WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35560 AT4G35560 |
| fragaria_vesca | FvH4_1g10310 |
| malus_domestica | MD15G1231200.v1.1 |
| prunus_persica | Prupe.7G183000_v2.0.a1 |
| pyrus_communis | pycom15g20610 |
| rosa_chinensis | RchiOBHm_Chr2g0097151 |
| rosa_laevigata | RLG00000016707 |
| rosa_multiflora | Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00144930 |
| rosa_rugosa | Rorug02G0064700.1 Rorug02G0064800 |
| rosa_samantha | Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900 |
| rosa_wichuraiana | Rw2G008700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 831 |
| Acc36I | ACCTGC | 1 cut(s) | 683 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1546 |
| AccI | GTMKAC | 1 cut(s) | 319 |
| AclI | AACGTT | 1 cut(s) | 1821 |
| AcsI | RAATTY | 5 cut(s) | 44, 199, 235, 1177, 1673 |
| AcuI | CTGAAG | 1 cut(s) | 1547 |
| AfaI | GTAC | 5 cut(s) | 206, 457, 895, 1363, 1440 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 100, 1546 |
| AgsI | TTSAA | 9 cut(s) | 189, 349, 449, 865, 1049, 1100, 1143, 1306, 1500 |
| AjnI | CCWGG | 2 cut(s) | 1539, 1609 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1168, 1200 |
| Alw21I | GWGCWC | 3 cut(s) | 545, 773, 808 |
| Alw26I | GTCTC | 4 cut(s) | 128, 447, 661, 1130 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 925 |
| AoxI | GGCC | 3 cut(s) | 602, 1066, 1680 |
| ApeKI | GCWGC | 8 cut(s) | 817, 928, 931, 950, 1029, 1643, 1846, 1889 |
| ApoI | RAATTY | 5 cut(s) | 44, 199, 235, 1177, 1673 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1013, 1251 |
| AspLEI | GCGC | 1 cut(s) | 832 |
| AspS9I | GGNCC | 2 cut(s) | 602, 1107 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 1243, 1250, 1529 |
| AsuII | TTCGAA | 1 cut(s) | 391 |
| AvaII | GGWCC | 1 cut(s) | 1107 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 828, 861 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 986, 1018 |
| Bbv12I | GWGCWC | 3 cut(s) | 545, 773, 808 |
| BbvI | GCAGC | 8 cut(s) | 829, 915, 918, 937, 1016, 1655, 1833, 1876 |
| BccI | CCATC | 3 cut(s) | 124, 143, 218 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1849, 1883 |
| BciT130I | CCWGG | 2 cut(s) | 1541, 1611 |
| BclI | TGATCA | 2 cut(s) | 472, 1240 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BcoDI | GTCTC | 4 cut(s) | 128, 447, 661, 1130 |
| BfaI | CTAG | 5 cut(s) | 567, 801, 1464, 1568, 1574 |
| BfmI | CTRYAG | 5 cut(s) | 78, 676, 1455, 1847, 1890 |
| BfuAI | ACCTGC | 1 cut(s) | 683 |
| BisI | GCNGC | 8 cut(s) | 818, 929, 932, 951, 1030, 1644, 1847, 1890 |
| BlsI | GCNGC | 8 cut(s) | 819, 930, 933, 952, 1031, 1645, 1848, 1891 |
| Bme1390I | CCNGG | 3 cut(s) | 355, 1541, 1611 |
| Bme18I | GGWCC | 1 cut(s) | 1107 |
| BmgT120I | GGNCC | 2 cut(s) | 602, 1107 |
| BmiI | GGNNCC | 1 cut(s) | 229 |
| BmrFI | CCNGG | 3 cut(s) | 355, 1541, 1611 |
| BmsI | GCATC | 3 cut(s) | 176, 817, 1046 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1715, 1747 |
| BpmI | CTGGAG | 2 cut(s) | 390, 1632 |
| Bpu14I | TTCGAA | 1 cut(s) | 391 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1557 |
| BsaJI | CCNNGG | 1 cut(s) | 1926 |
| BsaWI | WCCGGW | 1 cut(s) | 1733 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 947, 977, 1209, 1239 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 100, 1546 |
| Bse118I | RCCGGY | 1 cut(s) | 647 |
| Bse1I | ACTGG | 4 cut(s) | 184, 217, 774, 846 |
| Bse3DI | GCAATG | 1 cut(s) | 627 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1557 |
| BseBI | CCWGG | 2 cut(s) | 1541, 1611 |
| BseDI | CCNNGG | 1 cut(s) | 1926 |
| BseJI | GATNNNNATC | 1 cut(s) | 1557 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 100, 1546 |
| BseMI | GCAATG | 1 cut(s) | 627 |
| BseMII | CTCAG | 5 cut(s) | 170, 933, 1413, 1434, 1515 |
| BseNI | ACTGG | 4 cut(s) | 184, 217, 774, 846 |
| BseXI | GCAGC | 8 cut(s) | 829, 915, 918, 937, 1016, 1655, 1833, 1876 |
| BseYI | CCCAGC | 1 cut(s) | 1032 |
| BshFI | GGCC | 3 cut(s) | 604, 1068, 1682 |
| BsiHKAI | GWGCWC | 3 cut(s) | 545, 773, 808 |
| BsiSI | CCGG | 3 cut(s) | 355, 648, 1734 |
| BslFI | GGGAC | 1 cut(s) | 166 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 100, 1546 |
| BsmAI | GTCTC | 4 cut(s) | 128, 447, 661, 1130 |
| BsmFI | GGGAC | 1 cut(s) | 166 |
| BsnI | GGCC | 3 cut(s) | 604, 1068, 1682 |
| Bsp119I | TTCGAA | 1 cut(s) | 391 |
| Bsp1286I | GDGCHC | 3 cut(s) | 545, 773, 808 |
| Bsp1407I | TGTACA | 1 cut(s) | 204 |
| Bsp143I | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| BspANI | GGCC | 3 cut(s) | 604, 1068, 1682 |
| BspCNI | CTCAG | 5 cut(s) | 169, 934, 1412, 1435, 1516 |
| BspHI | TCATGA | 1 cut(s) | 1970 |
| BspLI | GGNNCC | 1 cut(s) | 229 |
| BspMAI | CTGCAG | 5 cut(s) | 82, 680, 1459, 1851, 1894 |
| BspMI | ACCTGC | 1 cut(s) | 683 |
| BspQI | GCTCTTC | 2 cut(s) | 1338, 1740 |
| BspT104I | TTCGAA | 1 cut(s) | 391 |
| BsrDI | GCAATG | 1 cut(s) | 627 |
| BsrFI | RCCGGY | 1 cut(s) | 647 |
| BsrGI | TGTACA | 1 cut(s) | 204 |
| BsrI | ACTGG | 4 cut(s) | 184, 217, 774, 846 |
| BssAI | RCCGGY | 1 cut(s) | 647 |
| BssECI | CCNNGG | 1 cut(s) | 1926 |
| BssMI | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| BssNAI | GTATAC | 1 cut(s) | 320 |
| BssT1I | CCWWGG | 1 cut(s) | 1926 |
| Bst1107I | GTATAC | 1 cut(s) | 320 |
| Bst2UI | CCWGG | 2 cut(s) | 1541, 1611 |
| Bst4CI | ACNGT | 5 cut(s) | 221, 388, 898, 1193, 1238 |
| Bst6I | CTCTTC | 3 cut(s) | 450, 1338, 1740 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 925 |
| BstAUI | TGTACA | 1 cut(s) | 204 |
| BstBI | TTCGAA | 1 cut(s) | 391 |
| BstC8I | GCNNGC | 2 cut(s) | 102, 1844 |
| BstDEI | CTNAG | 9 cut(s) | 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883 |
| BstHHI | GCGC | 1 cut(s) | 832 |
| BstKTI | GATC | 6 cut(s) | 304, 376, 475, 854, 1243, 1561 |
| BstMAI | GTCTC | 4 cut(s) | 128, 447, 661, 1130 |
| BstMBI | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 925, 1747, 1832 |
| BstNI | CCWGG | 2 cut(s) | 1541, 1611 |
| BstNSI | RCATGY | 1 cut(s) | 70 |
| BstSCI | CCNGG | 3 cut(s) | 353, 1539, 1609 |
| BstSFI | CTRYAG | 5 cut(s) | 78, 676, 1455, 1847, 1890 |
| BstV1I | GCAGC | 8 cut(s) | 829, 915, 918, 937, 1016, 1655, 1833, 1876 |
| BstZ17I | GTATAC | 1 cut(s) | 320 |
| BsuRI | GGCC | 3 cut(s) | 604, 1068, 1682 |
| BtsIMutI | CAGTG | 3 cut(s) | 226, 839, 903 |
| BveI | ACCTGC | 1 cut(s) | 683 |
| Cac8I | GCNNGC | 2 cut(s) | 102, 1844 |
| CaiI | CAGNNNCTG | 1 cut(s) | 925 |
| CciI | TCATGA | 1 cut(s) | 1970 |
| CfoI | GCGC | 1 cut(s) | 832 |
| Cfr10I | RCCGGY | 1 cut(s) | 647 |
| Cfr13I | GGNCC | 2 cut(s) | 602, 1107 |
| CseI | GACGC | 1 cut(s) | 1529 |
| Csp6I | GTAC | 5 cut(s) | 205, 456, 894, 1362, 1439 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 634, 669 |
| CviAII | CATG | 9 cut(s) | 67, 252, 686, 814, 833, 979, 1594, 1600, 1971 |
| CviQI | GTAC | 5 cut(s) | 205, 456, 894, 1362, 1439 |
| DdeI | CTNAG | 9 cut(s) | 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883 |
| DpnI | GATC | 6 cut(s) | 303, 375, 474, 853, 1242, 1560 |
| DpnII | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| DraI | TTTAAA | 1 cut(s) | 1687 |
| Eam1104I | CTCTTC | 3 cut(s) | 450, 1338, 1740 |
| EarI | CTCTTC | 3 cut(s) | 450, 1338, 1740 |
| Eco130I | CCWWGG | 1 cut(s) | 1926 |
| Eco147I | AGGCCT | 1 cut(s) | 1068 |
| Eco32I | GATATC | 1 cut(s) | 1414 |
| Eco47I | GGWCC | 1 cut(s) | 1107 |
| Eco57I | CTGAAG | 1 cut(s) | 1547 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1107 |
| EcoRII | CCWGG | 2 cut(s) | 1539, 1609 |
| EcoRV | GATATC | 1 cut(s) | 1414 |
| EcoT14I | CCWWGG | 1 cut(s) | 1926 |
| EcoT22I | ATGCAT | 1 cut(s) | 169 |
| ErhI | CCWWGG | 1 cut(s) | 1926 |
| FaeI | CATG | 9 cut(s) | 70, 255, 689, 817, 836, 982, 1597, 1603, 1974 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 689, 721, 1206, 1238, 1332, 1364 |
| FaqI | GGGAC | 1 cut(s) | 166 |
| FatI | CATG | 9 cut(s) | 66, 251, 685, 813, 832, 978, 1593, 1599, 1970 |
| FauNDI | CATATG | 1 cut(s) | 418 |
| FbaI | TGATCA | 2 cut(s) | 472, 1240 |
| FblI | GTMKAC | 1 cut(s) | 319 |
| Fnu4HI | GCNGC | 8 cut(s) | 818, 929, 932, 951, 1030, 1644, 1847, 1890 |
| Fsp4HI | GCNGC | 8 cut(s) | 818, 929, 932, 951, 1030, 1644, 1847, 1890 |
| FspAI | RTGCGCAY | 1 cut(s) | 831 |
| FspBI | CTAG | 5 cut(s) | 567, 801, 1464, 1568, 1574 |
| FspI | TGCGCA | 1 cut(s) | 831 |
| GlaI | GCGC | 1 cut(s) | 831 |
| GluI | GCNGC | 8 cut(s) | 818, 929, 932, 951, 1030, 1644, 1847, 1890 |
| GsaI | CCCAGC | 1 cut(s) | 1036 |
| GsuI | CTGGAG | 2 cut(s) | 390, 1632 |
| HaeIII | GGCC | 3 cut(s) | 604, 1068, 1682 |
| HapII | CCGG | 3 cut(s) | 355, 648, 1734 |
| HgaI | GACGC | 1 cut(s) | 1529 |
| HhaI | GCGC | 1 cut(s) | 832 |
| Hin1II | CATG | 9 cut(s) | 70, 255, 689, 817, 836, 982, 1597, 1603, 1974 |
| Hin6I | GCGC | 1 cut(s) | 830 |
| HinP1I | GCGC | 1 cut(s) | 830 |
| HincII | GTYRAC | 4 cut(s) | 22, 1519, 1665, 1777 |
| HindII | GTYRAC | 4 cut(s) | 22, 1519, 1665, 1777 |
| HindIII | AAGCTT | 2 cut(s) | 109, 1282 |
| HinfI | GANTC | 6 cut(s) | 23, 154, 393, 402, 725, 1814 |
| HpaII | CCGG | 3 cut(s) | 355, 648, 1734 |
| HphI | GGTGA | 4 cut(s) | 16, 1243, 1250, 1529 |
| Hpy188I | TCNGA | 5 cut(s) | 378, 943, 1170, 1189, 1650 |
| Hpy188III | TCNNGA | 5 cut(s) | 369, 743, 872, 1244, 1971 |
| HpyAV | CCTTC | 7 cut(s) | 104, 593, 976, 988, 1135, 1208, 1756 |
| HpyCH4III | ACNGT | 5 cut(s) | 221, 388, 898, 1193, 1238 |
| HpyCH4IV | ACGT | 2 cut(s) | 426, 1821 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 925, 1747, 1832 |
| HpyF3I | CTNAG | 9 cut(s) | 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883 |
| HpySE526I | ACGT | 2 cut(s) | 426, 1821 |
| Hsp92II | CATG | 9 cut(s) | 70, 255, 689, 817, 836, 982, 1597, 1603, 1974 |
| HspAI | GCGC | 1 cut(s) | 830 |
| Ksp22I | TGATCA | 2 cut(s) | 472, 1240 |
| Kzo9I | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| LguI | GCTCTTC | 2 cut(s) | 1338, 1740 |
| LmnI | GCTCC | 2 cut(s) | 227, 1275 |
| Lsp1109I | GCAGC | 8 cut(s) | 829, 915, 918, 937, 1016, 1655, 1833, 1876 |
| LweI | GCATC | 3 cut(s) | 176, 817, 1046 |
| MaeI | CTAG | 5 cut(s) | 567, 801, 1464, 1568, 1574 |
| MaeII | ACGT | 2 cut(s) | 426, 1821 |
| MalI | GATC | 6 cut(s) | 303, 375, 474, 853, 1242, 1560 |
| MboI | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| MhlI | GDGCHC | 3 cut(s) | 545, 773, 808 |
| MluCI | AATT | 9 cut(s) | 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782 |
| MlyI | GAGTC | 4 cut(s) | 17, 148, 396, 719 |
| MnlI | CCTC | 5 cut(s) | 79, 289, 715, 1063, 1142 |
| Mph1103I | ATGCAT | 1 cut(s) | 169 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1013, 1251 |
| MslI | CAYNNNNRTG | 3 cut(s) | 222, 1592, 1598 |
| MspI | CCGG | 3 cut(s) | 355, 648, 1734 |
| MspR9I | CCNGG | 3 cut(s) | 355, 1541, 1611 |
| MvaI | CCWGG | 2 cut(s) | 1541, 1611 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 925, 1747, 1832 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NdeI | CATATG | 1 cut(s) | 418 |
| NdeII | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| NlaIII | CATG | 9 cut(s) | 70, 255, 689, 817, 836, 982, 1597, 1603, 1974 |
| NlaIV | GGNNCC | 1 cut(s) | 229 |
| NsbI | TGCGCA | 1 cut(s) | 831 |
| NsiI | ATGCAT | 1 cut(s) | 169 |
| NspI | RCATGY | 1 cut(s) | 70 |
| NspV | TTCGAA | 1 cut(s) | 391 |
| PagI | TCATGA | 1 cut(s) | 1970 |
| PceI | AGGCCT | 1 cut(s) | 1068 |
| PciSI | GCTCTTC | 2 cut(s) | 1338, 1740 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1013, 1251 |
| PfeI | GAWTC | 2 cut(s) | 393, 1814 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1546 |
| PfoI | TCCNGGA | 1 cut(s) | 1609 |
| PkrI | GCNGC | 8 cut(s) | 819, 930, 933, 952, 1031, 1645, 1848, 1891 |
| PleI | GAGTC | 4 cut(s) | 17, 148, 396, 719 |
| PpsI | GAGTC | 4 cut(s) | 17, 148, 396, 719 |
| PpuMI | RGGWCCY | 1 cut(s) | 1107 |
| Psp1406I | AACGTT | 1 cut(s) | 1821 |
| Psp5II | RGGWCCY | 1 cut(s) | 1107 |
| Psp6I | CCWGG | 2 cut(s) | 1539, 1609 |
| PspFI | CCCAGC | 1 cut(s) | 1032 |
| PspGI | CCWGG | 2 cut(s) | 1539, 1609 |
| PspN4I | GGNNCC | 1 cut(s) | 229 |
| PspPI | GGNCC | 2 cut(s) | 602, 1107 |
| PspPPI | RGGWCCY | 1 cut(s) | 1107 |
| PstI | CTGCAG | 5 cut(s) | 82, 680, 1459, 1851, 1894 |
| PstNI | CAGNNNCTG | 1 cut(s) | 925 |
| RsaI | GTAC | 5 cut(s) | 206, 457, 895, 1363, 1440 |
| RsaNI | GTAC | 5 cut(s) | 205, 456, 894, 1362, 1439 |
| RseI | CAYNNNNRTG | 3 cut(s) | 222, 1592, 1598 |
| SapI | GCTCTTC | 2 cut(s) | 1338, 1740 |
| SatI | GCNGC | 8 cut(s) | 818, 929, 932, 951, 1030, 1644, 1847, 1890 |
| Sau3AI | GATC | 6 cut(s) | 301, 373, 472, 851, 1240, 1558 |
| Sau96I | GGNCC | 2 cut(s) | 602, 1107 |
| SchI | GAGTC | 4 cut(s) | 17, 148, 396, 719 |
| ScrFI | CCNGG | 3 cut(s) | 355, 1541, 1611 |
| SduI | GDGCHC | 3 cut(s) | 545, 773, 808 |
| SfaNI | GCATC | 3 cut(s) | 176, 817, 1046 |
| SfcI | CTRYAG | 5 cut(s) | 78, 676, 1455, 1847, 1890 |
| SfuI | TTCGAA | 1 cut(s) | 391 |
| SinI | GGWCC | 1 cut(s) | 1107 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 222, 1592, 1598 |
| Sse9I | AATT | 9 cut(s) | 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782 |
| SseBI | AGGCCT | 1 cut(s) | 1068 |
| SspMI | CTAG | 5 cut(s) | 567, 801, 1464, 1568, 1574 |
| StuI | AGGCCT | 1 cut(s) | 1068 |
| StyD4I | CCNGG | 3 cut(s) | 353, 1539, 1609 |
| StyI | CCWWGG | 1 cut(s) | 1926 |
| TaaI | ACNGT | 5 cut(s) | 221, 388, 898, 1193, 1238 |
| TaiI | ACGT | 2 cut(s) | 429, 1824 |
| TaqI | TCGA | 9 cut(s) | 342, 391, 854, 1196, 1310, 1476, 1513, 1590, 1715 |
| TasI | AATT | 9 cut(s) | 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782 |
| TatI | WGTACW | 3 cut(s) | 204, 455, 893 |
| TfiI | GAWTC | 2 cut(s) | 393, 1814 |
| TscAI | CASTG | 3 cut(s) | 226, 846, 903 |
| TseI | GCWGC | 8 cut(s) | 817, 928, 931, 950, 1029, 1643, 1846, 1889 |
| TspDTI | ATGAA | 8 cut(s) | 37, 674, 773, 802, 1117, 1170, 1715, 1724 |
| TspGWI | ACGGA | 1 cut(s) | 721 |
| TspRI | CASTG | 3 cut(s) | 226, 846, 903 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1546 |
| VpaK11BI | GGWCC | 1 cut(s) | 1107 |
| XapI | RAATTY | 5 cut(s) | 44, 199, 235, 1177, 1673 |
| XceI | RCATGY | 1 cut(s) | 70 |
| XmiI | GTMKAC | 1 cut(s) | 319 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1013, 1251 |
| XspI | CTAG | 5 cut(s) | 567, 801, 1464, 1568, 1574 |
| Zsp2I | ATGCAT | 1 cut(s) | 169 |