Prupe.7G242300_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0014629
Physical Location & Seq
Reverse (-)
20786832 .. 20788723
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G242300.1

Sequence Viewer

Length: 1587 bp
ATGATTCAGAAAACCGTTAAAAGCAACGACCTTGTTTCCCTCTCACAAAAATGCAAAACCCTAAACCAACTCAAGCAAATCTACGCCCACCTCCTCACATGTCGTCTACCAGAAAACCCCTACTCAATTGCACCGCTCCTCTCGGCCTCCGCAACTTCGAAAGATGCTTCCTTGTTTTGCTACGCTTGCTCAATCTTCAAGCATCATCATCACCGCAACACCTTCATGTACAACACCATGATCAGAGGATATGTTCTTCAATCGCATACGCCAATTCCCGCCATTTTGTGTTATTTAGACATGCTGAATTATGGGTTTGTTCCTAATAACTATACTTTTCCGCCATTGATCAAAGCGTGTACAGTTCTCATCCCGAATTCTAAGCTAAGTGGTCGCTTAGTTCATGGCCATGTTGTTAAATTCGGGTACCGGGACGACCCTTTTGTTCTTAGCTCGCTGATCGAGTTTTACTCTGTTATCCACGACATGGAAACTGCAAAGTTGGTGTTCGATAAAAGTCCGAAGAGGGATGTGGTGGTGTGGACGGCAATGATTGACGGGTATGGAAAGGCGGGGGACGTTGAAAATGCGAGAGCTTTGTTTGATGAAATGCCTGAGAGGAATGCTATATCGTGGAGTGCAATGATGGCTGCGTATTCTCGGGTGAGCCATTTCAGGGAGGTGCTTTCTTTATTTAGGCAAATGCAAGAAGTAGGCACAAAGCCTAATGAGTCAGTTCTTGTTAGTGTTCTCACTGCCTCTGCTCATCTTGGTGCGGTCACGCAAGGCTTGTGGGTCCACTCATTTGCCAAAAGGTACAATCTTGAATCAAATACGATATTGGCCACTGCACTGGTTGATATGTACTCAAAATGCGGATATGTGGAAGCAGCTTTGTGGGTTTTTGAGGGCATTTCTAATAAGGATGCTAGAGCGTGGAATGCTATGATTGCTGGGGTTGCAATGAATGGTGATGCAAGGAAATCACTTGAACTCTTTAATAAAATGGTTGAATATGGTGGCGTTCAACCCACAGAGACCACATTTGTTGCTGTTCTCACGGCTTGTACGCATGCAAAAATGGTTGACAAGGGCCTTGAGTTGTTTGATCAAATGGGTAACCTTTACGGGGTTAAACCTGGGCTTGAGCACTACGGATGTGTTGTTGACCTTTTGGCAAGAGCAGGCTTGGTGGAGGAAGCTGAGAAGTTTACAGAGGTCAAGATGGGAGGACTACGAAGAGGGGATGTCAATGTGTGGGGAGCATTACTGGCTGCATGCAGAGTTCATGGGAATGTTGAAGTTGGGGACAGAATTTGGAAAAAGCTCGCTGAGATGGGAGTAGCTGACTGTGGCATTCATGTTCTTTCATATAATATGTACAAGGCTGCTGGCATGGAATTGGAGGCAAACAGAGTCAGAAATATGATCTCGGAAGCGGGAATGAAGAAGAAACCTGGTTCCAGTGTGATAGAGTTAAATGGAGTGGCTGAAGAATTCCTTATTGGTGATGTTTGTCATCCACAAGCAGAAGAAATAGTTAATATGCTCGACTCTCTTTGTAAAATGGTGAATTTGGAGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

529

Amino Acids

58.54

Weight (kDa)

6.98

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03350
malus_domestica MD02G1033000.v1.1
prunus_persica Prupe.7G242300_v2.0.a1
pyrus_communis pycom02g01480 pycom02g02710 pycom04g20500
rosa_chinensis RchiOBHm_Chr2g0088571
rosa_laevigata RLG00000015966
rosa_multiflora Rmu_co8371145.1_g000001 Rmu_sc0004733.1_g000003
rosa_roxburghii Rroxscaffold_2G00152540
rosa_rugosa Rorug01G0485200
rosa_samantha Rh2AG040500 Rh2BG039200 Rh2CG040100 Rh2DG039500
rosa_wichuraiana Rw2G003140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 426
AccB7I CCANNNNNTGG 1 cut(s) 487
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 106
AciI CCGC 9 cut(s) 134, 150, 214, 279, 341, 572, 776, 876, 1439
AcoI YGGCCR 2 cut(s) 406, 843
AcsI RAATTY 5 cut(s) 376, 419, 1314, 1496, 1573
AcuI CTGAAG 1 cut(s) 1512
AfaI GTAC 7 cut(s) 230, 361, 428, 818, 866, 1069, 1382
AfiI CCNNNNNNNGG 3 cut(s) 487, 676, 1129
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 8 cut(s) 199, 260, 584, 827, 992, 1013, 1028, 1301
AjnI CCWGG 2 cut(s) 1138, 1456
AjuI GAANNNNNNNTTGG 2 cut(s) 1488, 1520
AluBI AGCT 7 cut(s) 385, 453, 596, 893, 1202, 1327, 1346
AluI AGCT 7 cut(s) 385, 453, 596, 893, 1202, 1327, 1346
Alw21I GWGCWC 1 cut(s) 1152
Alw26I GTCTC 1 cut(s) 1031
Ama87I CYCGRG 1 cut(s) 660
AoxI GGCC 4 cut(s) 144, 406, 843, 1093
ApeKI GCWGC 4 cut(s) 650, 890, 1274, 1388
ApoI RAATTY 5 cut(s) 376, 419, 1314, 1496, 1573
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
Asp718I GGTACC 1 cut(s) 426
AspS9I GGNCC 2 cut(s) 796, 1093
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 5 cut(s) 203, 676, 983, 1520, 1582
AsuII TTCGAA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 660
AvaII GGWCC 1 cut(s) 796
BalI TGGCCA 2 cut(s) 408, 845
BanI GGYRCC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 4 cut(s) 637, 902, 1261, 1375
BccI CCATC 3 cut(s) 640, 1219, 1330
BceAI ACGGC 2 cut(s) 561, 1077
BciT130I CCWGG 2 cut(s) 1140, 1458
BclI TGATCA 3 cut(s) 240, 348, 1108
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 1031
BfaI CTAG 1 cut(s) 930
BisI GCNGC 4 cut(s) 651, 891, 1275, 1389
BlsI GCNGC 4 cut(s) 652, 892, 1276, 1390
Bme1390I CCNGG 3 cut(s) 431, 1140, 1458
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 660
BmgT120I GGNCC 2 cut(s) 796, 1093
BmiI GGNNCC 3 cut(s) 428, 797, 1462
BmrFI CCNGG 3 cut(s) 431, 1140, 1458
BmsI GCATC 4 cut(s) 154, 211, 916, 964
BplI GAGNNNNNCTC 2 cut(s) 455, 487
Bpu14I TTCGAA 1 cut(s) 158
BpuEI CTTGAG 3 cut(s) 56, 1118, 1166
BpuMI CCSGG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 1031
BsaJI CCNNGG 1 cut(s) 1139
Bsc4I CCNNNNNNNGG 3 cut(s) 487, 676, 1129
Bse1I ACTGG 3 cut(s) 858, 1275, 1464
Bse3DI GCAATG 3 cut(s) 555, 648, 969
BseBI CCWGG 2 cut(s) 1140, 1458
BseDI CCNNGG 1 cut(s) 1139
BseGI GGATG 6 cut(s) 369, 535, 931, 1163, 1252, 1519
BseLI CCNNNNNNNGG 3 cut(s) 487, 676, 1129
BseMI GCAATG 3 cut(s) 555, 648, 969
BseMII CTCAG 3 cut(s) 606, 1194, 1323
BseNI ACTGG 3 cut(s) 858, 1275, 1464
BseRI GAGGAG 2 cut(s) 83, 128
BseXI GCAGC 4 cut(s) 637, 902, 1261, 1375
BseYI CCCAGC 1 cut(s) 953
BsgI GTGCAG 1 cut(s) 834
BshFI GGCC 4 cut(s) 146, 408, 845, 1095
BshNI GGYRCC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 1152
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 1 cut(s) 430
BslFI GGGAC 3 cut(s) 446, 590, 1322
BslI CCNNNNNNNGG 3 cut(s) 487, 676, 1129
BsmAI GTCTC 1 cut(s) 1031
BsmFI GGGAC 3 cut(s) 446, 590, 1322
BsmI GAATGC 3 cut(s) 628, 946, 1356
BsnI GGCC 4 cut(s) 146, 408, 845, 1095
Bso31I GGTCTC 1 cut(s) 1031
BsoBI CYCGRG 1 cut(s) 660
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 1152
Bsp1407I TGTACA 3 cut(s) 228, 359, 1380
Bsp143I GATC 5 cut(s) 240, 348, 459, 1108, 1428
BspACI CCGC 9 cut(s) 134, 150, 214, 279, 341, 572, 776, 876, 1439
BspANI GGCC 4 cut(s) 146, 408, 845, 1095
BspCNI CTCAG 3 cut(s) 607, 1195, 1324
BspLI GGNNCC 3 cut(s) 428, 797, 1462
BspT104I TTCGAA 1 cut(s) 158
BspT107I GGYRCC 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 1031
BsrBI CCGCTC 1 cut(s) 136
BsrDI GCAATG 3 cut(s) 555, 648, 969
BsrGI TGTACA 3 cut(s) 228, 359, 1380
BsrI ACTGG 3 cut(s) 858, 1275, 1464
BssECI CCNNGG 1 cut(s) 1139
BssMI GATC 5 cut(s) 240, 348, 459, 1108, 1428
Bst2UI CCWGG 2 cut(s) 1140, 1458
Bst4CI ACNGT 3 cut(s) 16, 364, 1352
Bst6I CTCTTC 2 cut(s) 518, 1234
BstAUI TGTACA 3 cut(s) 228, 359, 1380
BstBI TTCGAA 1 cut(s) 158
BstC8I GCNNGC 7 cut(s) 187, 455, 1074, 1186, 1279, 1329, 1393
BstDEI CTNAG 7 cut(s) 381, 386, 397, 449, 615, 1203, 1332
BstEII GGTNACC 1 cut(s) 1118
BstF5I GGATG 6 cut(s) 369, 535, 931, 1163, 1252, 1519
BstKTI GATC 5 cut(s) 243, 351, 462, 1111, 1431
BstMAI GTCTC 1 cut(s) 1031
BstMBI GATC 5 cut(s) 240, 348, 459, 1108, 1428
BstMWI GCNNNNNNNGC 6 cut(s) 186, 647, 941, 950, 959, 1271
BstNI CCWGG 2 cut(s) 1140, 1458
BstNSI RCATGY 4 cut(s) 102, 304, 1076, 1281
BstPI GGTNACC 1 cut(s) 1118
BstSCI CCNGG 3 cut(s) 429, 1138, 1456
BstV1I GCAGC 4 cut(s) 637, 902, 1261, 1375
BstXI CCANNNNNNTGG 1 cut(s) 853
BsuRI GGCC 4 cut(s) 146, 408, 845, 1095
BtsCI GGATG 6 cut(s) 369, 535, 931, 1163, 1252, 1519
BtsI GCAGTG 2 cut(s) 753, 846
BtsIMutI CAGTG 4 cut(s) 753, 846, 851, 1471
Cac8I GCNNGC 7 cut(s) 187, 455, 1074, 1186, 1279, 1329, 1393
Cfr13I GGNCC 2 cut(s) 796, 1093
CsiI ACCWGGT 1 cut(s) 1456
Csp6I GTAC 7 cut(s) 229, 360, 427, 817, 865, 1068, 1381
CspCI CAANNNNNGTGG 4 cut(s) 773, 808, 1030, 1065
CviQI GTAC 7 cut(s) 229, 360, 427, 817, 865, 1068, 1381
DdeI CTNAG 7 cut(s) 381, 386, 397, 449, 615, 1203, 1332
DpnI GATC 5 cut(s) 242, 350, 461, 1110, 1430
DpnII GATC 5 cut(s) 240, 348, 459, 1108, 1428
EaeI YGGCCR 2 cut(s) 406, 843
Eam1104I CTCTTC 2 cut(s) 518, 1234
EarI CTCTTC 2 cut(s) 518, 1234
EciI GGCGGA 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 1031
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 1 cut(s) 1512
Eco88I CYCGRG 1 cut(s) 660
Eco91I GGTNACC 1 cut(s) 1118
EcoO109I RGGNCCY 1 cut(s) 1093
EcoO65I GGTNACC 1 cut(s) 1118
EcoRI GAATTC 2 cut(s) 376, 1496
EcoRII CCWGG 2 cut(s) 1138, 1456
FalI AAGNNNNNCTT 2 cut(s) 1485, 1517
FaqI GGGAC 3 cut(s) 446, 590, 1322
FauI CCCGC 3 cut(s) 286, 565, 1432
FbaI TGATCA 3 cut(s) 240, 348, 1108
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 4 cut(s) 651, 891, 1275, 1389
FokI GGATG 6 cut(s) 356, 542, 938, 1170, 1259, 1506
Fsp4HI GCNGC 4 cut(s) 651, 891, 1275, 1389
FspBI CTAG 1 cut(s) 930
GluI GCNGC 4 cut(s) 651, 891, 1275, 1389
GsaI CCCAGC 1 cut(s) 957
HaeIII GGCC 4 cut(s) 146, 408, 845, 1095
HapII CCGG 1 cut(s) 430
HincII GTYRAC 2 cut(s) 1087, 1168
HindII GTYRAC 2 cut(s) 1087, 1168
HinfI GANTC 5 cut(s) 4, 731, 827, 1416, 1553
HpaII CCGG 1 cut(s) 430
HphI GGTGA 5 cut(s) 203, 676, 983, 1520, 1582
Hpy166II GTNNAC 7 cut(s) 107, 360, 543, 799, 1087, 1168, 1212
Hpy188I TCNGA 5 cut(s) 9, 245, 522, 1421, 1435
Hpy188III TCNNGA 3 cut(s) 373, 824, 1222
Hpy8I GTNNAC 7 cut(s) 107, 360, 543, 799, 1087, 1168, 1212
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 16, 364, 1352
HpyCH4IV ACGT 1 cut(s) 579
HpyF10VI GCNNNNNNNGC 6 cut(s) 186, 647, 941, 950, 959, 1271
HpyF3I CTNAG 7 cut(s) 381, 386, 397, 449, 615, 1203, 1332
HpySE526I ACGT 1 cut(s) 579
KpnI GGTACC 1 cut(s) 430
Ksp22I TGATCA 3 cut(s) 240, 348, 1108
Kzo9I GATC 5 cut(s) 240, 348, 459, 1108, 1428
LmnI GCTCC 2 cut(s) 141, 1262
Lsp1109I GCAGC 4 cut(s) 637, 902, 1261, 1375
LweI GCATC 4 cut(s) 154, 211, 916, 964
MabI ACCWGGT 1 cut(s) 1456
MaeI CTAG 1 cut(s) 930
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 778, 1118
MalI GATC 5 cut(s) 242, 350, 461, 1110, 1430
MbiI CCGCTC 1 cut(s) 136
MboI GATC 5 cut(s) 240, 348, 459, 1108, 1428
MboII GAAGA 8 cut(s) 187, 248, 535, 1251, 1459, 1462, 1505, 1544
MfeI CAATTG 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 1152
MlsI TGGCCA 2 cut(s) 408, 845
MluCI AATT 9 cut(s) 126, 273, 307, 376, 419, 1314, 1400, 1496, 1573
MluNI TGGCCA 2 cut(s) 408, 845
MlyI GAGTC 3 cut(s) 740, 1425, 1547
Mox20I TGGCCA 2 cut(s) 408, 845
MscI TGGCCA 2 cut(s) 408, 845
MseI TTAA 6 cut(s) 18, 417, 999, 1134, 1478, 1542
MslI CAYNNNNRTG 5 cut(s) 49, 224, 408, 771, 1293
Msp20I TGGCCA 2 cut(s) 408, 845
MspI CCGG 1 cut(s) 430
MspR9I CCNGG 3 cut(s) 431, 1140, 1458
MunI CAATTG 1 cut(s) 126
Mva1269I GAATGC 3 cut(s) 628, 946, 1356
MvaI CCWGG 2 cut(s) 1140, 1458
MwoI GCNNNNNNNGC 6 cut(s) 186, 647, 941, 950, 959, 1271
NciI CCSGG 1 cut(s) 431
NdeII GATC 5 cut(s) 240, 348, 459, 1108, 1428
NlaIV GGNNCC 3 cut(s) 428, 797, 1462
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 778
NspI RCATGY 4 cut(s) 102, 304, 1076, 1281
NspV TTCGAA 1 cut(s) 158
PaeI GCATGC 2 cut(s) 1076, 1281
PciI ACATGT 1 cut(s) 98
PctI GAATGC 3 cut(s) 628, 946, 1356
PfeI GAWTC 2 cut(s) 4, 827
PflMI CCANNNNNTGG 1 cut(s) 487
PkrI GCNGC 4 cut(s) 652, 892, 1276, 1390
PleI GAGTC 3 cut(s) 739, 1424, 1547
PpsI GAGTC 3 cut(s) 739, 1424, 1547
PscI ACATGT 1 cut(s) 98
Psp6I CCWGG 2 cut(s) 1138, 1456
PspEI GGTNACC 1 cut(s) 1118
PspFI CCCAGC 1 cut(s) 953
PspGI CCWGG 2 cut(s) 1138, 1456
PspN4I GGNNCC 3 cut(s) 428, 797, 1462
PspPI GGNCC 2 cut(s) 796, 1093
RsaI GTAC 7 cut(s) 230, 361, 428, 818, 866, 1069, 1382
RsaNI GTAC 7 cut(s) 229, 360, 427, 817, 865, 1068, 1381
RseI CAYNNNNRTG 5 cut(s) 49, 224, 408, 771, 1293
SaqAI TTAA 6 cut(s) 18, 417, 999, 1134, 1478, 1542
SatI GCNGC 4 cut(s) 651, 891, 1275, 1389
Sau3AI GATC 5 cut(s) 240, 348, 459, 1108, 1428
Sau96I GGNCC 2 cut(s) 796, 1093
SchI GAGTC 3 cut(s) 740, 1425, 1547
ScrFI CCNGG 3 cut(s) 431, 1140, 1458
SduI GDGCHC 1 cut(s) 1152
SexAI ACCWGGT 1 cut(s) 1456
SfaNI GCATC 4 cut(s) 154, 211, 916, 964
SfuI TTCGAA 1 cut(s) 158
SinI GGWCC 1 cut(s) 796
SmiMI CAYNNNNRTG 5 cut(s) 49, 224, 408, 771, 1293
SmlI CTYRAG 3 cut(s) 71, 1097, 1145
SmoI CTYRAG 3 cut(s) 71, 1097, 1145
SphI GCATGC 2 cut(s) 1076, 1281
Sse9I AATT 9 cut(s) 126, 273, 307, 376, 419, 1314, 1400, 1496, 1573
SsiI CCGC 9 cut(s) 134, 150, 214, 279, 341, 572, 776, 876, 1439
SspMI CTAG 1 cut(s) 930
StyD4I CCNGG 3 cut(s) 429, 1138, 1456
TaaI ACNGT 3 cut(s) 16, 364, 1352
TaiI ACGT 1 cut(s) 582
TaqI TCGA 4 cut(s) 158, 462, 510, 1551
TasI AATT 9 cut(s) 126, 273, 307, 376, 419, 1314, 1400, 1496, 1573
TatI WGTACW 4 cut(s) 228, 359, 864, 1380
TfiI GAWTC 2 cut(s) 4, 827
Tru1I TTAA 6 cut(s) 18, 417, 999, 1134, 1478, 1542
Tru9I TTAA 6 cut(s) 18, 417, 999, 1134, 1478, 1542
TscAI CASTG 4 cut(s) 760, 853, 858, 1471
TseFI GTSAC 1 cut(s) 778
TseI GCWGC 4 cut(s) 650, 890, 1274, 1388
Tsp45I GTSAC 1 cut(s) 778
TspDTI ATGAA 8 cut(s) 214, 392, 621, 980, 1277, 1349, 1359, 1460
TspGWI ACGGA 1 cut(s) 1170
TspRI CASTG 4 cut(s) 760, 853, 858, 1471
Van91I CCANNNNNTGG 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 5 cut(s) 376, 419, 1314, 1496, 1573
XceI RCATGY 4 cut(s) 102, 304, 1076, 1281
XmiI GTMKAC 1 cut(s) 106
XspI CTAG 1 cut(s) 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.