Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0008728

Physical Location & Seq

Genomic Coordinates Reverse (-)

34662278 .. 34664377

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG156700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCCTATGATGATTGCTCAATTGAAAAGTATCTTCTACAGAGCCAATCTAAGTCACCAGCCTCGTTGCCGAAGGGTAGTGTGTGGTGTTTCGAATTTCAGCAGTTTCTTTCAAGGAAGTACAAAGAAAGGAAACGATATTGTTCAAAGCGTTAGACTAATGAAGGTTGATGGTTCTGTACTTTCTCTGAACATAAATCACAGCTCAAGACATCTTGCTGTGGGATCTAGTAAAGGACATGTTTCAGTTATTGATATAGAAGGGCCCACTCTATTATATAAAATCCACATTGCAAGTGAAATTTCTACCCGCATCATCTCTCTGCAGTTTGAAACCTGCAGTTTTCATGGTTTCGACAAGAATGTCTTAGCTGTTGCAACAGAGGACTCATCTGTTTTGGCTCTTGATAGTGATAATGGAAACACATTGAGCACTAGTCTGGTTCATCCCAAGAAACCCACTAGAGCACTTTTAATGCAGATCTTGGACTCCAGCAAAGGGAGTAGTGTTGAGGATGCCATGCAAAAGCAGTCTTTGCTACTGCTATGTTCCGAAAAAGCAGCATACATATATTCCTTCACACATGTCATGCAGGGAGTTAAGAAGGTAATATACAAGAAGAAATTTCAATCATCTTGTTGCTGGGCATGGACATTCTACACCTCTGATGTTGGCCTTATACTCGTTTTTACAACTGGAAAAATTGAGATAAGGTCCAACCATGACTTATCTTTGATAAAGGAGACTTCAATAAGGGCCTTCACATATTCCACGTCAAAACTAAATTCACATGCTGGCAATTCGATATGCTCTTCATCCGAAGGAGAACTTGTTATGGTGAACAGTGATCAGGAAATCTTTCTCTTCTCTCTCATTTTCCAAAAGCAAAGCTTTAGGCTTTTACTCTTTCAACTTGACGTACCAGAAAGATCTGATGGTTTCACAAGAAGAGCTTACATCAGCACGCATCATTCAAAAGGAAAAGAAAAAGGTATTATGTACGGTAATGATGATCACATGATTTCATCTGTCTACGCAACCTATTTGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

350

Amino Acids

39.05

Weight (kDa)

9.12

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35560 AT4G35560
fragaria_vesca	FvH4_1g10310
malus_domestica	MD15G1231200.v1.1
prunus_persica	Prupe.7G183000_v2.0.a1
pyrus_communis	pycom15g20610
rosa_chinensis	RchiOBHm_Chr2g0097151
rosa_laevigata	RLG00000016707
rosa_multiflora	Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144930
rosa_rugosa	Rorug02G0064700.1 Rorug02G0064800
rosa_samantha	Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900
rosa_wichuraiana	Rw2G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	1032
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	4 cut(s)	94, 300, 623, 784
AfaI	GTAC	4 cut(s)	121, 180, 921, 1001
AfiI	CCNNNNNNNGG	1 cut(s)	498
AflIII	ACRYGT	2 cut(s)	238, 583
AgsI	TTSAA	8 cut(s)	25, 113, 146, 332, 629, 750, 911, 975
AhlI	ACTAGT	1 cut(s)	434
AjiI	CACGTC	1 cut(s)	774
AluBI	AGCT	4 cut(s)	204, 371, 891, 953
AluI	AGCT	4 cut(s)	204, 371, 891, 953
Alw21I	GWGCWC	2 cut(s)	434, 469
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	263, 673, 756
ApaI	GGGCCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	4 cut(s)	94, 300, 623, 784
Asp700I	GAANNNNTTC	1 cut(s)	858
AspS9I	GGNCC	4 cut(s)	263, 264, 714, 756
AsuHPI	GGTGA	2 cut(s)	47, 850
AsuII	TTCGAA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	714
BaeGI	GKGCMC	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	267
BarI	GAAGNNNNNNTAC	2 cut(s)	596, 628
Bbv12I	GWGCWC	2 cut(s)	434, 469
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	2 cut(s)	164, 929
BclI	TGATCA	2 cut(s)	847, 1012
BcoDI	GTCTC	1 cut(s)	737
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	3 cut(s)	228, 435, 462
BfmI	CTRYAG	3 cut(s)	37, 323, 337
BfuAI	ACCTGC	1 cut(s)	344
BglII	AGATCT	2 cut(s)	480, 929
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme18I	GGWCC	1 cut(s)	714
BmgBI	CACGTC	1 cut(s)	774
BmgT120I	GGNCC	4 cut(s)	263, 264, 714, 756
BmiI	GGNNCC	1 cut(s)	265
BmsI	GCATC	3 cut(s)	321, 505, 976
BpmI	CTGGAG	1 cut(s)	475
Bpu14I	TTCGAA	1 cut(s)	92
BpuEI	CTTGAG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	1 cut(s)	498
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	445, 520, 815
BseLI	CCNNNNNNNGG	1 cut(s)	498
BseMI	GCAATG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	700
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	572
BseYI	CCCAGC	1 cut(s)	642
BshFI	GGCC	3 cut(s)	265, 675, 758
BsiHKAI	GWGCWC	2 cut(s)	434, 469
BslI	CCNNNNNNNGG	1 cut(s)	498
BsmAI	GTCTC	1 cut(s)	737
BsnI	GGCC	3 cut(s)	265, 675, 758
Bsp119I	TTCGAA	1 cut(s)	92
Bsp120I	GGGCCC	1 cut(s)	263
Bsp1286I	GDGCHC	3 cut(s)	267, 434, 469
Bsp143I	GATC	5 cut(s)	224, 480, 847, 929, 1012
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	3 cut(s)	265, 675, 758
BspLI	GGNNCC	1 cut(s)	265
BspMAI	CTGCAG	2 cut(s)	327, 341
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	1 cut(s)	232
BspQI	GCTCTTC	2 cut(s)	817, 943
BspT104I	TTCGAA	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	700
BssMI	GATC	5 cut(s)	224, 480, 847, 929, 1012
Bst4CI	ACNGT	2 cut(s)	845, 1004
Bst6I	CTCTTC	3 cut(s)	817, 869, 943
BstAPI	GCANNNNNTGC	1 cut(s)	535
BstBI	TTCGAA	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	796, 965
BstDEI	CTNAG	2 cut(s)	50, 367
BstF5I	GGATG	3 cut(s)	445, 520, 815
BstKTI	GATC	5 cut(s)	227, 483, 850, 932, 1015
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	5 cut(s)	224, 480, 847, 929, 1012
BstMWI	GCNNNNNNNGC	1 cut(s)	535
BstNSI	RCATGY	3 cut(s)	242, 587, 794
BstSFI	CTRYAG	3 cut(s)	37, 323, 337
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	3 cut(s)	224, 480, 929
BstYI	RGATCY	3 cut(s)	224, 480, 929
BsuRI	GGCC	3 cut(s)	265, 675, 758
BtrI	CACGTC	1 cut(s)	774
BtsCI	GGATG	3 cut(s)	445, 520, 815
BtsIMutI	CAGTG	1 cut(s)	850
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	2 cut(s)	796, 965
Cfr13I	GGNCC	4 cut(s)	263, 264, 714, 756
Csp6I	GTAC	4 cut(s)	120, 179, 920, 1000
CviAII	CATG	9 cut(s)	239, 347, 520, 584, 589, 648, 722, 791, 1018
CviQI	GTAC	4 cut(s)	120, 179, 920, 1000
DdeI	CTNAG	2 cut(s)	50, 367
DpnI	GATC	5 cut(s)	226, 482, 849, 931, 1014
DpnII	GATC	5 cut(s)	224, 480, 847, 929, 1012
DrdI	GACNNNNNNGTC	1 cut(s)	362
DseDI	GACNNNNNNGTC	1 cut(s)	362
Eam1104I	CTCTTC	3 cut(s)	817, 869, 943
EarI	CTCTTC	3 cut(s)	817, 869, 943
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	714
EcoO109I	RGGNCCY	2 cut(s)	263, 756
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	9 cut(s)	242, 350, 523, 587, 592, 651, 725, 794, 1021
FalI	AAGNNNNNCTT	8 cut(s)	350, 382, 813, 845, 875, 907, 937, 969
FatI	CATG	9 cut(s)	238, 346, 519, 583, 588, 647, 721, 790, 1017
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	2 cut(s)	847, 1012
FblI	GTMKAC	1 cut(s)	1032
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	3 cut(s)	432, 527, 802
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	228, 435, 462
GluI	GCNGC	1 cut(s)	561
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	475
HaeIII	GGCC	3 cut(s)	265, 675, 758
Hin1II	CATG	9 cut(s)	242, 350, 523, 587, 592, 651, 725, 794, 1021
HindIII	AAGCTT	1 cut(s)	889
HinfI	GANTC	2 cut(s)	386, 488
HphI	GGTGA	2 cut(s)	47, 850
Hpy166II	GTNNAC	2 cut(s)	841, 1033
Hpy188I	TCNGA	5 cut(s)	189, 553, 667, 820, 934
Hpy188III	TCNNGA	3 cut(s)	207, 404, 851
Hpy8I	GTNNAC	2 cut(s)	841, 1033
HpyAV	CCTTC	7 cut(s)	66, 157, 254, 586, 598, 769, 815
HpyCH4III	ACNGT	2 cut(s)	845, 1004
HpyCH4IV	ACGT	2 cut(s)	773, 918
HpyCH4V	TGCA	7 cut(s)	293, 325, 339, 377, 478, 523, 592
HpyF10VI	GCNNNNNNNGC	1 cut(s)	535
HpyF3I	CTNAG	2 cut(s)	50, 367
HpySE526I	ACGT	2 cut(s)	773, 918
Hsp92II	CATG	9 cut(s)	242, 350, 523, 587, 592, 651, 725, 794, 1021
Ksp22I	TGATCA	2 cut(s)	847, 1012
Kzo9I	GATC	5 cut(s)	224, 480, 847, 929, 1012
LguI	GCTCTTC	2 cut(s)	817, 943
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	3 cut(s)	321, 505, 976
MaeI	CTAG	3 cut(s)	228, 435, 462
MaeII	ACGT	2 cut(s)	773, 918
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	5 cut(s)	226, 482, 849, 931, 1014
MboI	GATC	5 cut(s)	224, 480, 847, 929, 1012
MboII	GAAGA	5 cut(s)	25, 631, 804, 856, 960
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	3 cut(s)	224, 480, 929
MhlI	GDGCHC	3 cut(s)	267, 434, 469
MluCI	AATT	7 cut(s)	20, 94, 300, 623, 702, 784, 799
MlyI	GAGTC	2 cut(s)	380, 482
MmeI	TCCRAC	1 cut(s)	741
MnlI	CCTC	4 cut(s)	72, 376, 505, 673
MroXI	GAANNNNTTC	1 cut(s)	858
MseI	TTAA	2 cut(s)	473, 600
MunI	CAATTG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	535
NdeII	GATC	5 cut(s)	224, 480, 847, 929, 1012
NlaIII	CATG	9 cut(s)	242, 350, 523, 587, 592, 651, 725, 794, 1021
NlaIV	GGNNCC	1 cut(s)	265
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	3 cut(s)	242, 587, 794
NspV	TTCGAA	1 cut(s)	92
PciI	ACATGT	2 cut(s)	238, 583
PciSI	GCTCTTC	2 cut(s)	817, 943
PdmI	GAANNNNTTC	1 cut(s)	858
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	2 cut(s)	380, 482
PpsI	GAGTC	2 cut(s)	380, 482
PscI	ACATGT	2 cut(s)	238, 583
PspFI	CCCAGC	1 cut(s)	642
PspN4I	GGNNCC	1 cut(s)	265
PspOMI	GGGCCC	1 cut(s)	263
PspPI	GGNCC	4 cut(s)	263, 264, 714, 756
PstI	CTGCAG	2 cut(s)	327, 341
PsuI	RGATCY	3 cut(s)	224, 480, 929
RsaI	GTAC	4 cut(s)	121, 180, 921, 1001
RsaNI	GTAC	4 cut(s)	120, 179, 920, 1000
SapI	GCTCTTC	2 cut(s)	817, 943
SaqAI	TTAA	2 cut(s)	473, 600
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	5 cut(s)	224, 480, 847, 929, 1012
Sau96I	GGNCC	4 cut(s)	263, 264, 714, 756
SchI	GAGTC	2 cut(s)	380, 482
SduI	GDGCHC	3 cut(s)	267, 434, 469
SfaNI	GCATC	3 cut(s)	321, 505, 976
SfcI	CTRYAG	3 cut(s)	37, 323, 337
SfuI	TTCGAA	1 cut(s)	92
SinI	GGWCC	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	7 cut(s)	20, 94, 300, 623, 702, 784, 799
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	3 cut(s)	228, 435, 462
TaaI	ACNGT	2 cut(s)	845, 1004
TaiI	ACGT	2 cut(s)	776, 921
TaqI	TCGA	3 cut(s)	92, 354, 803
TasI	AATT	7 cut(s)	20, 94, 300, 623, 702, 784, 799
TatI	WGTACW	2 cut(s)	119, 178
Tru1I	TTAA	2 cut(s)	473, 600
Tru9I	TTAA	2 cut(s)	473, 600
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	5 cut(s)	176, 335, 434, 804, 1014
TspRI	CASTG	1 cut(s)	850
VpaK11BI	GGWCC	1 cut(s)	714
XapI	RAATTY	4 cut(s)	94, 300, 623, 784
XceI	RCATGY	3 cut(s)	242, 587, 794
XmiI	GTMKAC	1 cut(s)	1032
XmnI	GAANNNNTTC	1 cut(s)	858
XspI	CTAG	3 cut(s)	228, 435, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.