WD40 repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35560 AT4G35560 |
| fragaria_vesca | FvH4_1g10310 |
| malus_domestica | MD15G1231200.v1.1 |
| prunus_persica | Prupe.7G183000_v2.0.a1 |
| pyrus_communis | pycom15g20610 |
| rosa_chinensis | RchiOBHm_Chr2g0097151 |
| rosa_laevigata | RLG00000016707 |
| rosa_multiflora | Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011 |
| rosa_roxburghii | Rroxscaffold_2G00144930 |
| rosa_rugosa | Rorug02G0064700.1 Rorug02G0064800 |
| rosa_samantha | Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900 |
| rosa_wichuraiana | Rw2G008700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 397 |
| Acc36I | ACCTGC | 1 cut(s) | 220 |
| AciI | CCGC | 1 cut(s) | 44 |
| AclI | AACGTT | 1 cut(s) | 119 |
| AcsI | RAATTY | 1 cut(s) | 16 |
| AcuI | CTGAAG | 2 cut(s) | 45, 266 |
| AfaI | GTAC | 1 cut(s) | 53 |
| AgsI | TTSAA | 2 cut(s) | 244, 324 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 2 cut(s) | 74, 158 |
| AluI | AGCT | 2 cut(s) | 74, 158 |
| Alw26I | GTCTC | 1 cut(s) | 116 |
| ApoI | RAATTY | 1 cut(s) | 16 |
| AspLEI | GCGC | 1 cut(s) | 200 |
| AspS9I | GGNCC | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 1 cut(s) | 58 |
| AvaII | GGWCC | 1 cut(s) | 374 |
| BauI | CACGAG | 1 cut(s) | 365 |
| BbvCI | CCTCAGC | 1 cut(s) | 63 |
| BccI | CCATC | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 116 |
| BfuAI | ACCTGC | 1 cut(s) | 220 |
| Bme18I | GGWCC | 1 cut(s) | 374 |
| BmgT120I | GGNCC | 1 cut(s) | 374 |
| BmsI | GCATC | 2 cut(s) | 209, 309 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 96, 128 |
| Bpu10I | CCTNAGC | 2 cut(s) | 63, 291 |
| BsaI | GGTCTC | 1 cut(s) | 116 |
| BseMII | CTCAG | 2 cut(s) | 77, 282 |
| BsgI | GTGCAG | 1 cut(s) | 247 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BsmAI | GTCTC | 1 cut(s) | 116 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| Bso31I | GGTCTC | 1 cut(s) | 116 |
| Bsp1407I | TGTACA | 1 cut(s) | 51 |
| BspACI | CCGC | 1 cut(s) | 44 |
| BspCNI | CTCAG | 2 cut(s) | 76, 283 |
| BspMI | ACCTGC | 1 cut(s) | 220 |
| BspTNI | GGTCTC | 1 cut(s) | 116 |
| BsrGI | TGTACA | 1 cut(s) | 51 |
| BssSI | CACGAG | 1 cut(s) | 365 |
| Bst2BI | CACGAG | 1 cut(s) | 365 |
| BstAUI | TGTACA | 1 cut(s) | 51 |
| BstC8I | GCNNGC | 1 cut(s) | 335 |
| BstDEI | CTNAG | 2 cut(s) | 63, 291 |
| BstHHI | GCGC | 1 cut(s) | 200 |
| BstMAI | GTCTC | 1 cut(s) | 116 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 339 |
| BtsI | GCAGTG | 1 cut(s) | 39 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| BveI | ACCTGC | 1 cut(s) | 220 |
| Cac8I | GCNNGC | 1 cut(s) | 335 |
| CfoI | GCGC | 1 cut(s) | 200 |
| Cfr13I | GGNCC | 1 cut(s) | 374 |
| Csp6I | GTAC | 1 cut(s) | 52 |
| CviAII | CATG | 2 cut(s) | 307, 382 |
| CviJI | RGCY | 4 cut(s) | 67, 74, 158, 295 |
| CviKI_1 | RGCY | 4 cut(s) | 67, 74, 158, 295 |
| CviQI | GTAC | 1 cut(s) | 52 |
| DdeI | CTNAG | 2 cut(s) | 63, 291 |
| Eco31I | GGTCTC | 1 cut(s) | 116 |
| Eco47I | GGWCC | 1 cut(s) | 374 |
| Eco57I | CTGAAG | 2 cut(s) | 45, 266 |
| EcoRI | GAATTC | 1 cut(s) | 16 |
| FaeI | CATG | 2 cut(s) | 310, 385 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| FatI | CATG | 2 cut(s) | 306, 381 |
| GlaI | GCGC | 1 cut(s) | 199 |
| HhaI | GCGC | 1 cut(s) | 200 |
| Hin1II | CATG | 2 cut(s) | 310, 385 |
| Hin6I | GCGC | 1 cut(s) | 198 |
| HinP1I | GCGC | 1 cut(s) | 198 |
| HphI | GGTGA | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| HpyAV | CCTTC | 1 cut(s) | 166 |
| HpyCH4IV | ACGT | 1 cut(s) | 119 |
| HpyCH4V | TGCA | 4 cut(s) | 229, 264, 300, 381 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 339 |
| HpyF3I | CTNAG | 2 cut(s) | 63, 291 |
| HpySE526I | ACGT | 1 cut(s) | 119 |
| Hsp92II | CATG | 2 cut(s) | 310, 385 |
| HspAI | GCGC | 1 cut(s) | 198 |
| LpnPI | CCDG | 5 cut(s) | 18, 144, 215, 251, 303 |
| LweI | GCATC | 2 cut(s) | 209, 309 |
| MaeII | ACGT | 1 cut(s) | 119 |
| MboII | GAAGA | 1 cut(s) | 312 |
| MluCI | AATT | 1 cut(s) | 16 |
| MnlI | CCTC | 2 cut(s) | 72, 78 |
| MslI | CAYNNNNRTG | 2 cut(s) | 44, 305 |
| MspA1I | CMGCKG | 2 cut(s) | 74, 158 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 339 |
| NlaIII | CATG | 2 cut(s) | 310, 385 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PsiI | TTATAA | 1 cut(s) | 397 |
| Psp1406I | AACGTT | 1 cut(s) | 119 |
| PspPI | GGNCC | 1 cut(s) | 374 |
| PvuII | CAGCTG | 2 cut(s) | 74, 158 |
| RsaI | GTAC | 1 cut(s) | 53 |
| RsaNI | GTAC | 1 cut(s) | 52 |
| RseI | CAYNNNNRTG | 2 cut(s) | 44, 305 |
| Sau96I | GGNCC | 1 cut(s) | 374 |
| SetI | ASST | 5 cut(s) | 76, 122, 160, 234, 329 |
| SfaNI | GCATC | 2 cut(s) | 209, 309 |
| SinI | GGWCC | 1 cut(s) | 374 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 44, 305 |
| Sse9I | AATT | 1 cut(s) | 16 |
| SsiI | CCGC | 1 cut(s) | 44 |
| SspI | AATATT | 1 cut(s) | 99 |
| TaiI | ACGT | 1 cut(s) | 122 |
| TaqI | TCGA | 3 cut(s) | 20, 181, 303 |
| TasI | AATT | 1 cut(s) | 16 |
| TatI | WGTACW | 1 cut(s) | 51 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TspDTI | ATGAA | 1 cut(s) | 204 |
| TspRI | CASTG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 374 |
| XapI | RAATTY | 1 cut(s) | 16 |