Rmu_sc0001182.1_g000007

WD40 repeats

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001182.1
Physical Location & Seq
Forward (+)
32289 .. 36357
4069 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001182.1_g000007.1.cds

Sequence Viewer

Length: 2406 bp
atgaggcaggtaatcctgttgaatgagcatactgaagtccgcactattagattaggacttcagttgcctgagccttgcatcgacatggagattatttcttcaacctttagcgagcaaagcaaacataaacaagagtgctttcttgtgcttggtaattcaggacatctttatgcctatgatgattgctcaattgaaaagtatcttctacagagccaatctaagtcaccagcctcgttgccgaaggaagtcatggtgaagattccatttgttgattcaagcattactgtatcaaaatttatcacagatgataccaacatgtcaacttctacagacgaggaataccttctcctggccaaaagcattccatctctcctttctttcgagacaaaaccaaaggatggaagtcacttaaatgcagcccgttttagtggcttttcgaaagttaaaaatctttacataactggacatggtgacggaggcataaatttttgggatttgtcatcgccacttttagtacccattttatcattgaagcagcagagtgaagaagatctctctttaagtggtatagcactcacagctttgttttttgatggaaactctcgacttcttgtttctggagatcaaagtggaacggttcggatctttagatttaaacctgaaccgtatgcgaatttcagcagtttctttcaaggaagtacaaagaaaggaaacgatattgttcaaagcgttagactaatgaaggttgatggttctgtactttctctgaacataaatcacagctcaagacatcttgctgtgggatctagtaaaggacatgtttcagttattgatatagaagggcccactctattatatgaaagccacattgcaagtgaaatttctaccggcatcatctctctgcagtttgaaacctgcagttttcatggtttcgacaagaatgtcttagctgttgcaacagaggactcatctgttttggctcttgatagtgataatggaaacacattgagcactagtctggttcatcccaagaaacccactagagcactttttatgcagatcttggactccagcaaagggagtagtgttgaggatgccatgcaaaagcagtctttgctactgctatgttccgaaaaagcagcatacatatattccttcacacatgtcatgcagggagttaagaaggtaatatacaagaagaaatttcaatcatcttgttgctgggcatcaacattctacacctctgatgttggccttatactcgtttttacaactggaaaaattgagataaggtccttgcatgaaaaagcagcatacatatattccttcacacatgtcatgcagggagttaagaaggtaatatacaagaagaaatttcaatcatcttgttgctgggcatcaacattctacacctctgatgttggccttatactcgtttttacaactggaaaaattgagataaggtccttgcatgacttatctttgataaaggagacttcaataaggggcttcacatactccacatcaaaactaaattcacatgctggcaattcgatatgctcttcatccgaaggagaacttgttatggtgaacagtgatcaggaaatctttctcttctctttctcactccagaagcaaggctttaggcttttagactctttcaacttgacgtaccagaaagatctgatggtttcacaagaagagcttacatcaggacgcatcattcaaaaggaaaagaaaaagggtatgtttagttctgttcttaaagatattgtgggaagtaaagggaagaatgtccctgagatggaaaatgaagatactaaagaaagtattgaagaactttcaaaaatcttttcaactgctaatttccaatttgatgctgagaacacagacaaccaggccatgggtgaagatgatgatcagttagatataggtattctaaacataaaagtgtgtcatttcaatatgaatggagtagagaaccaggccatgggtgaagatgatgatcagttagatatagatgatatcgagattgacattcctggagaaaaaccgaaagagcagaatatgttggcagctcttaataaggaaaaactggcaagcaagtttatggcctttaaaggtaaagtactgaaacaaatgaagtctaagaatgagaaaaatcccctaaaggaagagcaaccggatgagaaggttggctctgttgatgaaattaagagaagatacggattttcatctgctgagacaacaaatgttgctaaaatagcagaaagtaagcttcaggagaatacaagaaagttgcaggggataaacttgagaactacagagatgcaagacacagctagatcattttcatccttggcaaaacaagtgttacgaactgaacaggatagacgagcctcataa

Protein Analysis

801

Amino Acids

89.26

Weight (kDa)

6.02

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 941
Acc36I ACCTGC 1 cut(s) 923
AccB7I CCANNNNNTGG 3 cut(s) 398, 1903, 1990
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 650, 811
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 7 cut(s) 293, 484, 673, 879, 1202, 1373, 1534
AcuI CTGAAG 3 cut(s) 44, 54, 2264
AfaI GTAC 5 cut(s) 516, 700, 759, 1673, 2130
AfiI CCNNNNNNNGG 6 cut(s) 349, 398, 1077, 1804, 1903, 1990
AflIII ACRYGT 4 cut(s) 315, 817, 1162, 1333
AhlI ACTAGT 1 cut(s) 1013
AjnI CCWGG 4 cut(s) 348, 1896, 1983, 2041
AluBI AGCT 7 cut(s) 581, 783, 950, 1705, 2078, 2278, 2342
AluI AGCT 7 cut(s) 581, 783, 950, 1705, 2078, 2278, 2342
Alw21I GWGCWC 2 cut(s) 1013, 1048
Alw26I GTCTC 3 cut(s) 377, 1487, 2237
AlwI GGATC 2 cut(s) 650, 811
AoxI GGCC 7 cut(s) 351, 842, 1252, 1423, 1899, 1986, 2112
ApaI GGGCCC 1 cut(s) 846
ApeKI GCWGC 5 cut(s) 416, 535, 1139, 1310, 2075
ApoI RAATTY 7 cut(s) 293, 484, 673, 879, 1202, 1373, 1534
Asp700I GAANNNNTTC 2 cut(s) 342, 1608
AspS9I GGNCC 4 cut(s) 842, 843, 1293, 1464
AsuHPI GGTGA 6 cut(s) 216, 265, 482, 1600, 1919, 2006
AsuII TTCGAA 1 cut(s) 437
AvaII GGWCC 2 cut(s) 1293, 1464
BaeGI GKGCMC 1 cut(s) 846
BalI TGGCCA 1 cut(s) 353
BanII GRGCYC 1 cut(s) 846
BarI GAAGNNNNNNTAC 4 cut(s) 1175, 1207, 1346, 1378
Bbv12I GWGCWC 2 cut(s) 1013, 1048
BbvI GCAGC 5 cut(s) 428, 547, 1151, 1322, 2087
BccI CCATC 6 cut(s) 373, 392, 587, 743, 1681, 1798
BciT130I CCWGG 4 cut(s) 350, 1898, 1985, 2043
BclI TGATCA 3 cut(s) 1597, 1918, 2005
BcoDI GTCTC 3 cut(s) 377, 1487, 2237
BcuI ACTAGT 1 cut(s) 1013
BfaI CTAG 4 cut(s) 807, 1014, 1041, 2343
BfmI CTRYAG 5 cut(s) 206, 327, 902, 916, 2322
BfuAI ACCTGC 1 cut(s) 923
BglII AGATCT 3 cut(s) 550, 1059, 1681
BisI GCNGC 5 cut(s) 417, 536, 1140, 1311, 2076
BlsI GCNGC 5 cut(s) 418, 537, 1141, 1312, 2077
BmcAI AGTACT 1 cut(s) 2130
Bme1390I CCNGG 4 cut(s) 350, 1898, 1985, 2043
Bme18I GGWCC 2 cut(s) 1293, 1464
BmgT120I GGNCC 4 cut(s) 842, 843, 1293, 1464
BmiI GGNNCC 1 cut(s) 844
BmrFI CCNGG 4 cut(s) 350, 1898, 1985, 2043
BmsI GCATC 8 cut(s) 87, 900, 1084, 1235, 1406, 1728, 1867, 2319
BpmI CTGGAG 4 cut(s) 639, 1054, 1613, 2064
Bpu10I CCTNAGC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 437
BpuEI CTTGAG 2 cut(s) 769, 2335
BsaBI GATNNNNATC 3 cut(s) 1917, 2004, 2233
BsaJI CCNNGG 3 cut(s) 1902, 1989, 2358
BsaWI WCCGGW 1 cut(s) 2182
BsaXI ACNNNNNCTCC 2 cut(s) 1566, 1596
Bsc4I CCNNNNNNNGG 6 cut(s) 349, 398, 1077, 1804, 1903, 1990
Bse118I RCCGGY 1 cut(s) 887
Bse1I ACTGG 4 cut(s) 466, 1279, 1450, 2100
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 3 cut(s) 1917, 2004, 2233
BseBI CCWGG 4 cut(s) 350, 1898, 1985, 2043
BseDI CCNNGG 3 cut(s) 1902, 1989, 2358
BseGI GGATG 6 cut(s) 403, 1024, 1099, 1565, 2191, 2354
BseJI GATNNNNATC 3 cut(s) 1917, 2004, 2233
BseLI CCNNNNNNNGG 6 cut(s) 349, 398, 1077, 1804, 1903, 1990
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 4 cut(s) 60, 1791, 1872, 2232
BseNI ACTGG 4 cut(s) 466, 1279, 1450, 2100
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 5 cut(s) 428, 547, 1151, 1322, 2087
BseYI CCCAGC 2 cut(s) 1221, 1392
BshFI GGCC 7 cut(s) 353, 844, 1254, 1425, 1901, 1988, 2114
BsiHKAI GWGCWC 2 cut(s) 1013, 1048
BsiSI CCGG 2 cut(s) 888, 2183
BslFI GGGAC 1 cut(s) 1781
BslI CCNNNNNNNGG 6 cut(s) 349, 398, 1077, 1804, 1903, 1990
BsmAI GTCTC 3 cut(s) 377, 1487, 2237
BsmFI GGGAC 1 cut(s) 1781
BsmI GAATGC 1 cut(s) 360
BsnI GGCC 7 cut(s) 353, 844, 1254, 1425, 1901, 1988, 2114
Bsp119I TTCGAA 1 cut(s) 437
Bsp120I GGGCCC 1 cut(s) 842
Bsp1286I GDGCHC 3 cut(s) 846, 1013, 1048
Bsp19I CCATGG 2 cut(s) 1902, 1989
BspACI CCGC 1 cut(s) 40
BspANI GGCC 7 cut(s) 353, 844, 1254, 1425, 1901, 1988, 2114
BspCNI CTCAG 4 cut(s) 61, 1792, 1873, 2233
BspLI GGNNCC 1 cut(s) 844
BspMAI CTGCAG 2 cut(s) 906, 920
BspMI ACCTGC 1 cut(s) 923
BspPI GGATC 2 cut(s) 650, 811
BspQI GCTCTTC 3 cut(s) 1567, 1695, 2169
BspT104I TTCGAA 1 cut(s) 437
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 887
BsrI ACTGG 4 cut(s) 466, 1279, 1450, 2100
BssAI RCCGGY 1 cut(s) 887
BssECI CCNNGG 3 cut(s) 1902, 1989, 2358
BssT1I CCWWGG 3 cut(s) 1902, 1989, 2358
Bst2UI CCWGG 4 cut(s) 350, 1898, 1985, 2043
Bst4CI ACNGT 4 cut(s) 286, 637, 666, 1595
Bst6I CTCTTC 4 cut(s) 1567, 1619, 1695, 2169
BstAPI GCANNNNNTGC 1 cut(s) 1114
BstBI TTCGAA 1 cut(s) 437
BstC8I GCNNGC 3 cut(s) 113, 1546, 2101
BstDEI CTNAG 7 cut(s) 69, 219, 946, 1800, 1881, 2148, 2241
BstDSI CCRYGG 2 cut(s) 1902, 1989
BstF5I GGATG 6 cut(s) 403, 1024, 1099, 1565, 2191, 2354
BstMAI GTCTC 3 cut(s) 377, 1487, 2237
BstMWI GCNNNNNNNGC 4 cut(s) 117, 578, 1114, 2264
BstNI CCWGG 4 cut(s) 350, 1898, 1985, 2043
BstNSI RCATGY 5 cut(s) 319, 821, 1166, 1337, 1544
BstSCI CCNGG 4 cut(s) 348, 1896, 1983, 2041
BstSFI CTRYAG 5 cut(s) 206, 327, 902, 916, 2322
BstSLI GKGCMC 1 cut(s) 846
BstV1I GCAGC 5 cut(s) 428, 547, 1151, 1322, 2087
BstX2I RGATCY 5 cut(s) 550, 642, 803, 1059, 1681
BstYI RGATCY 5 cut(s) 550, 642, 803, 1059, 1681
BsuRI GGCC 7 cut(s) 353, 844, 1254, 1425, 1901, 1988, 2114
BtgI CCRYGG 2 cut(s) 1902, 1989
BtgZI GCGATG 1 cut(s) 486
BtsCI GGATG 6 cut(s) 403, 1024, 1099, 1565, 2191, 2354
BtsIMutI CAGTG 1 cut(s) 1600
BveI ACCTGC 1 cut(s) 923
Cac8I GCNNGC 3 cut(s) 113, 1546, 2101
Cfr10I RCCGGY 1 cut(s) 887
Cfr13I GGNCC 4 cut(s) 842, 843, 1293, 1464
CseI GACGC 1 cut(s) 1725
Csp6I GTAC 5 cut(s) 515, 699, 758, 1672, 2129
CviQI GTAC 5 cut(s) 515, 699, 758, 1672, 2129
DdeI CTNAG 7 cut(s) 69, 219, 946, 1800, 1881, 2148, 2241
DraI TTTAAA 2 cut(s) 655, 2119
DrdI GACNNNNNNGTC 1 cut(s) 941
DseDI GACNNNNNNGTC 1 cut(s) 941
EaeI YGGCCR 1 cut(s) 351
Eam1104I CTCTTC 4 cut(s) 1567, 1619, 1695, 2169
EarI CTCTTC 4 cut(s) 1567, 1619, 1695, 2169
Eco130I CCWWGG 3 cut(s) 1902, 1989, 2358
Eco24I GRGCYC 1 cut(s) 846
Eco32I GATATC 1 cut(s) 2026
Eco47I GGWCC 2 cut(s) 1293, 1464
Eco57I CTGAAG 3 cut(s) 44, 54, 2264
EcoO109I RGGNCCY 3 cut(s) 842, 1293, 1464
EcoRII CCWGG 4 cut(s) 348, 1896, 1983, 2041
EcoRV GATATC 1 cut(s) 2026
EcoT14I CCWWGG 3 cut(s) 1902, 1989, 2358
EcoT38I GRGCYC 1 cut(s) 846
ErhI CCWWGG 3 cut(s) 1902, 1989, 2358
FalI AAGNNNNNCTT 8 cut(s) 929, 961, 1563, 1595, 1625, 1657, 1689, 1721
FaqI GGGAC 1 cut(s) 1781
FbaI TGATCA 3 cut(s) 1597, 1918, 2005
Fnu4HI GCNGC 5 cut(s) 417, 536, 1140, 1311, 2076
FokI GGATG 6 cut(s) 410, 1011, 1106, 1552, 2198, 2341
FriOI GRGCYC 1 cut(s) 846
Fsp4HI GCNGC 5 cut(s) 417, 536, 1140, 1311, 2076
FspBI CTAG 4 cut(s) 807, 1014, 1041, 2343
GluI GCNGC 5 cut(s) 417, 536, 1140, 1311, 2076
GsaI CCCAGC 2 cut(s) 1225, 1396
GsuI CTGGAG 4 cut(s) 639, 1054, 1613, 2064
HaeIII GGCC 7 cut(s) 353, 844, 1254, 1425, 1901, 1988, 2114
HapII CCGG 2 cut(s) 888, 2183
HgaI GACGC 1 cut(s) 1725
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HindIII AAGCTT 1 cut(s) 2276
HinfI GANTC 5 cut(s) 259, 272, 965, 1067, 1655
HpaII CCGG 2 cut(s) 888, 2183
HphI GGTGA 6 cut(s) 216, 265, 482, 1600, 1919, 2006
Hpy166II GTNNAC 2 cut(s) 321, 1591
Hpy188I TCNGA 7 cut(s) 642, 768, 1132, 1246, 1417, 1570, 1686
Hpy8I GTNNAC 2 cut(s) 321, 1591
HpyCH4III ACNGT 4 cut(s) 286, 637, 666, 1595
HpyCH4IV ACGT 1 cut(s) 1670
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 578, 1114, 2264
HpyF3I CTNAG 7 cut(s) 69, 219, 946, 1800, 1881, 2148, 2241
HpySE526I ACGT 1 cut(s) 1670
Ksp22I TGATCA 3 cut(s) 1597, 1918, 2005
LguI GCTCTTC 3 cut(s) 1567, 1695, 2169
Lsp1109I GCAGC 5 cut(s) 428, 547, 1151, 1322, 2087
LweI GCATC 8 cut(s) 87, 900, 1084, 1235, 1406, 1728, 1867, 2319
MaeI CTAG 4 cut(s) 807, 1014, 1041, 2343
MaeII ACGT 1 cut(s) 1670
MaeIII GTNAC 4 cut(s) 222, 404, 470, 2373
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 5 cut(s) 550, 642, 803, 1059, 1681
MhlI GDGCHC 3 cut(s) 846, 1013, 1048
MlsI TGGCCA 1 cut(s) 353
MluNI TGGCCA 1 cut(s) 353
MlyI GAGTC 3 cut(s) 959, 1061, 1649
MnlI CCTC 7 cut(s) 241, 328, 470, 955, 1084, 1252, 1423
Mox20I TGGCCA 1 cut(s) 353
MroXI GAANNNNTTC 2 cut(s) 342, 1608
MscI TGGCCA 1 cut(s) 353
MslI CAYNNNNRTG 4 cut(s) 83, 168, 411, 1949
Msp20I TGGCCA 1 cut(s) 353
MspI CCGG 2 cut(s) 888, 2183
MspR9I CCNGG 4 cut(s) 350, 1898, 1985, 2043
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 360
MvaI CCWGG 4 cut(s) 350, 1898, 1985, 2043
MwoI GCNNNNNNNGC 4 cut(s) 117, 578, 1114, 2264
NcoI CCATGG 2 cut(s) 1902, 1989
NlaIV GGNNCC 1 cut(s) 844
NmuCI GTSAC 3 cut(s) 222, 404, 470
NspI RCATGY 5 cut(s) 319, 821, 1166, 1337, 1544
NspV TTCGAA 1 cut(s) 437
PciI ACATGT 4 cut(s) 315, 817, 1162, 1333
PciSI GCTCTTC 3 cut(s) 1567, 1695, 2169
PctI GAATGC 1 cut(s) 360
PdmI GAANNNNTTC 2 cut(s) 342, 1608
PfeI GAWTC 2 cut(s) 259, 272
PflMI CCANNNNNTGG 3 cut(s) 398, 1903, 1990
PfoI TCCNGGA 1 cut(s) 2041
PkrI GCNGC 5 cut(s) 418, 537, 1141, 1312, 2077
PleI GAGTC 3 cut(s) 959, 1061, 1649
PpsI GAGTC 3 cut(s) 959, 1061, 1649
PpuMI RGGWCCY 2 cut(s) 1293, 1464
PscI ACATGT 4 cut(s) 315, 817, 1162, 1333
Psp5II RGGWCCY 2 cut(s) 1293, 1464
Psp6I CCWGG 4 cut(s) 348, 1896, 1983, 2041
PspFI CCCAGC 2 cut(s) 1221, 1392
PspGI CCWGG 4 cut(s) 348, 1896, 1983, 2041
PspN4I GGNNCC 1 cut(s) 844
PspOMI GGGCCC 1 cut(s) 842
PspPI GGNCC 4 cut(s) 842, 843, 1293, 1464
PspPPI RGGWCCY 2 cut(s) 1293, 1464
PsrI GAACNNNNNNTAC 2 cut(s) 1738, 1770
PstI CTGCAG 2 cut(s) 906, 920
PsuI RGATCY 5 cut(s) 550, 642, 803, 1059, 1681
RsaI GTAC 5 cut(s) 516, 700, 759, 1673, 2130
RsaNI GTAC 5 cut(s) 515, 699, 758, 1672, 2129
RseI CAYNNNNRTG 4 cut(s) 83, 168, 411, 1949
SapI GCTCTTC 3 cut(s) 1567, 1695, 2169
SatI GCNGC 5 cut(s) 417, 536, 1140, 1311, 2076
Sau96I GGNCC 4 cut(s) 842, 843, 1293, 1464
ScaI AGTACT 1 cut(s) 2130
SchI GAGTC 3 cut(s) 959, 1061, 1649
ScrFI CCNGG 4 cut(s) 350, 1898, 1985, 2043
SduI GDGCHC 3 cut(s) 846, 1013, 1048
SfaNI GCATC 8 cut(s) 87, 900, 1084, 1235, 1406, 1728, 1867, 2319
SfcI CTRYAG 5 cut(s) 206, 327, 902, 916, 2322
SfuI TTCGAA 1 cut(s) 437
SinI GGWCC 2 cut(s) 1293, 1464
SmiMI CAYNNNNRTG 4 cut(s) 83, 168, 411, 1949
SmlI CTYRAG 2 cut(s) 784, 2314
SmoI CTYRAG 2 cut(s) 784, 2314
SpeI ACTAGT 1 cut(s) 1013
SsiI CCGC 1 cut(s) 40
SspMI CTAG 4 cut(s) 807, 1014, 1041, 2343
StyD4I CCNGG 4 cut(s) 348, 1896, 1983, 2041
StyI CCWWGG 3 cut(s) 1902, 1989, 2358
TaaI ACNGT 4 cut(s) 286, 637, 666, 1595
TaiI ACGT 1 cut(s) 1673
TaqI TCGA 7 cut(s) 81, 381, 437, 604, 933, 1553, 2028
TatI WGTACW 3 cut(s) 698, 757, 2128
TfiI GAWTC 2 cut(s) 259, 272
TscAI CASTG 1 cut(s) 1600
TseFI GTSAC 3 cut(s) 222, 404, 470
TseI GCWGC 5 cut(s) 416, 535, 1139, 1310, 2075
Tsp45I GTSAC 3 cut(s) 222, 404, 470
TspGWI ACGGA 2 cut(s) 489, 2241
TspRI CASTG 1 cut(s) 1600
Van91I CCANNNNNTGG 3 cut(s) 398, 1903, 1990
VpaK11BI GGWCC 2 cut(s) 1293, 1464
XapI RAATTY 7 cut(s) 293, 484, 673, 879, 1202, 1373, 1534
XceI RCATGY 5 cut(s) 319, 821, 1166, 1337, 1544
XmnI GAANNNNTTC 2 cut(s) 342, 1608
XspI CTAG 4 cut(s) 807, 1014, 1041, 2343
ZrmI AGTACT 1 cut(s) 2130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.