAATTATAACCCTTCACATCCAACCTACAACATCAGTGTAACTCAAATTAGAGTGGGGACAGATATTATGGACATTGATTTCACTGCTCTTTTTGATTCTGGGACTTCTTTCACATATTTGGATGACCCAACTTATACAAGGATTTCAGAGAGTTTCAATTCACAAGCTCGAGATAAGCGTCGTCCACCTGACTCAAGGATTCCATTTGAATATTGTTATGATATGAGTCCAGATGCAAATGCTAGTTGGATATCTGGTGTCAGTTTAACCATGAAAGGTGGAAGCCAGTTTGAAGTATACAATCCAATCATTGTTATCTCCACTCAGAGCGAGCTGGTCTATTGCCTGGCTGTTGTCAAGAGTTTGGAACTAAATATAATTGGACAGAGAAAAAGGTTTTGGGCTGGAAGAAGTTTGACTGCTATGACACTGAGGACCATCATACTTACTTGCCTTTTAAACCACGGTCCTACAATGTGCCTCCTGCTTTTGCTCATGGACTACGCAACCATTCTATTTCAGAATCAGCAAAAAAGACCAGCCAGACTTCAGCTGCTTCTCTGCCTTACTATAGTCATACTTCTCTTCAGACTTGTTTTCTATTCACCATCCTCCTCTTCCTCTTACCGTAACTGTGATATGACAATCCTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

57.56

Weight (kDa)

6.03

Isoelectric Point (pI)

42.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 115 - 286 1.6e-35 Xylanase inhibitor N-terminal
Asp PF00026 115 - 426 1.1e-17 Eukaryotic aspartyl protease
TAXi_C PF14541 306 - 425 2.5e-11 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 897
AasI GACNNNNNNGTC 1 cut(s) 98
AccB1I GGYRCC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 1188
AccII CGCG 3 cut(s) 99, 240, 255
AcoI YGGCCR 3 cut(s) 94, 256, 688
AcuI CTGAAG 3 cut(s) 88, 1424, 1462
AcyI GRCGYC 1 cut(s) 365
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
AgsI TTSAA 4 cut(s) 553, 1048, 1100, 1184
AjnI CCWGG 4 cut(s) 690, 711, 873, 1236
AjuI GAANNNNNNNTTGG 2 cut(s) 1273, 1305
Alw26I GTCTC 3 cut(s) 577, 586, 875
Ama87I CYCGRG 3 cut(s) 197, 783, 1059
AoxI GGCC 4 cut(s) 94, 156, 256, 688
ApeKI GCWGC 5 cut(s) 87, 207, 526, 722, 1444
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 1326, 1358
AsuC2I CCSGG 4 cut(s) 369, 400, 784, 785
AsuHPI GGTGA 3 cut(s) 313, 866, 1488
AvaI CYCGRG 3 cut(s) 197, 783, 1059
AvaII GGWCC 2 cut(s) 1326, 1358
BalI TGGCCA 1 cut(s) 690
BanI GGYRCC 1 cut(s) 418
BbsI GAAGAC 1 cut(s) 94
BbvI GCAGC 5 cut(s) 74, 219, 538, 709, 1431
BccI CCATC 5 cut(s) 35, 52, 824, 1337, 1507
BceAI ACGGC 2 cut(s) 109, 316
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 4 cut(s) 692, 713, 875, 1238
BciVI GTATCC 1 cut(s) 388
BcnI CCSGG 4 cut(s) 369, 400, 784, 785
BcoDI GTCTC 3 cut(s) 577, 586, 875
BfaI CTAG 4 cut(s) 489, 771, 1134, 1546
BfmI CTRYAG 1 cut(s) 1461
BfoI RGCGCY 1 cut(s) 392
BfuI GTATCC 1 cut(s) 388
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
Bme18I GGWCC 2 cut(s) 1326, 1358
BmeT110I CYCGRG 3 cut(s) 197, 783, 1059
BmgT120I GGNCC 2 cut(s) 1326, 1358
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 105, 1114
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 1069
BpuMI CCSGG 4 cut(s) 369, 400, 784, 785
BsaBI GATNNNNATC 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 365
BsaI GGTCTC 2 cut(s) 577, 875
BsaJI CCNNGG 3 cut(s) 253, 783, 1354
BsaWI WCCGGW 1 cut(s) 175
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 290, 320
Bsc4I CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
Bse1I ACTGG 2 cut(s) 363, 1177
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 4 cut(s) 692, 713, 875, 1238
BseDI CCNNGG 3 cut(s) 253, 783, 1354
BseGI GGATG 4 cut(s) 625, 907, 1018, 1499
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BseMII CTCAG 2 cut(s) 1229, 1313
BseNI ACTGG 2 cut(s) 363, 1177
BseRI GAGGAG 2 cut(s) 239, 1495
BseX3I CGGCCG 2 cut(s) 94, 256
BseXI GCAGC 5 cut(s) 74, 219, 538, 709, 1431
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 3 cut(s) 99, 240, 255
Bsh1285I CGRYCG 3 cut(s) 97, 244, 259
BshFI GGCC 4 cut(s) 96, 158, 258, 690
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 3 cut(s) 97, 244, 259
BsiHKCI CYCGRG 3 cut(s) 197, 783, 1059
BsiSI CCGG 5 cut(s) 162, 176, 368, 399, 784
BslFI GGGAC 3 cut(s) 376, 961, 1006
BslI CCNNNNNNNGG 5 cut(s) 202, 203, 415, 428, 568
BsmAI GTCTC 3 cut(s) 577, 586, 875
BsmFI GGGAC 3 cut(s) 376, 961, 1006
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 4 cut(s) 96, 158, 258, 690
Bso31I GGTCTC 2 cut(s) 577, 875
BsoBI CYCGRG 3 cut(s) 197, 783, 1059
Bsp143I GATC 1 cut(s) 318
BspANI GGCC 4 cut(s) 96, 158, 258, 690
BspCNI CTCAG 2 cut(s) 1228, 1314
BspFNI CGCG 3 cut(s) 99, 240, 255
BspHI TCATGA 1 cut(s) 652
BspLI GGNNCC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 2 cut(s) 577, 875
BsrI ACTGG 2 cut(s) 363, 1177
BssECI CCNNGG 3 cut(s) 253, 783, 1354
BssMI GATC 1 cut(s) 318
BssNAI GTATAC 1 cut(s) 1189
BssNI GRCGYC 1 cut(s) 365
Bst1107I GTATAC 1 cut(s) 1189
Bst2UI CCWGG 4 cut(s) 692, 713, 875, 1238
Bst4CI ACNGT 4 cut(s) 352, 1358, 1520, 1526
Bst6I CTCTTC 4 cut(s) 15, 873, 1481, 1513
BstACI GRCGYC 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 21, 263, 1223
BstDEI CTNAG 2 cut(s) 1215, 1322
BstDSI CCRYGG 2 cut(s) 253, 1354
BstENI CCTNNNNNAGG 1 cut(s) 426
BstF5I GGATG 4 cut(s) 625, 907, 1018, 1499
BstFNI CGCG 3 cut(s) 99, 240, 255
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 3 cut(s) 577, 586, 875
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 3 cut(s) 97, 244, 259
BstMWI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
BstNI CCWGG 4 cut(s) 692, 713, 875, 1238
BstSCI CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
BstSFI CTRYAG 1 cut(s) 1461
BstUI CGCG 3 cut(s) 99, 240, 255
BstV1I GCAGC 5 cut(s) 74, 219, 538, 709, 1431
BstV2I GAAGAC 1 cut(s) 94
BstZ17I GTATAC 1 cut(s) 1189
BstZI CGGCCG 2 cut(s) 94, 256
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 4 cut(s) 96, 158, 258, 690
BtgI CCRYGG 2 cut(s) 253, 1354
BtsCI GGATG 4 cut(s) 625, 907, 1018, 1499
BtsI GCAGTG 2 cut(s) 152, 972
BtsIMutI CAGTG 4 cut(s) 152, 931, 972, 1319
Cac8I GCNNGC 3 cut(s) 21, 263, 1223
CciI TCATGA 1 cut(s) 652
CciNI GCGGCCGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 1326, 1358
Cfr42I CCGCGG 1 cut(s) 256
Cfr9I CCCGGG 1 cut(s) 783
CseI GACGC 3 cut(s) 88, 373, 1058
Csp6I GTAC 1 cut(s) 217
CviAII CATG 5 cut(s) 653, 814, 827, 1162, 1387
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 1215, 1322
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DraI TTTAAA 1 cut(s) 1350
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 3 cut(s) 94, 256, 688
EagI CGGCCG 2 cut(s) 94, 256
Eam1104I CTCTTC 4 cut(s) 15, 873, 1481, 1513
EarI CTCTTC 4 cut(s) 15, 873, 1481, 1513
EclXI CGGCCG 2 cut(s) 94, 256
Eco31I GGTCTC 2 cut(s) 577, 875
Eco32I GATATC 2 cut(s) 762, 1143
Eco47I GGWCC 2 cut(s) 1326, 1358
Eco52I CGGCCG 2 cut(s) 94, 256
Eco57I CTGAAG 3 cut(s) 88, 1424, 1462
Eco88I CYCGRG 3 cut(s) 197, 783, 1059
EcoNI CCTNNNNNAGG 1 cut(s) 426
EcoRII CCWGG 4 cut(s) 690, 711, 873, 1236
EcoRV GATATC 2 cut(s) 762, 1143
FaeI CATG 5 cut(s) 656, 817, 830, 1165, 1390
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FaqI GGGAC 3 cut(s) 376, 961, 1006
FatI CATG 5 cut(s) 652, 813, 826, 1161, 1386
FblI GTMKAC 1 cut(s) 1188
FokI GGATG 4 cut(s) 632, 894, 1025, 1486
FspBI CTAG 4 cut(s) 489, 771, 1134, 1546
GlaI GCGC 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 4 cut(s) 96, 158, 258, 690
HapII CCGG 5 cut(s) 162, 176, 368, 399, 784
HgaI GACGC 3 cut(s) 88, 373, 1058
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 365
Hin1II CATG 5 cut(s) 656, 817, 830, 1165, 1390
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HinfI GANTC 9 cut(s) 272, 803, 843, 865, 986, 1082, 1090, 1117, 1414
HpaII CCGG 5 cut(s) 162, 176, 368, 399, 784
HphI GGTGA 3 cut(s) 313, 866, 1488
Hpy166II GTNNAC 2 cut(s) 1076, 1189
Hpy188III TCNNGA 7 cut(s) 55, 112, 653, 869, 1061, 1121, 1249
Hpy8I GTNNAC 2 cut(s) 1076, 1189
Hpy99I CGWCG 5 cut(s) 95, 272, 302, 352, 1074
HpyAV CCTTC 5 cut(s) 71, 196, 422, 782, 912
HpyCH4III ACNGT 4 cut(s) 352, 1358, 1520, 1526
HpyCH4IV ACGT 1 cut(s) 599
HpyCH4V TGCA 8 cut(s) 118, 340, 355, 507, 526, 628, 697, 1127
HpyF10VI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
HpyF3I CTNAG 2 cut(s) 1215, 1322
HpySE526I ACGT 1 cut(s) 599
Hsp92I GRCGYC 1 cut(s) 365
Hsp92II CATG 5 cut(s) 656, 817, 830, 1165, 1390
HspAI GCGC 1 cut(s) 389
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 2 cut(s) 545, 730
Lsp1109I GCAGC 5 cut(s) 74, 219, 538, 709, 1431
LweI GCATC 2 cut(s) 105, 1114
MaeI CTAG 4 cut(s) 489, 771, 1134, 1546
MaeII ACGT 1 cut(s) 599
MaeIII GTNAC 4 cut(s) 404, 854, 928, 1520
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MlsI TGGCCA 1 cut(s) 690
MluCI AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
MluNI TGGCCA 1 cut(s) 690
MlyI GAGTC 4 cut(s) 281, 874, 1076, 1126
MmeI TCCRAC 6 cut(s) 132, 156, 303, 321, 935, 1118
Mox20I TGGCCA 1 cut(s) 690
MscI TGGCCA 1 cut(s) 690
MseI TTAA 4 cut(s) 632, 891, 1157, 1349
MslI CAYNNNNRTG 1 cut(s) 657
Msp20I TGGCCA 1 cut(s) 690
MspA1I CMGCKG 2 cut(s) 255, 1444
MspI CCGG 5 cut(s) 162, 176, 368, 399, 784
MspR9I CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
Mva1269I GAATGC 1 cut(s) 548
MvaI CCWGG 4 cut(s) 692, 713, 875, 1238
MvnI CGCG 3 cut(s) 99, 240, 255
MwoI GCNNNNNNNGC 5 cut(s) 93, 96, 105, 230, 252
NciI CCSGG 4 cut(s) 369, 400, 784, 785
NdeII GATC 1 cut(s) 318
NlaIII CATG 5 cut(s) 656, 817, 830, 1165, 1390
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 404, 854
NotI GCGGCCGC 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 1059
PagI TCATGA 1 cut(s) 652
PcsI WCGNNNNNNNCGW 4 cut(s) 237, 276, 294, 1066
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 5 cut(s) 803, 843, 986, 1090, 1414
PflFI GACNNNGTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 711
PleI GAGTC 4 cut(s) 280, 873, 1076, 1125
PpsI GAGTC 4 cut(s) 280, 873, 1076, 1125
PsiI TTATAA 1 cut(s) 897
Psp6I CCWGG 4 cut(s) 690, 711, 873, 1236
PspGI CCWGG 4 cut(s) 690, 711, 873, 1236
PspN4I GGNNCC 1 cut(s) 420
PspPI GGNCC 2 cut(s) 1326, 1358
PsrI GAACNNNNNNTAC 4 cut(s) 424, 456, 606, 638
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 1444
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 657
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 4 cut(s) 632, 891, 1157, 1349
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 2 cut(s) 1326, 1358
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 4 cut(s) 281, 874, 1076, 1126
ScrFI CCNGG 8 cut(s) 369, 400, 692, 713, 784, 785, 875, 1238
SfaNI GCATC 2 cut(s) 105, 1114
SfcI CTRYAG 1 cut(s) 1461
Sfr274I CTCGAG 1 cut(s) 1059
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 2 cut(s) 1326, 1358
SlaI CTCGAG 1 cut(s) 1059
SmaI CCCGGG 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 2 cut(s) 1059, 1084
SmoI CTYRAG 2 cut(s) 1059, 1084
Sse9I AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
SspI AATATT 1 cut(s) 1103
SspMI CTAG 4 cut(s) 489, 771, 1134, 1546
StyD4I CCNGG 8 cut(s) 367, 398, 690, 711, 782, 783, 873, 1236
TaaI ACNGT 4 cut(s) 352, 1358, 1520, 1526
TaiI ACGT 1 cut(s) 602
TaqI TCGA 5 cut(s) 111, 213, 270, 485, 1060
TasI AATT 6 cut(s) 448, 847, 892, 936, 1048, 1269
TatI WGTACW 1 cut(s) 216
TauI GCSGC 5 cut(s) 99, 161, 185, 258, 261
TfiI GAWTC 5 cut(s) 803, 843, 986, 1090, 1414
Tru1I TTAA 4 cut(s) 632, 891, 1157, 1349
Tru9I TTAA 4 cut(s) 632, 891, 1157, 1349
TscAI CASTG 4 cut(s) 152, 931, 979, 1326
TseFI GTSAC 2 cut(s) 404, 854
TseI GCWGC 5 cut(s) 87, 207, 526, 722, 1444
Tsp45I GTSAC 2 cut(s) 404, 854
TspDTI ATGAA 5 cut(s) 389, 603, 669, 696, 1178
TspGWI ACGGA 1 cut(s) 491
TspMI CCCGGG 1 cut(s) 783
TspRI CASTG 4 cut(s) 152, 931, 979, 1326
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 2 cut(s) 1326, 1358
XagI CCTNNNNNAGG 1 cut(s) 426
XcmI CCANNNNNNNNNTGG 1 cut(s) 698
XhoI CTCGAG 1 cut(s) 1059
XmaI CCCGGG 1 cut(s) 783
XmiI GTMKAC 1 cut(s) 1188
XspI CTAG 4 cut(s) 489, 771, 1134, 1546
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.