Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008728

Physical Location & Seq

Genomic Coordinates Forward (+)

64537549 .. 64539562

Gene Structure 2014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCCTATGATGATTGCTCAATTGAAAAGTATCTTCTACAGAGCCAATCTAAGTCACCAGCCTCGTTGCCGAAGGGTAGTGTGTGGTGTTTCGAATTTCAGCAGTTTCTTTGAAGGAAGTACAAAGAAAGAAAACGATATTGTTCAAAGCGTTAGACTAATGAAGGTTGATGGTTCTGTACTTTCTCTGAACATAAATCACAGCTCAAGACATCTTGCTGTGGGATCTAGTAAAGGACATGTTTCAGTTATTGATATAGAAGGGCCCACTCTATTATATAAAATCCACATTGCAAGTGAAATTTCTACCCGCATCATCTCTCTGCAGTTTGAAACCTGCAGTTTTCATGGTTTCGACAAGAATGTCTTAGCTGTTGCAACAGAGGACTCATCTGTTTTGGCTCTTGATAGTGATAATGGAAACACATTGAGCACTAGTCTGGTTCATCCCAAGAAACCCACTAGAGCACTTTTAATGCAGATCTTGGACTCCAGCAAAGGGAGTAGTGTTGAGGATGCCATGCAAAAGCAGTCTTTGCTACTGCTATGTTCCGAAAAAGCAGCATACATATATTCCTTCACACATGTCATGCAGGGAGTTAAGAAGGTAATATACAAGAAGAAATTTCAATCATCTTGTTGCTGGGCATTGACATTCTACACCTCTGATGTTGGCCTTATACTCGTTTTTACAACTGGAAAAATTGAGATAAGGTCCAACCATGACTTATCTTTGATAAAGGAGACTTCAATAAGGGCCTTCACATATTCCACGTCAAAACTAAATTCACATGCTGGCAATTCGATATGCTCTTCATCCGAAGGAGAACTTGTTATGGTGAACAGTGATCAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGGCTTTTAGACTCTTTCAACTTGACGTACCAGAAAGATCTGATGGTTTCACAAGAAGAGCTTACATCAAGACGCATCATTCAAAAGGAAAAGAAAAAGGGTATGTTTAGTTCTGTTCTTAAAGATATTGTGGGAAGTAAAGGGAAGAATGTCCCTGAGATGGAAAATGAAGATACTAAAGAAAGTATTGAAGAACTTTCAAAAATCTTTTCGACTGCTAATTTCCAATTTGATGCTGAGAACACAGACAACCAGGCCATGGGTGTAGATGATCAGTTAGATATAGGTATTGTAAACATAAAAGTTTTCTTGCAACCAGGCCATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

407

Amino Acids

45.35

Weight (kDa)

7.63

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35560 AT4G35560
fragaria_vesca	FvH4_1g10310
malus_domestica	MD15G1231200.v1.1
prunus_persica	Prupe.7G183000_v2.0.a1
pyrus_communis	pycom15g20610
rosa_chinensis	RchiOBHm_Chr2g0097151
rosa_laevigata	RLG00000016707
rosa_multiflora	Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144930
rosa_rugosa	Rorug02G0064700.1 Rorug02G0064800
rosa_samantha	Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900
rosa_wichuraiana	Rw2G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	1153, 1217
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	94, 300, 623, 784
AfaI	GTAC	3 cut(s)	121, 180, 923
AfiI	CCNNNNNNNGG	4 cut(s)	498, 1054, 1153, 1217
AflIII	ACRYGT	2 cut(s)	238, 583
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	774
AjnI	CCWGG	2 cut(s)	1146, 1210
AluBI	AGCT	4 cut(s)	204, 371, 891, 955
AluI	AGCT	4 cut(s)	204, 371, 891, 955
Alw21I	GWGCWC	2 cut(s)	434, 469
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	5 cut(s)	263, 673, 756, 1149, 1213
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	4 cut(s)	94, 300, 623, 784
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	4 cut(s)	263, 264, 714, 756
AsuHPI	GGTGA	2 cut(s)	47, 850
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	596, 628
Bbv12I	GWGCWC	2 cut(s)	434, 469
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	3 cut(s)	164, 931, 1048
BciT130I	CCWGG	2 cut(s)	1148, 1212
BclI	TGATCA	2 cut(s)	847, 1165
BcoDI	GTCTC	1 cut(s)	737
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	3 cut(s)	228, 435, 462
BfmI	CTRYAG	3 cut(s)	37, 323, 337
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	2 cut(s)	480, 931
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	1148, 1212
Bme18I	GGWCC	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	4 cut(s)	263, 264, 714, 756
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	1148, 1212
BmsI	GCATC	4 cut(s)	321, 505, 978, 1117
BpmI	CTGGAG	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	1152, 1216
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	4 cut(s)	498, 1054, 1153, 1217
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	1148, 1212
BseDI	CCNNGG	2 cut(s)	1152, 1216
BseGI	GGATG	3 cut(s)	445, 520, 815
BseLI	CCNNNNNNNGG	4 cut(s)	498, 1054, 1153, 1217
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	1041, 1122
BseNI	ACTGG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	642
BshFI	GGCC	5 cut(s)	265, 675, 758, 1151, 1215
BsiHKAI	GWGCWC	2 cut(s)	434, 469
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	4 cut(s)	498, 1054, 1153, 1217
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	1031
BsnI	GGCC	5 cut(s)	265, 675, 758, 1151, 1215
Bsp119I	TTCGAA	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	267, 434, 469
Bsp143I	GATC	5 cut(s)	224, 480, 847, 931, 1165
Bsp19I	CCATGG	2 cut(s)	1152, 1216
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	5 cut(s)	265, 675, 758, 1151, 1215
BspCNI	CTCAG	2 cut(s)	1042, 1123
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	2 cut(s)	327, 341
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	2 cut(s)	817, 945
BspT104I	TTCGAA	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	1152, 1216
BssMI	GATC	5 cut(s)	224, 480, 847, 931, 1165
BssT1I	CCWWGG	2 cut(s)	1152, 1216
Bst2UI	CCWGG	2 cut(s)	1148, 1212
Bst4CI	ACNGT	1 cut(s)	845
Bst6I	CTCTTC	3 cut(s)	817, 869, 945
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	796
BstDEI	CTNAG	4 cut(s)	50, 367, 1050, 1131
BstDSI	CCRYGG	2 cut(s)	1152, 1216
BstF5I	GGATG	3 cut(s)	445, 520, 815
BstKTI	GATC	5 cut(s)	227, 483, 850, 934, 1168
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	5 cut(s)	224, 480, 847, 931, 1165
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNI	CCWGG	2 cut(s)	1148, 1212
BstNSI	RCATGY	3 cut(s)	242, 587, 794
BstSCI	CCNGG	2 cut(s)	1146, 1210
BstSFI	CTRYAG	3 cut(s)	37, 323, 337
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	224, 480, 931
BstYI	RGATCY	3 cut(s)	224, 480, 931
BsuRI	GGCC	5 cut(s)	265, 675, 758, 1151, 1215
BtgI	CCRYGG	2 cut(s)	1152, 1216
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	3 cut(s)	445, 520, 815
BtsIMutI	CAGTG	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	796
Cfr13I	GGNCC	4 cut(s)	263, 264, 714, 756
CseI	GACGC	1 cut(s)	975
Csp6I	GTAC	3 cut(s)	120, 179, 922
CviAII	CATG	9 cut(s)	239, 347, 520, 584, 589, 722, 791, 1153, 1217
CviQI	GTAC	3 cut(s)	120, 179, 922
DdeI	CTNAG	4 cut(s)	50, 367, 1050, 1131
DpnI	GATC	5 cut(s)	226, 482, 849, 933, 1167
DpnII	GATC	5 cut(s)	224, 480, 847, 931, 1165
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	3 cut(s)	817, 869, 945
EarI	CTCTTC	3 cut(s)	817, 869, 945
Eco130I	CCWWGG	2 cut(s)	1152, 1216
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	263, 756
EcoRII	CCWGG	2 cut(s)	1146, 1210
EcoT14I	CCWWGG	2 cut(s)	1152, 1216
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	1152, 1216
FaeI	CATG	9 cut(s)	242, 350, 523, 587, 592, 725, 794, 1156, 1220
FalI	AAGNNNNNCTT	8 cut(s)	350, 382, 813, 845, 875, 907, 939, 971
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	9 cut(s)	238, 346, 519, 583, 588, 721, 790, 1152, 1216
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	847, 1165
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	3 cut(s)	432, 527, 802
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	228, 435, 462
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	5 cut(s)	265, 675, 758, 1151, 1215
HgaI	GACGC	1 cut(s)	975
Hin1II	CATG	9 cut(s)	242, 350, 523, 587, 592, 725, 794, 1156, 1220
HindIII	AAGCTT	1 cut(s)	889
HinfI	GANTC	3 cut(s)	386, 488, 905
HphI	GGTGA	2 cut(s)	47, 850
Hpy166II	GTNNAC	2 cut(s)	841, 1189
Hpy188I	TCNGA	5 cut(s)	189, 553, 667, 820, 936
Hpy188III	TCNNGA	5 cut(s)	207, 404, 851, 880, 963
Hpy8I	GTNNAC	2 cut(s)	841, 1189
HpyAV	CCTTC	8 cut(s)	66, 107, 157, 254, 586, 598, 769, 815
HpyCH4III	ACNGT	1 cut(s)	845
HpyCH4IV	ACGT	2 cut(s)	773, 920
HpyCH4V	TGCA	8 cut(s)	293, 325, 339, 377, 478, 523, 592, 1207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	4 cut(s)	50, 367, 1050, 1131
HpySE526I	ACGT	2 cut(s)	773, 920
Hsp92II	CATG	9 cut(s)	242, 350, 523, 587, 592, 725, 794, 1156, 1220
Ksp22I	TGATCA	2 cut(s)	847, 1165
Kzo9I	GATC	5 cut(s)	224, 480, 847, 931, 1165
LguI	GCTCTTC	2 cut(s)	817, 945
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	4 cut(s)	321, 505, 978, 1117
MaeI	CTAG	3 cut(s)	228, 435, 462
MaeII	ACGT	2 cut(s)	773, 920
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	226, 482, 849, 933, 1167
MboI	GATC	5 cut(s)	224, 480, 847, 931, 1165
MboII	GAAGA	8 cut(s)	25, 631, 804, 856, 962, 1051, 1076, 1097
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	3 cut(s)	224, 480, 931
MhlI	GDGCHC	3 cut(s)	267, 434, 469
MluCI	AATT	9 cut(s)	20, 94, 300, 623, 702, 784, 799, 1114, 1121
MlyI	GAGTC	3 cut(s)	380, 482, 899
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	4 cut(s)	72, 376, 505, 673
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	3 cut(s)	473, 600, 1014
MspR9I	CCNGG	2 cut(s)	1148, 1212
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	1148, 1212
MwoI	GCNNNNNNNGC	1 cut(s)	535
NcoI	CCATGG	2 cut(s)	1152, 1216
NdeII	GATC	5 cut(s)	224, 480, 847, 931, 1165
NlaIII	CATG	9 cut(s)	242, 350, 523, 587, 592, 725, 794, 1156, 1220
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	3 cut(s)	242, 587, 794
NspV	TTCGAA	1 cut(s)	92
PciI	ACATGT	2 cut(s)	238, 583
PciSI	GCTCTTC	2 cut(s)	817, 945
PdmI	GAANNNNTTC	1 cut(s)	858
PflMI	CCANNNNNTGG	2 cut(s)	1153, 1217
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	3 cut(s)	380, 482, 899
PpsI	GAGTC	3 cut(s)	380, 482, 899
PscI	ACATGT	2 cut(s)	238, 583
Psp6I	CCWGG	2 cut(s)	1146, 1210
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	2 cut(s)	1146, 1210
PspN4I	GGNNCC	1 cut(s)	265
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 714, 756
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PstI	CTGCAG	2 cut(s)	327, 341
PsuI	RGATCY	3 cut(s)	224, 480, 931
RsaI	GTAC	3 cut(s)	121, 180, 923
RsaNI	GTAC	3 cut(s)	120, 179, 922
SapI	GCTCTTC	2 cut(s)	817, 945
SaqAI	TTAA	3 cut(s)	473, 600, 1014
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	5 cut(s)	224, 480, 847, 931, 1165
Sau96I	GGNCC	4 cut(s)	263, 264, 714, 756
SchI	GAGTC	3 cut(s)	380, 482, 899
ScrFI	CCNGG	2 cut(s)	1148, 1212
SduI	GDGCHC	3 cut(s)	267, 434, 469
SfaNI	GCATC	4 cut(s)	321, 505, 978, 1117
SfcI	CTRYAG	3 cut(s)	37, 323, 337
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	9 cut(s)	20, 94, 300, 623, 702, 784, 799, 1114, 1121
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	3 cut(s)	228, 435, 462
StyD4I	CCNGG	2 cut(s)	1146, 1210
StyI	CCWWGG	2 cut(s)	1152, 1216
TaaI	ACNGT	1 cut(s)	845
TaiI	ACGT	2 cut(s)	776, 923
TaqI	TCGA	4 cut(s)	92, 354, 803, 1106
TasI	AATT	9 cut(s)	20, 94, 300, 623, 702, 784, 799, 1114, 1121
TatI	WGTACW	2 cut(s)	119, 178
Tru1I	TTAA	3 cut(s)	473, 600, 1014
Tru9I	TTAA	3 cut(s)	473, 600, 1014
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	5 cut(s)	176, 335, 434, 804, 1077
TspRI	CASTG	1 cut(s)	850
Van91I	CCANNNNNTGG	2 cut(s)	1153, 1217
VpaK11BI	GGWCC	1 cut(s)	714
XapI	RAATTY	4 cut(s)	94, 300, 623, 784
XceI	RCATGY	3 cut(s)	242, 587, 794
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	3 cut(s)	228, 435, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.