pycom15g20610

WD40 repeats

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
14764199 .. 14767642
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20610.6

Sequence Viewer

Length: 1974 bp
ATGGTGAAGATACCATTTGTTGACTCAAAGATTACCATAGCAAAATTCATCACACAAAATACCCACATGCTAAGTTCTGCAGATGAGGACTACCTTCTGCTGGCGAAAAGCTTTCCATCTCTCCTTTCTTTTGAGACAAAACTGAAAGATGGGACTCAGTTAAATGCATCCCGTTTTACTGGATTTTCAAAAGTTAAAAATTTGTACATAACTGGACACAGTGATGGAGCCATAAATTTTTGGGATTTGTCATGTCCACTTTTAATACCAATTATATCATTAAAGCAACAGAGTGAGGATGATCTTTCTTTAAGTGGTATACCACTTACAGCGTTGGTTTTCGATTTGAACTCCCGGCTTCTTGTTTCTGGAGATCAGAGTGGAACAGTTCGAATCTTTAGACTCAAACCAGAACCATATGCCAACGTGAGCAGTTTCCTGTCTCTTCAAGGAAGTACAAAGAAAGGAAATGATCACATCATCCAAAGTGTGAAACTTTCTAAGGTTAATGGTTCTGTAATTTCTGTGAACATAAACCAGAGCACAGGACATCTTGCTGTCGGGTCTAGTAAAGGATATGTTTCGGTTATTGATATAGAAGGGCCAACTCTGTTATATCAAAAGCACATTGCAAGTGAAATATCCACCGGCATTGTCTCCCTGCATTTCCAAACCTGCAGTTTTCATGGTTTTGACAAGAACATCTTAGCAGTTGCAACAGAGGACTCATCCGTTTTGGCTCTTGATAGTGATAATGGAAACACATTGAGCACCAGTTTGGTTCATCCAAAGAAACCCACTAGAGCACTTTTCATGCAGCTTTTGGATGCGCATGATACACTGGTAAACAGATCGAATATATTGAATGGTCTTGATTTGATAAAAGGGAGTAGTACAGTGGACGACACCACACAAAAGCAGTTTCTGCTGCTGCTGTGTTCTGAGAAAGCTGCATACATATACTCCTTCACACATATCATGCAGGGAGTTAAGAAGGTAATCTACAAGAAGAAGTTCCAATCATCTTGCTGCTGGGCATCAACATTTCAAACCTCCAATGATTTAGGCCTTGTTCTCCTTTTTACAAGTGGAAAAATTGAAATAAGGTCCTTGCCAGATTTATCCTTCATAAAGGAGACTTCAATAAGAGGCTTCACATACTCCACTCCGAAACCAAATTCATTTTCTGACAGTTCGATATGTTCTTCGTGCGAAGGAGAACTTGTTATGGTGAACGGTGATCAGGAAATCTTTCTCTTTGCTCTTTCGCTCCACAACAAAAGCTTCGGGCTGTTAGACTTTTTCAACTCGACTTACCAGAAAGATTTGATAGTTTCACAAGAAGAGCTTGTCGCTGGATGTACCACTCCAAAGGAGAAGAAAAAGGGTATATTTAGCTCAGTCATTAAAGATATCGTGGGAAGCAAACCGAAGAATGTACCTGAGATAGAAACTGCAGACACTAGAGAAAGTATCGAAGAACTTTCAGCTATCTTTTCAACTGCTAACTTTCGAGTTGACGCTGAGAATACAAATCACCAGGCTGTGGATGATGATGATCTTCAGCTAGACCTAGATGACATTGACATCGACATGGACATGGACATTCCTGGAGAAAAACCGAAAGAGCAGAATATGTTGGCAGCTCTGAACAAGGAGAAGTTGACAAGCAAATTTATGGCCTTTAAAGGTAAAGTGATGAAACAGATGAAGTCGAAAAATGAGAAAAACTCCGGTAAGCAGGAAGAGCAACAGGATGAGAAGGTTGGTCAAGTTGACGAAATTAAGAAGCGATATGGATTTTCGTCAAGTGAATCAAACGTTGCTAAAATAGCACAAAGCAAGCTGCAGGAGAATACGAGAAAGTTGCAGGGCATTAACCTAAGAGCTGCAGATATGCAAGACACAGCTCAATCATTCTCATCCTTGGCGAAAGAAGTGTTGCGAACCGAACAGGATAGGCGAAACTCATGA

Protein Analysis

658

Amino Acids

72.63

Weight (kDa)

6.12

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 831
Acc36I ACCTGC 1 cut(s) 683
AccB7I CCANNNNNTGG 1 cut(s) 1546
AccI GTMKAC 1 cut(s) 319
AclI AACGTT 1 cut(s) 1821
AcsI RAATTY 5 cut(s) 44, 199, 235, 1177, 1673
AcuI CTGAAG 1 cut(s) 1547
AfaI GTAC 5 cut(s) 206, 457, 895, 1363, 1440
AfiI CCNNNNNNNGG 2 cut(s) 100, 1546
AgsI TTSAA 9 cut(s) 189, 349, 449, 865, 1049, 1100, 1143, 1306, 1500
AjnI CCWGG 2 cut(s) 1539, 1609
AjuI GAANNNNNNNTTGG 2 cut(s) 1168, 1200
Alw21I GWGCWC 3 cut(s) 545, 773, 808
Alw26I GTCTC 4 cut(s) 128, 447, 661, 1130
AlwNI CAGNNNCTG 1 cut(s) 925
AoxI GGCC 3 cut(s) 602, 1066, 1680
ApeKI GCWGC 8 cut(s) 817, 928, 931, 950, 1029, 1643, 1846, 1889
ApoI RAATTY 5 cut(s) 44, 199, 235, 1177, 1673
Asp700I GAANNNNTTC 2 cut(s) 1013, 1251
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 2 cut(s) 602, 1107
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 4 cut(s) 16, 1243, 1250, 1529
AsuII TTCGAA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 1107
BaeI ACNNNNGTAYC 2 cut(s) 828, 861
BarI GAAGNNNNNNTAC 2 cut(s) 986, 1018
Bbv12I GWGCWC 3 cut(s) 545, 773, 808
BbvI GCAGC 8 cut(s) 829, 915, 918, 937, 1016, 1655, 1833, 1876
BccI CCATC 3 cut(s) 124, 143, 218
BcgI CGANNNNNNTGC 2 cut(s) 1849, 1883
BciT130I CCWGG 2 cut(s) 1541, 1611
BclI TGATCA 2 cut(s) 472, 1240
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 4 cut(s) 128, 447, 661, 1130
BfaI CTAG 5 cut(s) 567, 801, 1464, 1568, 1574
BfmI CTRYAG 5 cut(s) 78, 676, 1455, 1847, 1890
BfuAI ACCTGC 1 cut(s) 683
BisI GCNGC 8 cut(s) 818, 929, 932, 951, 1030, 1644, 1847, 1890
BlsI GCNGC 8 cut(s) 819, 930, 933, 952, 1031, 1645, 1848, 1891
Bme1390I CCNGG 3 cut(s) 355, 1541, 1611
Bme18I GGWCC 1 cut(s) 1107
BmgT120I GGNCC 2 cut(s) 602, 1107
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 3 cut(s) 355, 1541, 1611
BmsI GCATC 3 cut(s) 176, 817, 1046
BplI GAGNNNNNCTC 2 cut(s) 1715, 1747
BpmI CTGGAG 2 cut(s) 390, 1632
Bpu14I TTCGAA 1 cut(s) 391
BpuMI CCSGG 1 cut(s) 355
BsaBI GATNNNNATC 1 cut(s) 1557
BsaJI CCNNGG 1 cut(s) 1926
BsaWI WCCGGW 1 cut(s) 1733
BsaXI ACNNNNNCTCC 4 cut(s) 947, 977, 1209, 1239
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 1546
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 4 cut(s) 184, 217, 774, 846
Bse3DI GCAATG 1 cut(s) 627
Bse8I GATNNNNATC 1 cut(s) 1557
BseBI CCWGG 2 cut(s) 1541, 1611
BseDI CCNNGG 1 cut(s) 1926
BseJI GATNNNNATC 1 cut(s) 1557
BseLI CCNNNNNNNGG 2 cut(s) 100, 1546
BseMI GCAATG 1 cut(s) 627
BseMII CTCAG 5 cut(s) 170, 933, 1413, 1434, 1515
BseNI ACTGG 4 cut(s) 184, 217, 774, 846
BseXI GCAGC 8 cut(s) 829, 915, 918, 937, 1016, 1655, 1833, 1876
BseYI CCCAGC 1 cut(s) 1032
BshFI GGCC 3 cut(s) 604, 1068, 1682
BsiHKAI GWGCWC 3 cut(s) 545, 773, 808
BsiSI CCGG 3 cut(s) 355, 648, 1734
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 100, 1546
BsmAI GTCTC 4 cut(s) 128, 447, 661, 1130
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 3 cut(s) 604, 1068, 1682
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 3 cut(s) 545, 773, 808
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
BspANI GGCC 3 cut(s) 604, 1068, 1682
BspCNI CTCAG 5 cut(s) 169, 934, 1412, 1435, 1516
BspHI TCATGA 1 cut(s) 1970
BspLI GGNNCC 1 cut(s) 229
BspMAI CTGCAG 5 cut(s) 82, 680, 1459, 1851, 1894
BspMI ACCTGC 1 cut(s) 683
BspQI GCTCTTC 2 cut(s) 1338, 1740
BspT104I TTCGAA 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 627
BsrFI RCCGGY 1 cut(s) 647
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 4 cut(s) 184, 217, 774, 846
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 1 cut(s) 1926
BssMI GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
BssNAI GTATAC 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 1926
Bst1107I GTATAC 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 1541, 1611
Bst4CI ACNGT 5 cut(s) 221, 388, 898, 1193, 1238
Bst6I CTCTTC 3 cut(s) 450, 1338, 1740
BstAPI GCANNNNNTGC 1 cut(s) 925
BstAUI TGTACA 1 cut(s) 204
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 102, 1844
BstDEI CTNAG 9 cut(s) 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 6 cut(s) 304, 376, 475, 854, 1243, 1561
BstMAI GTCTC 4 cut(s) 128, 447, 661, 1130
BstMBI GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
BstMWI GCNNNNNNNGC 3 cut(s) 925, 1747, 1832
BstNI CCWGG 2 cut(s) 1541, 1611
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 353, 1539, 1609
BstSFI CTRYAG 5 cut(s) 78, 676, 1455, 1847, 1890
BstV1I GCAGC 8 cut(s) 829, 915, 918, 937, 1016, 1655, 1833, 1876
BstZ17I GTATAC 1 cut(s) 320
BsuRI GGCC 3 cut(s) 604, 1068, 1682
BtsIMutI CAGTG 3 cut(s) 226, 839, 903
BveI ACCTGC 1 cut(s) 683
Cac8I GCNNGC 2 cut(s) 102, 1844
CaiI CAGNNNCTG 1 cut(s) 925
CciI TCATGA 1 cut(s) 1970
CfoI GCGC 1 cut(s) 832
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 2 cut(s) 602, 1107
CseI GACGC 1 cut(s) 1529
Csp6I GTAC 5 cut(s) 205, 456, 894, 1362, 1439
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 9 cut(s) 67, 252, 686, 814, 833, 979, 1594, 1600, 1971
CviQI GTAC 5 cut(s) 205, 456, 894, 1362, 1439
DdeI CTNAG 9 cut(s) 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883
DpnI GATC 6 cut(s) 303, 375, 474, 853, 1242, 1560
DpnII GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
DraI TTTAAA 1 cut(s) 1687
Eam1104I CTCTTC 3 cut(s) 450, 1338, 1740
EarI CTCTTC 3 cut(s) 450, 1338, 1740
Eco130I CCWWGG 1 cut(s) 1926
Eco147I AGGCCT 1 cut(s) 1068
Eco32I GATATC 1 cut(s) 1414
Eco47I GGWCC 1 cut(s) 1107
Eco57I CTGAAG 1 cut(s) 1547
EcoO109I RGGNCCY 1 cut(s) 1107
EcoRII CCWGG 2 cut(s) 1539, 1609
EcoRV GATATC 1 cut(s) 1414
EcoT14I CCWWGG 1 cut(s) 1926
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 1926
FaeI CATG 9 cut(s) 70, 255, 689, 817, 836, 982, 1597, 1603, 1974
FalI AAGNNNNNCTT 6 cut(s) 689, 721, 1206, 1238, 1332, 1364
FaqI GGGAC 1 cut(s) 166
FatI CATG 9 cut(s) 66, 251, 685, 813, 832, 978, 1593, 1599, 1970
FauNDI CATATG 1 cut(s) 418
FbaI TGATCA 2 cut(s) 472, 1240
FblI GTMKAC 1 cut(s) 319
Fnu4HI GCNGC 8 cut(s) 818, 929, 932, 951, 1030, 1644, 1847, 1890
Fsp4HI GCNGC 8 cut(s) 818, 929, 932, 951, 1030, 1644, 1847, 1890
FspAI RTGCGCAY 1 cut(s) 831
FspBI CTAG 5 cut(s) 567, 801, 1464, 1568, 1574
FspI TGCGCA 1 cut(s) 831
GlaI GCGC 1 cut(s) 831
GluI GCNGC 8 cut(s) 818, 929, 932, 951, 1030, 1644, 1847, 1890
GsaI CCCAGC 1 cut(s) 1036
GsuI CTGGAG 2 cut(s) 390, 1632
HaeIII GGCC 3 cut(s) 604, 1068, 1682
HapII CCGG 3 cut(s) 355, 648, 1734
HgaI GACGC 1 cut(s) 1529
HhaI GCGC 1 cut(s) 832
Hin1II CATG 9 cut(s) 70, 255, 689, 817, 836, 982, 1597, 1603, 1974
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 4 cut(s) 22, 1519, 1665, 1777
HindII GTYRAC 4 cut(s) 22, 1519, 1665, 1777
HindIII AAGCTT 2 cut(s) 109, 1282
HinfI GANTC 6 cut(s) 23, 154, 393, 402, 725, 1814
HpaII CCGG 3 cut(s) 355, 648, 1734
HphI GGTGA 4 cut(s) 16, 1243, 1250, 1529
Hpy188I TCNGA 5 cut(s) 378, 943, 1170, 1189, 1650
Hpy188III TCNNGA 5 cut(s) 369, 743, 872, 1244, 1971
HpyAV CCTTC 7 cut(s) 104, 593, 976, 988, 1135, 1208, 1756
HpyCH4III ACNGT 5 cut(s) 221, 388, 898, 1193, 1238
HpyCH4IV ACGT 2 cut(s) 426, 1821
HpyF10VI GCNNNNNNNGC 3 cut(s) 925, 1747, 1832
HpyF3I CTNAG 9 cut(s) 71, 156, 501, 706, 942, 1399, 1443, 1524, 1883
HpySE526I ACGT 2 cut(s) 426, 1821
Hsp92II CATG 9 cut(s) 70, 255, 689, 817, 836, 982, 1597, 1603, 1974
HspAI GCGC 1 cut(s) 830
Ksp22I TGATCA 2 cut(s) 472, 1240
Kzo9I GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
LguI GCTCTTC 2 cut(s) 1338, 1740
LmnI GCTCC 2 cut(s) 227, 1275
Lsp1109I GCAGC 8 cut(s) 829, 915, 918, 937, 1016, 1655, 1833, 1876
LweI GCATC 3 cut(s) 176, 817, 1046
MaeI CTAG 5 cut(s) 567, 801, 1464, 1568, 1574
MaeII ACGT 2 cut(s) 426, 1821
MalI GATC 6 cut(s) 303, 375, 474, 853, 1242, 1560
MboI GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
MhlI GDGCHC 3 cut(s) 545, 773, 808
MluCI AATT 9 cut(s) 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782
MlyI GAGTC 4 cut(s) 17, 148, 396, 719
MnlI CCTC 5 cut(s) 79, 289, 715, 1063, 1142
Mph1103I ATGCAT 1 cut(s) 169
MroXI GAANNNNTTC 2 cut(s) 1013, 1251
MslI CAYNNNNRTG 3 cut(s) 222, 1592, 1598
MspI CCGG 3 cut(s) 355, 648, 1734
MspR9I CCNGG 3 cut(s) 355, 1541, 1611
MvaI CCWGG 2 cut(s) 1541, 1611
MwoI GCNNNNNNNGC 3 cut(s) 925, 1747, 1832
NciI CCSGG 1 cut(s) 355
NdeI CATATG 1 cut(s) 418
NdeII GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
NlaIII CATG 9 cut(s) 70, 255, 689, 817, 836, 982, 1597, 1603, 1974
NlaIV GGNNCC 1 cut(s) 229
NsbI TGCGCA 1 cut(s) 831
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 70
NspV TTCGAA 1 cut(s) 391
PagI TCATGA 1 cut(s) 1970
PceI AGGCCT 1 cut(s) 1068
PciSI GCTCTTC 2 cut(s) 1338, 1740
PdmI GAANNNNTTC 2 cut(s) 1013, 1251
PfeI GAWTC 2 cut(s) 393, 1814
PflMI CCANNNNNTGG 1 cut(s) 1546
PfoI TCCNGGA 1 cut(s) 1609
PkrI GCNGC 8 cut(s) 819, 930, 933, 952, 1031, 1645, 1848, 1891
PleI GAGTC 4 cut(s) 17, 148, 396, 719
PpsI GAGTC 4 cut(s) 17, 148, 396, 719
PpuMI RGGWCCY 1 cut(s) 1107
Psp1406I AACGTT 1 cut(s) 1821
Psp5II RGGWCCY 1 cut(s) 1107
Psp6I CCWGG 2 cut(s) 1539, 1609
PspFI CCCAGC 1 cut(s) 1032
PspGI CCWGG 2 cut(s) 1539, 1609
PspN4I GGNNCC 1 cut(s) 229
PspPI GGNCC 2 cut(s) 602, 1107
PspPPI RGGWCCY 1 cut(s) 1107
PstI CTGCAG 5 cut(s) 82, 680, 1459, 1851, 1894
PstNI CAGNNNCTG 1 cut(s) 925
RsaI GTAC 5 cut(s) 206, 457, 895, 1363, 1440
RsaNI GTAC 5 cut(s) 205, 456, 894, 1362, 1439
RseI CAYNNNNRTG 3 cut(s) 222, 1592, 1598
SapI GCTCTTC 2 cut(s) 1338, 1740
SatI GCNGC 8 cut(s) 818, 929, 932, 951, 1030, 1644, 1847, 1890
Sau3AI GATC 6 cut(s) 301, 373, 472, 851, 1240, 1558
Sau96I GGNCC 2 cut(s) 602, 1107
SchI GAGTC 4 cut(s) 17, 148, 396, 719
ScrFI CCNGG 3 cut(s) 355, 1541, 1611
SduI GDGCHC 3 cut(s) 545, 773, 808
SfaNI GCATC 3 cut(s) 176, 817, 1046
SfcI CTRYAG 5 cut(s) 78, 676, 1455, 1847, 1890
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 1107
SmiMI CAYNNNNRTG 3 cut(s) 222, 1592, 1598
Sse9I AATT 9 cut(s) 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782
SseBI AGGCCT 1 cut(s) 1068
SspMI CTAG 5 cut(s) 567, 801, 1464, 1568, 1574
StuI AGGCCT 1 cut(s) 1068
StyD4I CCNGG 3 cut(s) 353, 1539, 1609
StyI CCWWGG 1 cut(s) 1926
TaaI ACNGT 5 cut(s) 221, 388, 898, 1193, 1238
TaiI ACGT 2 cut(s) 429, 1824
TaqI TCGA 9 cut(s) 342, 391, 854, 1196, 1310, 1476, 1513, 1590, 1715
TasI AATT 9 cut(s) 44, 199, 235, 270, 519, 1095, 1177, 1673, 1782
TatI WGTACW 3 cut(s) 204, 455, 893
TfiI GAWTC 2 cut(s) 393, 1814
TscAI CASTG 3 cut(s) 226, 846, 903
TseI GCWGC 8 cut(s) 817, 928, 931, 950, 1029, 1643, 1846, 1889
TspDTI ATGAA 8 cut(s) 37, 674, 773, 802, 1117, 1170, 1715, 1724
TspGWI ACGGA 1 cut(s) 721
TspRI CASTG 3 cut(s) 226, 846, 903
Van91I CCANNNNNTGG 1 cut(s) 1546
VpaK11BI GGWCC 1 cut(s) 1107
XapI RAATTY 5 cut(s) 44, 199, 235, 1177, 1673
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 319
XmnI GAANNNNTTC 2 cut(s) 1013, 1251
XspI CTAG 5 cut(s) 567, 801, 1464, 1568, 1574
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.