Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008728

Physical Location & Seq

Genomic Coordinates Forward (+)

28710389 .. 28712400

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG274900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGCCTATGATGATTGCTCAATTGAAAAGTATCTTCTACAGAGCCAATCTAAGTCACCAGCCTCGTTGCCGAAGGGTAGTGTGTGTTGTTTCGAATTTCAGCAGTTTCTTTCAAGGAAGTACAAAGAAAGGAAACGATATTGTTCAAAGCGTTAGACTAATGAAGGTTGATGGTTCTGTACTTTCTCTGAACATAAATCACAGCTCAAGACATCTTGCTGTGGGATCTAGTAAAGGACATGTTTCAGTTATTGATATAGAAGGGCCCACTCTATTATATAAAATCCACATTGCAAGTGAAATTTCTACCCGCATCATCTCTCTGCAGTTTGAAACCTGCAGTTTTCATGGTTTCGACAAGAATGTCTTAGCTGTTGCAACAGAGGACTCATCTGTTTTGGCTCTTGATAGTGATAATGGAAACACATTGAGCACTAGTCTGGTTCATCCCAAGAAACCCACTAGAGCACTTTTAATGCAGATCTTGGCAAAGGGAGTAGTGTTGAGGATGCCAAAAGACCTGTCTTTGCTACTGCTATGTTCCGAAAAAGCAGCATACATATATTCCTTCACACATGTCATGCAGGGAGTTAAGAAGGTAATATACAAGAAGAAATTTCAATCATCTTGTTGCTGGGCATCGACATTCTACACCTCTGATGTTGGCCTTATACTCGTTTTTACAACTGGAAAAATTGAGATAAGGTCCAACCATGACTTATCTTTGATAAAGGAGGCTTCAATAAGGGCCTTCACATATTCCACGTCAAAACTAAATTCACATGCTGGCAATTCGATATGCTCTTCATCCGAAGGAGAACTTGTTATGGTGAACAGTGATCAGGAAATCTTTCTCTTCTCTCTCATTTTCCAGAAGCAAAGCTTTAGGCTTTTAGACTCTTTCAACTTGACGTACCAGAAAGATCTGATGGTTTCACAAGAAGAGCTTACATCAGGACGCATCATTCAAAAGGAAAAGAAAAAGGGTATGTTTAGTTCTGTTCTTAAAGATATTGTGGGAAGTAAAGGGAAGAATGTCCCTGAGATGGAAAATGAAGATACTAAAGAAAGTATTGAAGAACTTTCAAAAATCTTTTCGACTGCTAATTTCCAATTTGATGCTGAGAACACAGACAACCAGGCCATGGGTGTAGATGATCAGTTAGATATAGGTATTGTAAACATAAAAGTTTTCTTGCAACCAGGCCATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

404

Amino Acids

44.9

Weight (kDa)

8.67

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35560 AT4G35560
fragaria_vesca	FvH4_1g10310
malus_domestica	MD15G1231200.v1.1
prunus_persica	Prupe.7G183000_v2.0.a1
pyrus_communis	pycom15g20610
rosa_chinensis	RchiOBHm_Chr2g0097151
rosa_laevigata	RLG00000016707
rosa_multiflora	Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144930
rosa_rugosa	Rorug02G0064700.1 Rorug02G0064800
rosa_samantha	Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900
rosa_wichuraiana	Rw2G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	1144, 1208
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	94, 300, 614, 775
AfaI	GTAC	3 cut(s)	121, 180, 914
AfiI	CCNNNNNNNGG	3 cut(s)	1045, 1144, 1208
AflIII	ACRYGT	2 cut(s)	238, 574
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	765
AjnI	CCWGG	2 cut(s)	1137, 1201
AluBI	AGCT	4 cut(s)	204, 371, 882, 946
AluI	AGCT	4 cut(s)	204, 371, 882, 946
Alw21I	GWGCWC	2 cut(s)	434, 469
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	5 cut(s)	263, 664, 747, 1140, 1204
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	4 cut(s)	94, 300, 614, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
Asp700I	GAANNNNTTC	1 cut(s)	849
AspS9I	GGNCC	4 cut(s)	263, 264, 705, 747
AsuHPI	GGTGA	2 cut(s)	47, 841
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	705
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	587, 619
Bbv12I	GWGCWC	2 cut(s)	434, 469
BbvI	GCAGC	1 cut(s)	563
BccI	CCATC	3 cut(s)	164, 922, 1039
BciT130I	CCWGG	2 cut(s)	1139, 1203
BclI	TGATCA	2 cut(s)	838, 1156
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	3 cut(s)	228, 435, 462
BfmI	CTRYAG	3 cut(s)	37, 323, 337
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	2 cut(s)	480, 922
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	2 cut(s)	1139, 1203
Bme18I	GGWCC	1 cut(s)	705
BmgBI	CACGTC	1 cut(s)	765
BmgT120I	GGNCC	4 cut(s)	263, 264, 705, 747
BmiI	GGNNCC	1 cut(s)	265
BmrFI	CCNGG	2 cut(s)	1139, 1203
BmsI	GCATC	5 cut(s)	321, 498, 647, 969, 1108
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	1143, 1207
BsaXI	ACNNNNNCTCC	2 cut(s)	807, 837
Bsc4I	CCNNNNNNNGG	3 cut(s)	1045, 1144, 1208
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	1139, 1203
BseDI	CCNNGG	2 cut(s)	1143, 1207
BseGI	GGATG	3 cut(s)	445, 513, 806
BseLI	CCNNNNNNNGG	3 cut(s)	1045, 1144, 1208
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	2 cut(s)	1032, 1113
BseNI	ACTGG	1 cut(s)	691
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	563
BseYI	CCCAGC	1 cut(s)	633
BshFI	GGCC	5 cut(s)	265, 666, 749, 1142, 1206
BsiHKAI	GWGCWC	2 cut(s)	434, 469
BslFI	GGGAC	1 cut(s)	1022
BslI	CCNNNNNNNGG	3 cut(s)	1045, 1144, 1208
BsmFI	GGGAC	1 cut(s)	1022
BsnI	GGCC	5 cut(s)	265, 666, 749, 1142, 1206
Bsp119I	TTCGAA	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	267, 434, 469
Bsp143I	GATC	5 cut(s)	224, 480, 838, 922, 1156
Bsp19I	CCATGG	2 cut(s)	1143, 1207
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	5 cut(s)	265, 666, 749, 1142, 1206
BspCNI	CTCAG	2 cut(s)	1033, 1114
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	2 cut(s)	327, 341
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	2 cut(s)	808, 936
BspT104I	TTCGAA	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	1143, 1207
BssMI	GATC	5 cut(s)	224, 480, 838, 922, 1156
BssT1I	CCWWGG	2 cut(s)	1143, 1207
Bst2UI	CCWGG	2 cut(s)	1139, 1203
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	3 cut(s)	808, 860, 936
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	787
BstDEI	CTNAG	4 cut(s)	50, 367, 1041, 1122
BstDSI	CCRYGG	2 cut(s)	1143, 1207
BstF5I	GGATG	3 cut(s)	445, 513, 806
BstKTI	GATC	5 cut(s)	227, 483, 841, 925, 1159
BstMBI	GATC	5 cut(s)	224, 480, 838, 922, 1156
BstNI	CCWGG	2 cut(s)	1139, 1203
BstNSI	RCATGY	3 cut(s)	242, 578, 785
BstSCI	CCNGG	2 cut(s)	1137, 1201
BstSFI	CTRYAG	3 cut(s)	37, 323, 337
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	563
BstX2I	RGATCY	3 cut(s)	224, 480, 922
BstYI	RGATCY	3 cut(s)	224, 480, 922
BsuRI	GGCC	5 cut(s)	265, 666, 749, 1142, 1206
BtgI	CCRYGG	2 cut(s)	1143, 1207
BtrI	CACGTC	1 cut(s)	765
BtsCI	GGATG	3 cut(s)	445, 513, 806
BtsIMutI	CAGTG	1 cut(s)	841
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	787
Cfr13I	GGNCC	4 cut(s)	263, 264, 705, 747
CseI	GACGC	1 cut(s)	966
Csp6I	GTAC	3 cut(s)	120, 179, 913
CviAII	CATG	8 cut(s)	239, 347, 575, 580, 713, 782, 1144, 1208
CviQI	GTAC	3 cut(s)	120, 179, 913
DdeI	CTNAG	4 cut(s)	50, 367, 1041, 1122
DpnI	GATC	5 cut(s)	226, 482, 840, 924, 1158
DpnII	GATC	5 cut(s)	224, 480, 838, 922, 1156
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	3 cut(s)	808, 860, 936
EarI	CTCTTC	3 cut(s)	808, 860, 936
Eco130I	CCWWGG	2 cut(s)	1143, 1207
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	705
EcoO109I	RGGNCCY	2 cut(s)	263, 747
EcoRII	CCWGG	2 cut(s)	1137, 1201
EcoT14I	CCWWGG	2 cut(s)	1143, 1207
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	1143, 1207
FaeI	CATG	8 cut(s)	242, 350, 578, 583, 716, 785, 1147, 1211
FalI	AAGNNNNNCTT	8 cut(s)	350, 382, 804, 836, 866, 898, 930, 962
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	8 cut(s)	238, 346, 574, 579, 712, 781, 1143, 1207
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	838, 1156
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	3 cut(s)	432, 520, 793
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	3 cut(s)	228, 435, 462
GluI	GCNGC	1 cut(s)	552
GsaI	CCCAGC	1 cut(s)	637
HaeIII	GGCC	5 cut(s)	265, 666, 749, 1142, 1206
HgaI	GACGC	1 cut(s)	966
Hin1II	CATG	8 cut(s)	242, 350, 578, 583, 716, 785, 1147, 1211
HindIII	AAGCTT	1 cut(s)	880
HinfI	GANTC	2 cut(s)	386, 896
HphI	GGTGA	2 cut(s)	47, 841
Hpy166II	GTNNAC	2 cut(s)	832, 1180
Hpy188I	TCNGA	5 cut(s)	189, 544, 658, 811, 927
Hpy188III	TCNNGA	5 cut(s)	207, 404, 842, 871, 954
Hpy8I	GTNNAC	2 cut(s)	832, 1180
HpyAV	CCTTC	7 cut(s)	66, 157, 254, 577, 589, 760, 806
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	2 cut(s)	764, 911
HpyCH4V	TGCA	7 cut(s)	293, 325, 339, 377, 478, 583, 1198
HpyF3I	CTNAG	4 cut(s)	50, 367, 1041, 1122
HpySE526I	ACGT	2 cut(s)	764, 911
Hsp92II	CATG	8 cut(s)	242, 350, 578, 583, 716, 785, 1147, 1211
Ksp22I	TGATCA	2 cut(s)	838, 1156
Kzo9I	GATC	5 cut(s)	224, 480, 838, 922, 1156
LguI	GCTCTTC	2 cut(s)	808, 936
Lsp1109I	GCAGC	1 cut(s)	563
LweI	GCATC	5 cut(s)	321, 498, 647, 969, 1108
MaeI	CTAG	3 cut(s)	228, 435, 462
MaeII	ACGT	2 cut(s)	764, 911
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	226, 482, 840, 924, 1158
MboI	GATC	5 cut(s)	224, 480, 838, 922, 1156
MboII	GAAGA	8 cut(s)	25, 622, 795, 847, 953, 1042, 1067, 1088
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	3 cut(s)	224, 480, 922
MhlI	GDGCHC	3 cut(s)	267, 434, 469
MluCI	AATT	9 cut(s)	20, 94, 300, 614, 693, 775, 790, 1105, 1112
MlyI	GAGTC	2 cut(s)	380, 890
MmeI	TCCRAC	1 cut(s)	732
MnlI	CCTC	5 cut(s)	72, 376, 498, 664, 727
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	3 cut(s)	473, 591, 1005
MspR9I	CCNGG	2 cut(s)	1139, 1203
MunI	CAATTG	1 cut(s)	20
MvaI	CCWGG	2 cut(s)	1139, 1203
NcoI	CCATGG	2 cut(s)	1143, 1207
NdeII	GATC	5 cut(s)	224, 480, 838, 922, 1156
NlaIII	CATG	8 cut(s)	242, 350, 578, 583, 716, 785, 1147, 1211
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	3 cut(s)	242, 578, 785
NspV	TTCGAA	1 cut(s)	92
PciI	ACATGT	2 cut(s)	238, 574
PciSI	GCTCTTC	2 cut(s)	808, 936
PdmI	GAANNNNTTC	1 cut(s)	849
PflMI	CCANNNNNTGG	2 cut(s)	1144, 1208
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	2 cut(s)	380, 890
PpsI	GAGTC	2 cut(s)	380, 890
PscI	ACATGT	2 cut(s)	238, 574
Psp6I	CCWGG	2 cut(s)	1137, 1201
PspFI	CCCAGC	1 cut(s)	633
PspGI	CCWGG	2 cut(s)	1137, 1201
PspN4I	GGNNCC	1 cut(s)	265
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 705, 747
PsrI	GAACNNNNNNTAC	2 cut(s)	979, 1011
PstI	CTGCAG	2 cut(s)	327, 341
PsuI	RGATCY	3 cut(s)	224, 480, 922
RsaI	GTAC	3 cut(s)	121, 180, 914
RsaNI	GTAC	3 cut(s)	120, 179, 913
SapI	GCTCTTC	2 cut(s)	808, 936
SaqAI	TTAA	3 cut(s)	473, 591, 1005
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	5 cut(s)	224, 480, 838, 922, 1156
Sau96I	GGNCC	4 cut(s)	263, 264, 705, 747
SchI	GAGTC	2 cut(s)	380, 890
ScrFI	CCNGG	2 cut(s)	1139, 1203
SduI	GDGCHC	3 cut(s)	267, 434, 469
SfaNI	GCATC	5 cut(s)	321, 498, 647, 969, 1108
SfcI	CTRYAG	3 cut(s)	37, 323, 337
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	705
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	9 cut(s)	20, 94, 300, 614, 693, 775, 790, 1105, 1112
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	3 cut(s)	228, 435, 462
StyD4I	CCNGG	2 cut(s)	1137, 1201
StyI	CCWWGG	2 cut(s)	1143, 1207
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	2 cut(s)	767, 914
TaqI	TCGA	5 cut(s)	92, 354, 641, 794, 1097
TasI	AATT	9 cut(s)	20, 94, 300, 614, 693, 775, 790, 1105, 1112
TatI	WGTACW	2 cut(s)	119, 178
Tru1I	TTAA	3 cut(s)	473, 591, 1005
Tru9I	TTAA	3 cut(s)	473, 591, 1005
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	5 cut(s)	176, 335, 434, 795, 1068
TspRI	CASTG	1 cut(s)	841
Van91I	CCANNNNNTGG	2 cut(s)	1144, 1208
VpaK11BI	GGWCC	1 cut(s)	705
XapI	RAATTY	4 cut(s)	94, 300, 614, 775
XceI	RCATGY	3 cut(s)	242, 578, 785
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	3 cut(s)	228, 435, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.