Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g03350 |
| malus_domestica | MD02G1033000.v1.1 |
| prunus_persica | Prupe.7G242300_v2.0.a1 |
| pyrus_communis | pycom02g01480 pycom02g02710 pycom04g20500 |
| rosa_chinensis | RchiOBHm_Chr2g0088571 |
| rosa_laevigata | RLG00000015966 |
| rosa_multiflora | Rmu_co8371145.1_g000001 Rmu_sc0004733.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00152540 |
| rosa_rugosa | Rorug01G0485200 |
| rosa_samantha | Rh2AG040500 Rh2BG039200 Rh2CG040100 Rh2DG039500 |
| rosa_wichuraiana | Rw2G003140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1755, 2829, 3147 |
| AccBSI | CCGCTC | 2 cut(s) | 961, 2035 |
| AccI | GTMKAC | 2 cut(s) | 42, 2976 |
| AccII | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| AclWI | GGATC | 4 cut(s) | 368, 511, 1834, 2908 |
| AcoI | YGGCCR | 5 cut(s) | 1467, 1662, 2541, 2736, 3066 |
| AcsI | RAATTY | 7 cut(s) | 368, 408, 514, 1238, 2312, 3204, 3463 |
| AcuI | CTGAAG | 3 cut(s) | 66, 3020, 3402 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 470, 1755, 2829, 3018, 3019, 3147 |
| AflII | CTTAAG | 2 cut(s) | 593, 3431 |
| AflIII | ACRYGT | 3 cut(s) | 357, 3144, 3267 |
| AgeI | ACCGGT | 2 cut(s) | 1208, 2282 |
| AjnI | CCWGG | 1 cut(s) | 3346 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 284, 316, 393, 425, 1643, 1675 |
| Alw21I | GWGCWC | 3 cut(s) | 75, 188, 1620 |
| Alw26I | GTCTC | 1 cut(s) | 493 |
| Alw44I | GTGCAC | 1 cut(s) | 1616 |
| AlwI | GGATC | 4 cut(s) | 368, 511, 1834, 2908 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 500 |
| Ama87I | CYCGRG | 2 cut(s) | 1479, 2553 |
| AoxI | GGCC | 7 cut(s) | 1467, 1541, 1662, 2541, 2615, 2736, 3066 |
| ApaLI | GTGCAC | 1 cut(s) | 1616 |
| ApoI | RAATTY | 7 cut(s) | 368, 408, 514, 1238, 2312, 3204, 3463 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 677, 709 |
| AsiGI | ACCGGT | 2 cut(s) | 1208, 2282 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 482, 746, 1418, 2492 |
| AspLEI | GCGC | 8 cut(s) | 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677 |
| AspS9I | GGNCC | 2 cut(s) | 1189, 2263 |
| AsuC2I | CCSGG | 1 cut(s) | 228 |
| AsuHPI | GGTGA | 7 cut(s) | 16, 1022, 1306, 2096, 2380, 3410, 3472 |
| AvaI | CYCGRG | 2 cut(s) | 1479, 2553 |
| AvaII | GGWCC | 2 cut(s) | 1189, 2263 |
| BaeGI | GKGCMC | 1 cut(s) | 1620 |
| BalI | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| BanII | GRGCYC | 4 cut(s) | 54, 75, 188, 315 |
| Bbv12I | GWGCWC | 3 cut(s) | 75, 188, 1620 |
| BceAI | ACGGC | 2 cut(s) | 1380, 2454 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1785, 1819, 2859, 2893 |
| BciT130I | CCWGG | 1 cut(s) | 3348 |
| BclI | TGATCA | 5 cut(s) | 1062, 1167, 2136, 2241, 2998 |
| BcnI | CCSGG | 1 cut(s) | 228 |
| BcoDI | GTCTC | 1 cut(s) | 493 |
| BfaI | CTAG | 9 cut(s) | 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354 |
| BfmI | CTRYAG | 5 cut(s) | 201, 492, 726, 1848, 2922 |
| BfrI | CTTAAG | 2 cut(s) | 593, 3431 |
| BlpI | GCTNAGC | 1 cut(s) | 2274 |
| Bme1390I | CCNGG | 2 cut(s) | 228, 3348 |
| Bme18I | GGWCC | 2 cut(s) | 1189, 2263 |
| BmeT110I | CYCGRG | 2 cut(s) | 1479, 2553 |
| BmgT120I | GGNCC | 2 cut(s) | 1189, 2263 |
| BmiI | GGNNCC | 1 cut(s) | 278 |
| BmrFI | CCNGG | 2 cut(s) | 228, 3348 |
| BmrI | ACTGGG | 4 cut(s) | 102, 1782, 2856, 3170 |
| BmsI | GCATC | 8 cut(s) | 232, 607, 781, 1735, 1783, 2809, 2857, 3127 |
| BmuI | ACTGGG | 4 cut(s) | 102, 1782, 2856, 3170 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2274 |
| BpuEI | CTTGAG | 6 cut(s) | 881, 1322, 1664, 1955, 2396, 2738 |
| BpuMI | CCSGG | 1 cut(s) | 228 |
| Bsa29I | ATCGAT | 2 cut(s) | 1805, 2879 |
| BsaBI | GATNNNNATC | 1 cut(s) | 686 |
| BsaWI | WCCGGW | 2 cut(s) | 1208, 2282 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1144, 1174, 2218, 2248 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 470, 1755, 2829, 3018, 3019, 3147 |
| Bse118I | RCCGGY | 4 cut(s) | 1090, 1208, 2164, 2282 |
| Bse1I | ACTGG | 4 cut(s) | 108, 1777, 2851, 3165 |
| Bse3DI | GCAATG | 1 cut(s) | 587 |
| Bse8I | GATNNNNATC | 1 cut(s) | 686 |
| BseBI | CCWGG | 1 cut(s) | 3348 |
| BseCI | ATCGAT | 2 cut(s) | 1805, 2879 |
| BseJI | GATNNNNATC | 1 cut(s) | 686 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 470, 1755, 2829, 3018, 3019, 3147 |
| BseMI | GCAATG | 1 cut(s) | 587 |
| BseMII | CTCAG | 8 cut(s) | 50, 273, 1191, 1425, 2265, 2499, 3084, 3336 |
| BseNI | ACTGG | 4 cut(s) | 108, 1777, 2851, 3165 |
| BseRI | GAGGAG | 6 cut(s) | 854, 908, 953, 1928, 1982, 2027 |
| BseSI | GKGCMC | 1 cut(s) | 1620 |
| BsgI | GTGCAG | 2 cut(s) | 585, 2711 |
| Bsh1236I | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1213, 2287 |
| BshFI | GGCC | 7 cut(s) | 1469, 1543, 1664, 2543, 2617, 2738, 3068 |
| BshTI | ACCGGT | 2 cut(s) | 1208, 2282 |
| BshVI | ATCGAT | 2 cut(s) | 1805, 2879 |
| BsiEI | CGRYCG | 2 cut(s) | 1213, 2287 |
| BsiHKAI | GWGCWC | 3 cut(s) | 75, 188, 1620 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1479, 2553 |
| BsiSI | CCGG | 5 cut(s) | 227, 1091, 1209, 2165, 2283 |
| BslFI | GGGAC | 4 cut(s) | 1549, 2623, 3135, 3212 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 470, 1755, 2829, 3018, 3019, 3147 |
| BsmAI | GTCTC | 1 cut(s) | 493 |
| BsmBI | CGTCTC | 1 cut(s) | 493 |
| BsmFI | GGGAC | 4 cut(s) | 1549, 2623, 3135, 3212 |
| BsmI | GAATGC | 5 cut(s) | 620, 1411, 1765, 2485, 2839 |
| BsnI | GGCC | 7 cut(s) | 1469, 1543, 1664, 2543, 2617, 2738, 3068 |
| BsoBI | CYCGRG | 2 cut(s) | 1479, 2553 |
| Bsp1286I | GDGCHC | 5 cut(s) | 54, 75, 188, 315, 1620 |
| Bsp1407I | TGTACA | 3 cut(s) | 1050, 2124, 3270 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2274 |
| Bsp68I | TCGCGA | 1 cut(s) | 257 |
| BspANI | GGCC | 7 cut(s) | 1469, 1543, 1664, 2543, 2617, 2738, 3068 |
| BspCNI | CTCAG | 8 cut(s) | 49, 274, 1192, 1426, 2266, 2500, 3085, 3335 |
| BspDI | ATCGAT | 2 cut(s) | 1805, 2879 |
| BspFNI | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| BspLI | GGNNCC | 1 cut(s) | 278 |
| BspMAI | CTGCAG | 2 cut(s) | 496, 730 |
| BspPI | GGATC | 4 cut(s) | 368, 511, 1834, 2908 |
| BspQI | GCTCTTC | 1 cut(s) | 630 |
| BspTI | CTTAAG | 2 cut(s) | 593, 3431 |
| BsrBI | CCGCTC | 2 cut(s) | 961, 2035 |
| BsrDI | GCAATG | 1 cut(s) | 587 |
| BsrFI | RCCGGY | 4 cut(s) | 1090, 1208, 2164, 2282 |
| BsrGI | TGTACA | 3 cut(s) | 1050, 2124, 3270 |
| BsrI | ACTGG | 4 cut(s) | 108, 1777, 2851, 3165 |
| BssAI | RCCGGY | 4 cut(s) | 1090, 1208, 2164, 2282 |
| Bst2UI | CCWGG | 1 cut(s) | 3348 |
| Bst4CI | ACNGT | 4 cut(s) | 335, 393, 841, 1915 |
| Bst6I | CTCTTC | 3 cut(s) | 630, 3124, 3378 |
| BstAFI | CTTAAG | 2 cut(s) | 593, 3431 |
| BstAUI | TGTACA | 3 cut(s) | 1050, 2124, 3270 |
| BstEII | GGTNACC | 1 cut(s) | 7 |
| BstFNI | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| BstHHI | GCGC | 8 cut(s) | 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677 |
| BstMAI | GTCTC | 1 cut(s) | 493 |
| BstMCI | CGRYCG | 2 cut(s) | 1213, 2287 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 876, 1094, 1466, 1950, 2168, 2540, 2689 |
| BstNI | CCWGG | 1 cut(s) | 3348 |
| BstNSI | RCATGY | 3 cut(s) | 361, 3082, 3271 |
| BstPI | GGTNACC | 1 cut(s) | 7 |
| BstSCI | CCNGG | 2 cut(s) | 226, 3346 |
| BstSFI | CTRYAG | 5 cut(s) | 201, 492, 726, 1848, 2922 |
| BstSLI | GKGCMC | 1 cut(s) | 1620 |
| BstUI | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| BstX2I | RGATCY | 2 cut(s) | 1839, 2913 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1672, 2746 |
| BstYI | RGATCY | 2 cut(s) | 1839, 2913 |
| Bsu15I | ATCGAT | 2 cut(s) | 1805, 2879 |
| BsuRI | GGCC | 7 cut(s) | 1469, 1543, 1664, 2543, 2617, 2738, 3068 |
| BsuTUI | ATCGAT | 2 cut(s) | 1805, 2879 |
| BtgZI | GCGATG | 8 cut(s) | 937, 1382, 1475, 1796, 2011, 2456, 2549, 2870 |
| BtsI | GCAGTG | 4 cut(s) | 1572, 1665, 2646, 2739 |
| BtsIMutI | CAGTG | 6 cut(s) | 389, 427, 1572, 1665, 2646, 2739 |
| BtuMI | TCGCGA | 1 cut(s) | 257 |
| CaiI | CAGNNNCTG | 1 cut(s) | 500 |
| CfoI | GCGC | 8 cut(s) | 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677 |
| Cfr10I | RCCGGY | 4 cut(s) | 1090, 1208, 2164, 2282 |
| Cfr13I | GGNCC | 2 cut(s) | 1189, 2263 |
| ClaI | ATCGAT | 2 cut(s) | 1805, 2879 |
| CseI | GACGC | 2 cut(s) | 992, 2066 |
| CsiI | ACCWGGT | 1 cut(s) | 3346 |
| CspAI | ACCGGT | 2 cut(s) | 1208, 2282 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 1592, 1627, 2666, 2701, 2920, 2955 |
| EaeI | YGGCCR | 5 cut(s) | 1467, 1662, 2541, 2736, 3066 |
| Eam1104I | CTCTTC | 3 cut(s) | 630, 3124, 3378 |
| EarI | CTCTTC | 3 cut(s) | 630, 3124, 3378 |
| EciI | GGCGGA | 3 cut(s) | 958, 2032, 3345 |
| Ecl136II | GAGCTC | 2 cut(s) | 73, 186 |
| Eco147I | AGGCCT | 2 cut(s) | 1543, 2617 |
| Eco24I | GRGCYC | 4 cut(s) | 54, 75, 188, 315 |
| Eco47I | GGWCC | 2 cut(s) | 1189, 2263 |
| Eco53kI | GAGCTC | 2 cut(s) | 73, 186 |
| Eco57I | CTGAAG | 3 cut(s) | 66, 3020, 3402 |
| Eco88I | CYCGRG | 2 cut(s) | 1479, 2553 |
| Eco91I | GGTNACC | 1 cut(s) | 7 |
| EcoICRI | GAGCTC | 2 cut(s) | 73, 186 |
| EcoO65I | GGTNACC | 1 cut(s) | 7 |
| EcoRI | GAATTC | 1 cut(s) | 408 |
| EcoRII | CCWGG | 1 cut(s) | 3346 |
| EcoT22I | ATGCAT | 1 cut(s) | 622 |
| EcoT38I | GRGCYC | 4 cut(s) | 54, 75, 188, 315 |
| Esp3I | CGTCTC | 1 cut(s) | 493 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 284, 316, 3414, 3446 |
| FaqI | GGGAC | 4 cut(s) | 1549, 2623, 3135, 3212 |
| FauI | CCCGC | 2 cut(s) | 1265, 2339 |
| FauNDI | CATATG | 1 cut(s) | 436 |
| FbaI | TGATCA | 5 cut(s) | 1062, 1167, 2136, 2241, 2998 |
| FblI | GTMKAC | 2 cut(s) | 42, 2976 |
| FokI | GGATG | 9 cut(s) | 308, 573, 1409, 1757, 1805, 2483, 2831, 2879, 3149 |
| FriOI | GRGCYC | 4 cut(s) | 54, 75, 188, 315 |
| FspBI | CTAG | 9 cut(s) | 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354 |
| GlaI | GCGC | 8 cut(s) | 1071, 1077, 1089, 1602, 2145, 2151, 2163, 2676 |
| HaeIII | GGCC | 7 cut(s) | 1469, 1543, 1664, 2543, 2617, 2738, 3068 |
| HapII | CCGG | 5 cut(s) | 227, 1091, 1209, 2165, 2283 |
| HgaI | GACGC | 2 cut(s) | 992, 2066 |
| HhaI | GCGC | 8 cut(s) | 1072, 1078, 1090, 1603, 2146, 2152, 2164, 2677 |
| Hin6I | GCGC | 8 cut(s) | 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675 |
| HinP1I | GCGC | 8 cut(s) | 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675 |
| HincII | GTYRAC | 2 cut(s) | 736, 3058 |
| HindII | GTYRAC | 2 cut(s) | 736, 3058 |
| HindIII | AAGCTT | 4 cut(s) | 536, 602, 1173, 2247 |
| HpaI | GTTAAC | 1 cut(s) | 736 |
| HpaII | CCGG | 5 cut(s) | 227, 1091, 1209, 2165, 2283 |
| HphI | GGTGA | 7 cut(s) | 16, 1022, 1306, 2096, 2380, 3410, 3472 |
| Hpy188III | TCNNGA | 8 cut(s) | 256, 501, 1115, 1301, 1479, 2189, 2375, 2553 |
| HpyCH4III | ACNGT | 4 cut(s) | 335, 393, 841, 1915 |
| HpyCH4IV | ACGT | 1 cut(s) | 3144 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 876, 1094, 1466, 1950, 2168, 2540, 2689 |
| HpySE526I | ACGT | 1 cut(s) | 3144 |
| HspAI | GCGC | 8 cut(s) | 1070, 1076, 1088, 1601, 2144, 2150, 2162, 2675 |
| Ksp22I | TGATCA | 5 cut(s) | 1062, 1167, 2136, 2241, 2998 |
| KspAI | GTTAAC | 1 cut(s) | 736 |
| LguI | GCTCTTC | 1 cut(s) | 630 |
| LmnI | GCTCC | 2 cut(s) | 966, 2040 |
| LweI | GCATC | 8 cut(s) | 232, 607, 781, 1735, 1783, 2809, 2857, 3127 |
| MabI | ACCWGGT | 1 cut(s) | 3346 |
| MaeI | CTAG | 9 cut(s) | 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354 |
| MaeII | ACGT | 1 cut(s) | 3144 |
| MaeIII | GTNAC | 1 cut(s) | 7 |
| MbiI | CCGCTC | 2 cut(s) | 961, 2035 |
| MfeI | CAATTG | 2 cut(s) | 1319, 2393 |
| MflI | RGATCY | 2 cut(s) | 1839, 2913 |
| MhlI | GDGCHC | 5 cut(s) | 54, 75, 188, 315, 1620 |
| MlsI | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| MluNI | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| MlyI | GAGTC | 7 cut(s) | 28, 68, 1559, 1655, 2633, 2729, 3315 |
| MmeI | TCCRAC | 7 cut(s) | 42, 385, 502, 538, 1867, 2703, 2941 |
| Mox20I | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| Mph1103I | ATGCAT | 1 cut(s) | 622 |
| MroXI | GAANNNNTTC | 4 cut(s) | 482, 746, 1418, 2492 |
| MscI | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| MseI | TTAA | 5 cut(s) | 594, 735, 843, 1917, 3432 |
| MslI | CAYNNNNRTG | 9 cut(s) | 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183 |
| Msp20I | TGGCCA | 3 cut(s) | 1664, 2738, 3068 |
| MspA1I | CMGCKG | 2 cut(s) | 1580, 2654 |
| MspCI | CTTAAG | 2 cut(s) | 593, 3431 |
| MspI | CCGG | 5 cut(s) | 227, 1091, 1209, 2165, 2283 |
| MspR9I | CCNGG | 2 cut(s) | 228, 3348 |
| MunI | CAATTG | 2 cut(s) | 1319, 2393 |
| Mva1269I | GAATGC | 5 cut(s) | 620, 1411, 1765, 2485, 2839 |
| MvaI | CCWGG | 1 cut(s) | 3348 |
| MvnI | CGCG | 5 cut(s) | 257, 1076, 1088, 2150, 2162 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 876, 1094, 1466, 1950, 2168, 2540, 2689 |
| NciI | CCSGG | 1 cut(s) | 228 |
| NdeI | CATATG | 1 cut(s) | 436 |
| NlaIV | GGNNCC | 1 cut(s) | 278 |
| NmeAIII | GCCGAG | 2 cut(s) | 1856, 2930 |
| NruI | TCGCGA | 1 cut(s) | 257 |
| NsiI | ATGCAT | 1 cut(s) | 622 |
| NspI | RCATGY | 3 cut(s) | 361, 3082, 3271 |
| PaeR7I | CTCGAG | 2 cut(s) | 1479, 2553 |
| PceI | AGGCCT | 2 cut(s) | 1543, 2617 |
| PciI | ACATGT | 2 cut(s) | 357, 3267 |
| PciSI | GCTCTTC | 1 cut(s) | 630 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1457, 2531 |
| PctI | GAATGC | 5 cut(s) | 620, 1411, 1765, 2485, 2839 |
| PdmI | GAANNNNTTC | 4 cut(s) | 482, 746, 1418, 2492 |
| PfeI | GAWTC | 7 cut(s) | 133, 384, 829, 1297, 1903, 2371, 3443 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1755, 2829, 3147 |
| PinAI | ACCGGT | 2 cut(s) | 1208, 2282 |
| PleI | GAGTC | 7 cut(s) | 28, 67, 1558, 1654, 2632, 2728, 3314 |
| PpsI | GAGTC | 7 cut(s) | 28, 67, 1558, 1654, 2632, 2728, 3314 |
| PscI | ACATGT | 2 cut(s) | 357, 3267 |
| Psp124BI | GAGCTC | 2 cut(s) | 75, 188 |
| Psp6I | CCWGG | 1 cut(s) | 3346 |
| PspEI | GGTNACC | 1 cut(s) | 7 |
| PspGI | CCWGG | 1 cut(s) | 3346 |
| PspN4I | GGNNCC | 1 cut(s) | 278 |
| PspPI | GGNCC | 2 cut(s) | 1189, 2263 |
| PstI | CTGCAG | 2 cut(s) | 496, 730 |
| PstNI | CAGNNNCTG | 1 cut(s) | 500 |
| PsuI | RGATCY | 2 cut(s) | 1839, 2913 |
| RruI | TCGCGA | 1 cut(s) | 257 |
| RseI | CAYNNNNRTG | 9 cut(s) | 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183 |
| SacI | GAGCTC | 2 cut(s) | 75, 188 |
| SapI | GCTCTTC | 1 cut(s) | 630 |
| SaqAI | TTAA | 5 cut(s) | 594, 735, 843, 1917, 3432 |
| Sau96I | GGNCC | 2 cut(s) | 1189, 2263 |
| SchI | GAGTC | 7 cut(s) | 28, 68, 1559, 1655, 2633, 2729, 3315 |
| ScrFI | CCNGG | 2 cut(s) | 228, 3348 |
| SduI | GDGCHC | 5 cut(s) | 54, 75, 188, 315, 1620 |
| SexAI | ACCWGGT | 1 cut(s) | 3346 |
| SfaNI | GCATC | 8 cut(s) | 232, 607, 781, 1735, 1783, 2809, 2857, 3127 |
| SfcI | CTRYAG | 5 cut(s) | 201, 492, 726, 1848, 2922 |
| Sfr274I | CTCGAG | 2 cut(s) | 1479, 2553 |
| SgrAI | CRCCGGYG | 2 cut(s) | 1090, 2164 |
| SinI | GGWCC | 2 cut(s) | 1189, 2263 |
| SlaI | CTCGAG | 2 cut(s) | 1479, 2553 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 125, 1046, 1227, 1590, 1623, 2120, 2301, 2664, 3183 |
| SseBI | AGGCCT | 2 cut(s) | 1543, 2617 |
| SspMI | CTAG | 9 cut(s) | 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354 |
| SstI | GAGCTC | 2 cut(s) | 75, 188 |
| StuI | AGGCCT | 2 cut(s) | 1543, 2617 |
| StyD4I | CCNGG | 2 cut(s) | 226, 3346 |
| TaaI | ACNGT | 4 cut(s) | 335, 393, 841, 1915 |
| TaiI | ACGT | 1 cut(s) | 3147 |
| TatI | WGTACW | 7 cut(s) | 330, 783, 1050, 1683, 2124, 2757, 3270 |
| TauI | GCSGC | 8 cut(s) | 771, 809, 974, 1472, 1580, 2048, 2546, 2654 |
| TfiI | GAWTC | 7 cut(s) | 133, 384, 829, 1297, 1903, 2371, 3443 |
| Tru1I | TTAA | 5 cut(s) | 594, 735, 843, 1917, 3432 |
| Tru9I | TTAA | 5 cut(s) | 594, 735, 843, 1917, 3432 |
| TscAI | CASTG | 6 cut(s) | 396, 427, 1579, 1672, 2653, 2746 |
| TspGWI | ACGGA | 5 cut(s) | 60, 1146, 1426, 2220, 2500 |
| TspRI | CASTG | 6 cut(s) | 396, 427, 1579, 1672, 2653, 2746 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1755, 2829, 3147 |
| Vha464I | CTTAAG | 2 cut(s) | 593, 3431 |
| VneI | GTGCAC | 1 cut(s) | 1616 |
| VpaK11BI | GGWCC | 2 cut(s) | 1189, 2263 |
| XapI | RAATTY | 7 cut(s) | 368, 408, 514, 1238, 2312, 3204, 3463 |
| XbaI | TCTAGA | 2 cut(s) | 1114, 2188 |
| XceI | RCATGY | 3 cut(s) | 361, 3082, 3271 |
| XhoI | CTCGAG | 2 cut(s) | 1479, 2553 |
| XmiI | GTMKAC | 2 cut(s) | 42, 2976 |
| XmnI | GAANNNNTTC | 4 cut(s) | 482, 746, 1418, 2492 |
| XspI | CTAG | 9 cut(s) | 413, 719, 821, 1115, 1341, 2189, 2415, 3125, 3354 |
| Zsp2I | ATGCAT | 1 cut(s) | 622 |