WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35560 AT4G35560 |
| fragaria_vesca | FvH4_1g10310 |
| malus_domestica | MD15G1231200.v1.1 |
| prunus_persica | Prupe.7G183000_v2.0.a1 |
| pyrus_communis | pycom15g20610 |
| rosa_chinensis | RchiOBHm_Chr2g0097151 |
| rosa_laevigata | RLG00000016707 |
| rosa_multiflora | Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00144930 |
| rosa_rugosa | Rorug02G0064700.1 Rorug02G0064800 |
| rosa_samantha | Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900 |
| rosa_wichuraiana | Rw2G008700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 581, 843 |
| AarI | CACCTGC | 1 cut(s) | 635 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1892 |
| Acc36I | ACCTGC | 3 cut(s) | 635, 943, 1874 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1340 |
| AccI | GTMKAC | 2 cut(s) | 904, 1510 |
| AciI | CCGC | 1 cut(s) | 1363 |
| AclWI | GGATC | 3 cut(s) | 100, 113, 131 |
| AcsI | RAATTY | 8 cut(s) | 49, 289, 855, 1235, 2195, 2359, 2430, 2849 |
| AcuI | CTGAAG | 4 cut(s) | 531, 989, 2452, 2658 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1291, 1340, 2083 |
| AflII | CTTAAG | 1 cut(s) | 1048 |
| AflIII | ACRYGT | 3 cut(s) | 123, 399, 538 |
| AhlI | ACTAGT | 1 cut(s) | 1964 |
| AjnI | CCWGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 2344, 2350, 2376, 2382 |
| Alw21I | GWGCWC | 1 cut(s) | 1999 |
| Alw26I | GTCTC | 5 cut(s) | 65, 398, 1319, 1638, 2312 |
| AlwI | GGATC | 3 cut(s) | 100, 113, 131 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 560 |
| Ama87I | CYCGRG | 2 cut(s) | 1013, 1992 |
| AoxI | GGCC | 4 cut(s) | 1793, 2248, 2724, 2856 |
| ApeKI | GCWGC | 5 cut(s) | 557, 1358, 2132, 3019, 3115 |
| ApoI | RAATTY | 8 cut(s) | 49, 289, 855, 1235, 2195, 2359, 2430, 2849 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2195 |
| AspS9I | GGNCC | 3 cut(s) | 1793, 2289, 2544 |
| AsuHPI | GGTGA | 5 cut(s) | 533, 1161, 1207, 2425, 2432 |
| AsuII | TTCGAA | 2 cut(s) | 1582, 2658 |
| AvaI | CYCGRG | 2 cut(s) | 1013, 1992 |
| AvaII | GGWCC | 2 cut(s) | 2289, 2544 |
| AxyI | CCTNAGG | 1 cut(s) | 3056 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 516, 549 |
| BamHI | GGATCC | 1 cut(s) | 105 |
| BanII | GRGCYC | 2 cut(s) | 1423, 2078 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2168, 2200 |
| BbsI | GAAGAC | 1 cut(s) | 1158 |
| Bbv12I | GWGCWC | 1 cut(s) | 1999 |
| BbvCI | CCTCAGC | 1 cut(s) | 2082 |
| BbvI | GCAGC | 5 cut(s) | 569, 1370, 2119, 3006, 3102 |
| BceAI | ACGGC | 1 cut(s) | 2104 |
| BciT130I | CCWGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| BclI | TGATCA | 1 cut(s) | 2422 |
| BcoDI | GTCTC | 5 cut(s) | 65, 398, 1319, 1638, 2312 |
| BcuI | ACTAGT | 1 cut(s) | 1964 |
| BfaI | CTAG | 5 cut(s) | 801, 1758, 1965, 2744, 2750 |
| BfmI | CTRYAG | 4 cut(s) | 861, 1867, 3020, 3063 |
| BfrI | CTTAAG | 1 cut(s) | 1048 |
| BfuAI | ACCTGC | 3 cut(s) | 635, 943, 1874 |
| BglII | AGATCT | 1 cut(s) | 2010 |
| BisI | GCNGC | 5 cut(s) | 558, 1359, 2133, 3020, 3116 |
| BlsI | GCNGC | 5 cut(s) | 559, 1360, 2134, 3021, 3117 |
| BmcAI | AGTACT | 2 cut(s) | 814, 1963 |
| Bme1390I | CCNGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| Bme18I | GGWCC | 2 cut(s) | 2289, 2544 |
| BmeT110I | CYCGRG | 2 cut(s) | 1013, 1992 |
| BmgT120I | GGNCC | 3 cut(s) | 1793, 2289, 2544 |
| BmiI | GGNNCC | 3 cut(s) | 107, 1420, 2075 |
| BmrFI | CCNGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| BmsI | GCATC | 5 cut(s) | 875, 1851, 2213, 2692, 3060 |
| BoxI | GACNNNNGTC | 1 cut(s) | 84 |
| BpiI | GAAGAC | 1 cut(s) | 1158 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2891, 2923 |
| BpmI | CTGGAG | 3 cut(s) | 784, 1581, 2808 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2082 |
| Bpu14I | TTCGAA | 2 cut(s) | 1582, 2658 |
| BpuEI | CTTGAG | 4 cut(s) | 192, 239, 464, 2083 |
| BsaAI | YACGTR | 1 cut(s) | 2140 |
| BsaI | GGTCTC | 1 cut(s) | 65 |
| BsaJI | CCNNGG | 5 cut(s) | 168, 268, 496, 2727, 3099 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2391, 2421 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1291, 1340, 2083 |
| Bse118I | RCCGGY | 1 cut(s) | 1838 |
| Bse1I | ACTGG | 4 cut(s) | 523, 1375, 1408, 1514 |
| Bse21I | CCTNAGG | 1 cut(s) | 3056 |
| Bse3DI | GCAATG | 3 cut(s) | 656, 751, 1175 |
| BseBI | CCWGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| BseDI | CCNNGG | 5 cut(s) | 168, 268, 496, 2727, 3099 |
| BseGI | GGATG | 8 cut(s) | 178, 1495, 1975, 2023, 2032, 2737, 2935, 3095 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1291, 1340, 2083 |
| BseMI | GCAATG | 3 cut(s) | 656, 751, 1175 |
| BseMII | CTCAG | 5 cut(s) | 1361, 2073, 2616, 2889, 3047 |
| BseNI | ACTGG | 4 cut(s) | 523, 1375, 1408, 1514 |
| BseRI | GAGGAG | 2 cut(s) | 2227, 2977 |
| BseXI | GCAGC | 5 cut(s) | 569, 1370, 2119, 3006, 3102 |
| BseYI | CCCAGC | 2 cut(s) | 702, 2214 |
| BshFI | GGCC | 4 cut(s) | 1795, 2250, 2726, 2858 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1999 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1013, 1992 |
| BsiSI | CCGG | 2 cut(s) | 1839, 2297 |
| BslFI | GGGAC | 1 cut(s) | 2606 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1291, 1340, 2083 |
| BsmAI | GTCTC | 5 cut(s) | 65, 398, 1319, 1638, 2312 |
| BsmFI | GGGAC | 1 cut(s) | 2606 |
| BsmI | GAATGC | 1 cut(s) | 1302 |
| BsnI | GGCC | 4 cut(s) | 1795, 2250, 2726, 2858 |
| Bso31I | GGTCTC | 1 cut(s) | 65 |
| BsoBI | CYCGRG | 2 cut(s) | 1013, 1992 |
| Bsp119I | TTCGAA | 2 cut(s) | 1582, 2658 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1423, 1999, 2078 |
| Bsp1407I | TGTACA | 1 cut(s) | 1395 |
| Bsp19I | CCATGG | 1 cut(s) | 496 |
| BspACI | CCGC | 1 cut(s) | 1363 |
| BspANI | GGCC | 4 cut(s) | 1795, 2250, 2726, 2858 |
| BspCNI | CTCAG | 5 cut(s) | 1360, 2074, 2617, 2890, 3048 |
| BspHI | TCATGA | 2 cut(s) | 673, 3143 |
| BspLI | GGNNCC | 3 cut(s) | 107, 1420, 2075 |
| BspMAI | CTGCAG | 2 cut(s) | 1871, 3024 |
| BspMI | ACCTGC | 3 cut(s) | 635, 943, 1874 |
| BspPI | GGATC | 3 cut(s) | 100, 113, 131 |
| BspQI | GCTCTTC | 2 cut(s) | 2392, 2913 |
| BspT104I | TTCGAA | 2 cut(s) | 1582, 2658 |
| BspTI | CTTAAG | 1 cut(s) | 1048 |
| BspTNI | GGTCTC | 1 cut(s) | 65 |
| BsrDI | GCAATG | 3 cut(s) | 656, 751, 1175 |
| BsrFI | RCCGGY | 1 cut(s) | 1838 |
| BsrGI | TGTACA | 1 cut(s) | 1395 |
| BsrI | ACTGG | 4 cut(s) | 523, 1375, 1408, 1514 |
| BssAI | RCCGGY | 1 cut(s) | 1838 |
| BssECI | CCNNGG | 5 cut(s) | 168, 268, 496, 2727, 3099 |
| BssNAI | GTATAC | 1 cut(s) | 1511 |
| BssT1I | CCWWGG | 4 cut(s) | 168, 268, 496, 3099 |
| Bst1107I | GTATAC | 1 cut(s) | 1511 |
| Bst2UI | CCWGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| Bst6I | CTCTTC | 4 cut(s) | 943, 1641, 2392, 2913 |
| BstAFI | CTTAAG | 1 cut(s) | 1048 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2996 |
| BstAUI | TGTACA | 1 cut(s) | 1395 |
| BstBAI | YACGTR | 1 cut(s) | 2140 |
| BstBI | TTCGAA | 2 cut(s) | 1582, 2658 |
| BstC8I | GCNNGC | 9 cut(s) | 348, 700, 709, 1064, 1363, 2093, 2724, 2845, 3017 |
| BstDEI | CTNAG | 6 cut(s) | 1347, 1897, 2082, 2625, 2898, 3056 |
| BstDSI | CCRYGG | 1 cut(s) | 496 |
| BstF5I | GGATG | 8 cut(s) | 178, 1495, 1975, 2023, 2032, 2737, 2935, 3095 |
| BstMAI | GTCTC | 5 cut(s) | 65, 398, 1319, 1638, 2312 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 704, 708, 805, 1009, 1063, 2073, 2996, 3005 |
| BstNI | CCWGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| BstNSI | RCATGY | 6 cut(s) | 127, 350, 403, 542, 702, 711 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 84 |
| BstSCI | CCNGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| BstSFI | CTRYAG | 4 cut(s) | 861, 1867, 3020, 3063 |
| BstSNI | TACGTA | 1 cut(s) | 2140 |
| BstV1I | GCAGC | 5 cut(s) | 569, 1370, 2119, 3006, 3102 |
| BstV2I | GAAGAC | 1 cut(s) | 1158 |
| BstX2I | RGATCY | 2 cut(s) | 105, 2010 |
| BstYI | RGATCY | 2 cut(s) | 105, 2010 |
| BstZ17I | GTATAC | 1 cut(s) | 1511 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3056 |
| BsuRI | GGCC | 4 cut(s) | 1795, 2250, 2726, 2858 |
| BtgI | CCRYGG | 1 cut(s) | 496 |
| BtsCI | GGATG | 8 cut(s) | 178, 1495, 1975, 2023, 2032, 2737, 2935, 3095 |
| BtsI | GCAGTG | 1 cut(s) | 76 |
| BtsIMutI | CAGTG | 4 cut(s) | 76, 375, 1233, 1368 |
| BveI | ACCTGC | 3 cut(s) | 635, 943, 1874 |
| Cac8I | GCNNGC | 9 cut(s) | 348, 700, 709, 1064, 1363, 2093, 2724, 2845, 3017 |
| CaiI | CAGNNNCTG | 1 cut(s) | 560 |
| CciI | TCATGA | 2 cut(s) | 673, 3143 |
| Cfr10I | RCCGGY | 1 cut(s) | 1838 |
| Cfr13I | GGNCC | 3 cut(s) | 1793, 2289, 2544 |
| DdeI | CTNAG | 6 cut(s) | 1347, 1897, 2082, 2625, 2898, 3056 |
| DraI | TTTAAA | 2 cut(s) | 826, 2863 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1892 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1892 |
| Eam1104I | CTCTTC | 4 cut(s) | 943, 1641, 2392, 2913 |
| EarI | CTCTTC | 4 cut(s) | 943, 1641, 2392, 2913 |
| Eco105I | TACGTA | 1 cut(s) | 2140 |
| Eco130I | CCWWGG | 4 cut(s) | 168, 268, 496, 3099 |
| Eco24I | GRGCYC | 2 cut(s) | 1423, 2078 |
| Eco31I | GGTCTC | 1 cut(s) | 65 |
| Eco47I | GGWCC | 2 cut(s) | 2289, 2544 |
| Eco57I | CTGAAG | 4 cut(s) | 531, 989, 2452, 2658 |
| Eco81I | CCTNAGG | 1 cut(s) | 3056 |
| Eco88I | CYCGRG | 2 cut(s) | 1013, 1992 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2289 |
| EcoRI | GAATTC | 1 cut(s) | 289 |
| EcoRII | CCWGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| EcoT14I | CCWWGG | 4 cut(s) | 168, 268, 496, 3099 |
| EcoT22I | ATGCAT | 1 cut(s) | 658 |
| EcoT38I | GRGCYC | 2 cut(s) | 1423, 2078 |
| ErhI | CCWWGG | 4 cut(s) | 168, 268, 496, 3099 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 201, 233, 261, 293, 1880, 1912, 2388, 2420 |
| FaqI | GGGAC | 1 cut(s) | 2606 |
| FauI | CCCGC | 1 cut(s) | 1370 |
| FauNDI | CATATG | 1 cut(s) | 1609 |
| FbaI | TGATCA | 1 cut(s) | 2422 |
| FblI | GTMKAC | 2 cut(s) | 904, 1510 |
| Fnu4HI | GCNGC | 5 cut(s) | 558, 1359, 2133, 3020, 3116 |
| FokI | GGATG | 8 cut(s) | 185, 1502, 1962, 2030, 2039, 2744, 2942, 3082 |
| FriOI | GRGCYC | 2 cut(s) | 1423, 2078 |
| Fsp4HI | GCNGC | 5 cut(s) | 558, 1359, 2133, 3020, 3116 |
| FspBI | CTAG | 5 cut(s) | 801, 1758, 1965, 2744, 2750 |
| GluI | GCNGC | 5 cut(s) | 558, 1359, 2133, 3020, 3116 |
| GsaI | CCCAGC | 2 cut(s) | 706, 2218 |
| GsuI | CTGGAG | 3 cut(s) | 784, 1581, 2808 |
| HaeIII | GGCC | 4 cut(s) | 1795, 2250, 2726, 2858 |
| HapII | CCGG | 2 cut(s) | 1839, 2297 |
| HincII | GTYRAC | 2 cut(s) | 2817, 2950 |
| HindII | GTYRAC | 2 cut(s) | 2817, 2950 |
| HindIII | AAGCTT | 4 cut(s) | 14, 440, 1045, 2464 |
| HinfI | GANTC | 9 cut(s) | 221, 413, 502, 1214, 1584, 1916, 2480, 2973, 3048 |
| HpaII | CCGG | 2 cut(s) | 1839, 2297 |
| HphI | GGTGA | 5 cut(s) | 533, 1161, 1207, 2425, 2432 |
| Hpy166II | GTNNAC | 8 cut(s) | 474, 905, 1448, 1511, 1720, 2416, 2817, 2950 |
| Hpy8I | GTNNAC | 8 cut(s) | 474, 905, 1448, 1511, 1720, 2416, 2817, 2950 |
| Hpy99I | CGWCG | 1 cut(s) | 2674 |
| HpyCH4IV | ACGT | 1 cut(s) | 2139 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 704, 708, 805, 1009, 1063, 2073, 2996, 3005 |
| HpyF3I | CTNAG | 6 cut(s) | 1347, 1897, 2082, 2625, 2898, 3056 |
| HpySE526I | ACGT | 1 cut(s) | 2139 |
| Ksp22I | TGATCA | 1 cut(s) | 2422 |
| LguI | GCTCTTC | 2 cut(s) | 2392, 2913 |
| LmnI | GCTCC | 2 cut(s) | 1418, 2073 |
| Lsp1109I | GCAGC | 5 cut(s) | 569, 1370, 2119, 3006, 3102 |
| LweI | GCATC | 5 cut(s) | 875, 1851, 2213, 2692, 3060 |
| MaeI | CTAG | 5 cut(s) | 801, 1758, 1965, 2744, 2750 |
| MaeII | ACGT | 1 cut(s) | 2139 |
| MaeIII | GTNAC | 5 cut(s) | 119, 200, 534, 688, 1516 |
| MflI | RGATCY | 2 cut(s) | 105, 2010 |
| MhlI | GDGCHC | 3 cut(s) | 1423, 1999, 2078 |
| MlyI | GAGTC | 2 cut(s) | 230, 2474 |
| MmeI | TCCRAC | 3 cut(s) | 388, 530, 828 |
| Mph1103I | ATGCAT | 1 cut(s) | 658 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2195 |
| MslI | CAYNNNNRTG | 7 cut(s) | 115, 380, 874, 1226, 1413, 2768, 2774 |
| MspA1I | CMGCKG | 1 cut(s) | 560 |
| MspCI | CTTAAG | 1 cut(s) | 1048 |
| MspI | CCGG | 2 cut(s) | 1839, 2297 |
| MspR9I | CCNGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| Mva1269I | GAATGC | 1 cut(s) | 1302 |
| MvaI | CCWGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 704, 708, 805, 1009, 1063, 2073, 2996, 3005 |
| NcoI | CCATGG | 1 cut(s) | 496 |
| NdeI | CATATG | 1 cut(s) | 1609 |
| NlaIV | GGNNCC | 3 cut(s) | 107, 1420, 2075 |
| NmeAIII | GCCGAG | 1 cut(s) | 1525 |
| NmuCI | GTSAC | 2 cut(s) | 688, 1516 |
| NsiI | ATGCAT | 1 cut(s) | 658 |
| NspI | RCATGY | 6 cut(s) | 127, 350, 403, 542, 702, 711 |
| NspV | TTCGAA | 2 cut(s) | 1582, 2658 |
| PaeI | GCATGC | 3 cut(s) | 350, 702, 711 |
| PaeR7I | CTCGAG | 1 cut(s) | 1992 |
| PagI | TCATGA | 2 cut(s) | 673, 3143 |
| PaqCI | CACCTGC | 1 cut(s) | 635 |
| PciI | ACATGT | 3 cut(s) | 123, 399, 538 |
| PciSI | GCTCTTC | 2 cut(s) | 2392, 2913 |
| PctI | GAATGC | 1 cut(s) | 1302 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2195 |
| PfeI | GAWTC | 7 cut(s) | 413, 502, 1214, 1584, 1916, 2973, 3048 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1340 |
| PfoI | TCCNGGA | 2 cut(s) | 2536, 2785 |
| PkrI | GCNGC | 5 cut(s) | 559, 1360, 2134, 3021, 3117 |
| PleI | GAGTC | 2 cut(s) | 229, 2474 |
| PpsI | GAGTC | 2 cut(s) | 229, 2474 |
| Ppu21I | YACGTR | 1 cut(s) | 2140 |
| PpuMI | RGGWCCY | 1 cut(s) | 2289 |
| PscI | ACATGT | 3 cut(s) | 123, 399, 538 |
| PshAI | GACNNNNGTC | 1 cut(s) | 84 |
| PsiI | TTATAA | 2 cut(s) | 581, 843 |
| Psp5II | RGGWCCY | 1 cut(s) | 2289 |
| Psp6I | CCWGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| PspFI | CCCAGC | 2 cut(s) | 702, 2214 |
| PspGI | CCWGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| PspN4I | GGNNCC | 3 cut(s) | 107, 1420, 2075 |
| PspPI | GGNCC | 3 cut(s) | 1793, 2289, 2544 |
| PspPPI | RGGWCCY | 1 cut(s) | 2289 |
| PspXI | VCTCGAGB | 1 cut(s) | 1992 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 444, 476 |
| PstI | CTGCAG | 2 cut(s) | 1871, 3024 |
| PstNI | CAGNNNCTG | 1 cut(s) | 560 |
| PsuI | RGATCY | 2 cut(s) | 105, 2010 |
| PvuII | CAGCTG | 1 cut(s) | 560 |
| RseI | CAYNNNNRTG | 7 cut(s) | 115, 380, 874, 1226, 1413, 2768, 2774 |
| SapI | GCTCTTC | 2 cut(s) | 2392, 2913 |
| SatI | GCNGC | 5 cut(s) | 558, 1359, 2133, 3020, 3116 |
| Sau96I | GGNCC | 3 cut(s) | 1793, 2289, 2544 |
| ScaI | AGTACT | 2 cut(s) | 814, 1963 |
| SchI | GAGTC | 2 cut(s) | 230, 2474 |
| ScrFI | CCNGG | 5 cut(s) | 42, 1292, 2538, 2728, 2787 |
| SduI | GDGCHC | 3 cut(s) | 1423, 1999, 2078 |
| SfaNI | GCATC | 5 cut(s) | 875, 1851, 2213, 2692, 3060 |
| SfcI | CTRYAG | 4 cut(s) | 861, 1867, 3020, 3063 |
| Sfr274I | CTCGAG | 1 cut(s) | 1992 |
| SfuI | TTCGAA | 2 cut(s) | 1582, 2658 |
| SinI | GGWCC | 2 cut(s) | 2289, 2544 |
| SlaI | CTCGAG | 1 cut(s) | 1992 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 115, 380, 874, 1226, 1413, 2768, 2774 |
| SmlI | CTYRAG | 6 cut(s) | 207, 218, 443, 1048, 1992, 2062 |
| SmoI | CTYRAG | 6 cut(s) | 207, 218, 443, 1048, 1992, 2062 |
| SnaBI | TACGTA | 1 cut(s) | 2140 |
| SpeI | ACTAGT | 1 cut(s) | 1964 |
| SphI | GCATGC | 3 cut(s) | 350, 702, 711 |
| SsiI | CCGC | 1 cut(s) | 1363 |
| SspI | AATATT | 1 cut(s) | 2995 |
| SspMI | CTAG | 5 cut(s) | 801, 1758, 1965, 2744, 2750 |
| StyD4I | CCNGG | 5 cut(s) | 40, 1290, 2536, 2726, 2785 |
| StyI | CCWWGG | 4 cut(s) | 168, 268, 496, 3099 |
| TaiI | ACGT | 1 cut(s) | 2142 |
| TaqI | TCGA | 9 cut(s) | 619, 1134, 1582, 1993, 2222, 2378, 2658, 2669, 2766 |
| TatI | WGTACW | 8 cut(s) | 460, 471, 541, 812, 1395, 1708, 1733, 1961 |
| TfiI | GAWTC | 7 cut(s) | 413, 502, 1214, 1584, 1916, 2973, 3048 |
| TscAI | CASTG | 4 cut(s) | 76, 382, 1233, 1375 |
| TseFI | GTSAC | 2 cut(s) | 688, 1516 |
| TseI | GCWGC | 5 cut(s) | 557, 1358, 2132, 3019, 3115 |
| Tsp45I | GTSAC | 2 cut(s) | 688, 1516 |
| TspGWI | ACGGA | 1 cut(s) | 2557 |
| TspRI | CASTG | 4 cut(s) | 76, 382, 1233, 1375 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1340 |
| Vha464I | CTTAAG | 1 cut(s) | 1048 |
| VpaK11BI | GGWCC | 2 cut(s) | 2289, 2544 |
| XapI | RAATTY | 8 cut(s) | 49, 289, 855, 1235, 2195, 2359, 2430, 2849 |
| XceI | RCATGY | 6 cut(s) | 127, 350, 403, 542, 702, 711 |
| XhoI | CTCGAG | 1 cut(s) | 1992 |
| XmiI | GTMKAC | 2 cut(s) | 904, 1510 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2195 |
| XspI | CTAG | 5 cut(s) | 801, 1758, 1965, 2744, 2750 |
| ZrmI | AGTACT | 2 cut(s) | 814, 1963 |
| Zsp2I | ATGCAT | 1 cut(s) | 658 |