Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008728

Physical Location & Seq

Genomic Coordinates Forward (+)

5109872 .. 5110198

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCAGCGGGGGTTTACCAAGCTCGATCAGCTACTCCTCCACATCCACAGCAACCTGCCGATAATGGTGAACAAACAGCACAGCCGCAACAGCCGGATCCGAGCAGATACTTTGATATATCCAGTACCCAGATGGATGGTGAGTGCTGTATTTGCCTGGGGGAGTTTGAGGAAGGTCGTGAGCGCGCAGAGCTTCACGAGTGTAAGCATACTTATCACCGTCAATGCATTGATCTGTGGCTACCTAAACCATGTCCTCTTTGTCGTCGAGACCAATTACTATTAGAGATAAAGCAACACGTTTCGGAGTCAAACATTTATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0012505 GO:0016020 GO:0017016 GO:0017075 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0030141 GO:0030234 GO:0030695 GO:0031267 GO:0031410 GO:0031982 GO:0032879 GO:0032880 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045921 GO:0048518 GO:0048522 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051223 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0097708 GO:0098772 GO:0099503 GO:1903530 GO:1903532

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lgl_C

Protein Analysis

108

Amino Acids

12.37

Weight (kDa)

5.24

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	40 - 89	1.2e-06	RING-H2 zinc finger domain
zf-RING_2	PF13639	48 - 89	2e-09	Ring finger domain
zf-RING_11	PF17123	48 - 77	1.3e-08	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35560 AT4G35560
fragaria_vesca	FvH4_1g10310
malus_domestica	MD15G1231200.v1.1
prunus_persica	Prupe.7G183000_v2.0.a1
pyrus_communis	pycom15g20610
rosa_chinensis	RchiOBHm_Chr2g0097151
rosa_laevigata	RLG00000016707
rosa_multiflora	Rmu_sc0001182.1_g000007 Rmu_sc0013203.1_g000011
rosa_roxburghii	Rroxscaffold_2G00144930
rosa_rugosa	Rorug02G0064700.1 Rorug02G0064800
rosa_samantha	Rh1CG156700 Rh2AG111800 Rh2CG116100 Rh2DG115100 Rh4AG336200 Rh4DG120600 Rh4DG338700 Rh5DG319300 Rh7AG274900
rosa_wichuraiana	Rw2G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccII	CGCG	1 cut(s)	186
AciI	CCGC	2 cut(s)	8, 86
AclWI	GGATC	2 cut(s)	92, 105
AfaI	GTAC	1 cut(s)	127
AflIII	ACRYGT	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	3 cut(s)	23, 32, 193
AluI	AGCT	3 cut(s)	23, 32, 193
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	2 cut(s)	92, 105
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	186, 188
AsuHPI	GGTGA	3 cut(s)	80, 152, 209
BamHI	GGATCC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	2 cut(s)	127, 131
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	264
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	6, 86
BlsI	GCNGC	2 cut(s)	7, 87
Bme1390I	CCNGG	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	157
Bse1I	ACTGG	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	2 cut(s)	43, 142
BseNI	ACTGG	1 cut(s)	123
BsePI	GCGCGC	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	264
Bso31I	GGTCTC	1 cut(s)	264
Bsp143I	GATC	3 cut(s)	26, 97, 232
BspACI	CCGC	2 cut(s)	8, 86
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	92, 105
BspTNI	GGTCTC	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	157
BssHII	GCGCGC	1 cut(s)	184
BssMI	GATC	3 cut(s)	26, 97, 232
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	2 cut(s)	43, 142
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	186, 188
BstKTI	GATC	3 cut(s)	29, 100, 235
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	26, 97, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 91, 153, 190
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	97
BstXI	CCANNNNNNTGG	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	97
BtsCI	GGATG	2 cut(s)	43, 142
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	186, 188
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	252
CviJI	RGCY	6 cut(s)	23, 32, 85, 94, 193, 241
CviKI_1	RGCY	6 cut(s)	23, 32, 85, 94, 193, 241
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	3 cut(s)	28, 99, 234
DpnII	GATC	3 cut(s)	26, 97, 232
Eco31I	GGTCTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	230
FaeI	CATG	1 cut(s)	255
FaiI	YATR	5 cut(s)	119, 210, 253, 321, 325
FatI	CATG	1 cut(s)	251
Fnu4HI	GCNGC	2 cut(s)	6, 86
FokI	GGATG	2 cut(s)	30, 149
Fsp4HI	GCNGC	2 cut(s)	6, 86
GlaI	GCGC	2 cut(s)	185, 187
GluI	GCNGC	2 cut(s)	6, 86
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	2 cut(s)	186, 188
Hin1II	CATG	1 cut(s)	255
Hin6I	GCGC	2 cut(s)	184, 186
HinP1I	GCGC	2 cut(s)	184, 186
HinfI	GANTC	1 cut(s)	308
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	80, 152, 209
Hpy166II	GTNNAC	2 cut(s)	16, 71
Hpy188I	TCNGA	2 cut(s)	102, 307
Hpy188III	TCNNGA	3 cut(s)	179, 197, 269
Hpy8I	GTNNAC	2 cut(s)	16, 71
Hpy99I	CGWCG	1 cut(s)	270
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 91, 153, 190
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	255
HspAI	GCGC	2 cut(s)	184, 186
Kzo9I	GATC	3 cut(s)	26, 97, 232
LpnPI	CCDG	6 cut(s)	69, 108, 136, 143, 143, 170
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	1 cut(s)	300
MalI	GATC	3 cut(s)	28, 99, 234
MboI	GATC	3 cut(s)	26, 97, 232
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	1 cut(s)	275
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	48, 163, 267
Mph1103I	ATGCAT	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	4 cut(s)	29, 91, 153, 190
NdeII	GATC	3 cut(s)	26, 97, 232
NlaIII	CATG	1 cut(s)	255
NlaIV	GGNNCC	1 cut(s)	99
NsiI	ATGCAT	1 cut(s)	230
PauI	GCGCGC	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	7, 87
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	97
PteI	GCGCGC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	2 cut(s)	6, 86
Sau3AI	GATC	3 cut(s)	26, 97, 232
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	158
SetI	ASST	7 cut(s)	25, 34, 58, 178, 195, 247, 303
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	8, 86
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	2 cut(s)	25, 268
TasI	AATT	1 cut(s)	275
TauI	GCSGC	1 cut(s)	88
TseI	GCWGC	1 cut(s)	5
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.