Rroxscaffold_2G00152540

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014629
Physical Location & Seq
Reverse (-)
89457020 .. 89459894
2875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152540.1

Sequence Viewer

Length: 1899 bp
ATGGCGAGTGATAACTTGTGTTTGATATACAGGTACTTCCCTGATGGGATTGACATCTACTTTGACAATGTGGGGTTTGAAATGCTAGAGGCTGCAGTTGTTAACATGAACACCTTCGGTAGAGTTGCTGTCTGCGGCGTGATCTCCGAGTACATTGACGCTACGAAGCGAGCCGCACCCAATATGCTAGATGTTGTGTACAAGAGAATTAAAATCCAAGGGTTTCTAGCAGCCGATCATATGAATGTGTTTCCGGATTTTCTTTCCACCACAACTGATCATCTTCGTACAGGAAAATTGCATGCGGTTGAAGACATCTCAGATGGTGTGGAGAGTTTCCCATCGGCTTTCATTGGACTTTTTCGTGGTCATAACACTGGAAAGAAAATGCTCAAGCAAATCCACGCCCACGTCCTCACTTCCACCCGACCCGAAAACCCCTACGCCATCGCGCCGCTCCTCTCCGCCGCCGCCAAAGACGCTTCCTTGTTCTCCTACGCTTGCTCCATCTTCAAACACCACCATCATCACCACCGCAACACTTTCATGTACAACACCATGATCAGAGCGCACGCGCAATCACACGCGCCGGTGGCTGCGGTCATGTGCTATCTAGACTTGTTGAGTTACGGATTGATTGCTAATAAGTTTACTTTCCCGCCATTGATCAAAGCTTGCTCGATTTTGGTCCATAATTCTGAGCTAACCGGAAGGTTGGTTCATGCCCATGTTGTGAAATTCGGGTTTGGAGATGACCCGTTTGTTGTTAGCGAGCTAATCGAGTTTTACTCGGTGATTCTTGAGATGGGTGCTGCCCAATTGGTGTTTGATAAAAGTCCTAGCAAAGATGTGGTGGTGTGGACGGCGATGGTTGATGGGTATGGGAAGATTGGGGATGTTGAGAATGCACGGAAGGTGTTCGATGAAATGCCTGAGAGAAATGCTGTGTCGTGGAGTGCGATGATGGCTGCGTATTCTCGAGTGAGTGAATTTAGAGAGGTGGTTTGTTTGTTTAGGCAAATGCAAGAGGTGGGGACGAGGCCTAATGAGTCTGTTCTTGTTAGTGTTCTCACTGCCGCTGCTCATTTGGGTGCGGTGGCGCAAGGGCTGTGGGTGCACTCCTATGCTAAGAGGCACGGGCTTGAGTCGAATAGGATACTGGCCACTGCATTGGTTGATATGTATTCCAAATGTGGCTATGTGGAAGCAGCTATGAAGGTTTTTGAGGGCATTTGTAATAAGGATGCCAGAGCGTGGAATGCTATGATTACTGGGGTTGCGATGAATGGGGATGCAAGGAAATCGATTGAGCTGTTTGATAAAATGGTTGTAGATAAGATCCAACCTACAGAAACCACATTTGTTGCTGTTCTCTCGGCTTGTACCCATGCAAAAATGGTAGACAAGGGACTTGACCTGTTTGATCAAATGAGTACCCTTTATGGGGTTGAACCCGGGCTTCAGCACTATGCTTGTGTTGTTGACCTCTTGGCCAGAGCAGGCATGGTAGAGGAAGCTGAGAAGTTTATAGAGGACAAGATGGGAGGACTAGGAAGAGGGGATGCCAATGTGTGGGGGGCGTTACTGGGTGCGTGTAGAGTTCATGGGAATGTTGAACTAGGGGACAGAATTTGGAAAAAGCTGGCTGATATGGGAGTAGCCGATTGTGGTATTCATGTTCTTTCATATAACATGTACAAGGAAGCTGGCTTGGAATTGGAGGCAAAGAGAGTCCGAGATATGATCTCAGAAGGCAGAATGAAGAAGAAACCTGGTTCTAGTGTGATAGAGGTAAATGGAGTGGCTGAAGAGTTCATTGTTGGTGATCTTTGTCCTCCACAAGCACAAGAAATGCTTAAGATACTTGATTCCTCCGCAACCATTTTTGTAAAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

632

Amino Acids

69.81

Weight (kDa)

6.18

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 282 - 314 1.3e-06 PPR repeat family
PPR_1 PF12854 283 - 310 6e-06 PPR repeat
PPR PF01535 285 - 314 2.3e-07 PPR repeat
PPR_2 PF13041 415 - 462 1.8e-07 PPR repeat family
PPR_long PF17177 427 - 516 3.8e-06 Pentacotripeptide-repeat region of PRORP
E_motif PF20431 535 - 597 5.3e-07 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03350
malus_domestica MD02G1033000.v1.1
prunus_persica Prupe.7G242300_v2.0.a1
pyrus_communis pycom02g01480 pycom02g02710 pycom04g20500
rosa_chinensis RchiOBHm_Chr2g0088571
rosa_laevigata RLG00000015966
rosa_multiflora Rmu_co8371145.1_g000001 Rmu_sc0004733.1_g000003
rosa_roxburghii Rroxscaffold_2G00152540
rosa_rugosa Rorug01G0485200
rosa_samantha Rh2AG040500 Rh2BG039200 Rh2CG040100 Rh2DG039500
rosa_wichuraiana Rw2G003140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1254, 1572
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 1 cut(s) 1401
AccII CGCG 3 cut(s) 452, 575, 587
AccIII TCCGGA 1 cut(s) 253
AclWI GGATC 1 cut(s) 1333
AcoI YGGCCR 2 cut(s) 1161, 1491
AcsI RAATTY 3 cut(s) 737, 989, 1629
AcuI CTGAAG 2 cut(s) 1445, 1827
AfaI GTAC 8 cut(s) 35, 152, 200, 289, 551, 1384, 1435, 1697
AfiI CCNNNNNNNGG 4 cut(s) 1254, 1443, 1444, 1572
AflII CTTAAG 1 cut(s) 1856
AflIII ACRYGT 1 cut(s) 1692
AgsI TTSAA 5 cut(s) 80, 311, 514, 1451, 1616
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 1 cut(s) 1771
AloI GAACNNNNNNTCC 2 cut(s) 702, 734
AluBI AGCT 8 cut(s) 674, 703, 775, 1211, 1312, 1517, 1642, 1706
AluI AGCT 8 cut(s) 674, 703, 775, 1211, 1312, 1517, 1642, 1706
Alw21I GWGCWC 1 cut(s) 1119
Alw44I GTGCAC 1 cut(s) 1115
AlwI GGATC 1 cut(s) 1333
Ama87I CYCGRG 2 cut(s) 978, 1454
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 3 cut(s) 1040, 1161, 1491
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 7 cut(s) 92, 230, 596, 812, 968, 1079, 1208
ApoI RAATTY 3 cut(s) 737, 989, 1629
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
Asp700I GAANNNNTTC 2 cut(s) 113, 917
AspLEI GCGC 5 cut(s) 454, 571, 577, 589, 1102
AspS9I GGNCC 1 cut(s) 688
AsuC2I CCSGG 2 cut(s) 1455, 1456
AsuHPI GGTGA 3 cut(s) 521, 805, 1835
AvaI CYCGRG 2 cut(s) 978, 1454
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 1 cut(s) 1119
BalI TGGCCA 2 cut(s) 1163, 1493
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 1119
BbvI GCAGC 7 cut(s) 79, 242, 583, 799, 955, 1066, 1220
BceAI ACGGC 1 cut(s) 879
BcgI CGANNNNNNTGC 2 cut(s) 1284, 1318
BciT130I CCWGG 1 cut(s) 1773
BciVI GTATCC 1 cut(s) 1149
BclI TGATCA 4 cut(s) 277, 561, 666, 1423
BcnI CCSGG 2 cut(s) 1455, 1456
BfaI CTAG 8 cut(s) 86, 188, 227, 614, 840, 1550, 1619, 1779
BfmI CTRYAG 2 cut(s) 93, 1347
BfrI CTTAAG 1 cut(s) 1856
BfuI GTATCC 1 cut(s) 1149
Bme1390I CCNGG 3 cut(s) 1455, 1456, 1773
Bme18I GGWCC 1 cut(s) 688
BmeT110I CYCGRG 2 cut(s) 978, 1454
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 688
BmrFI CCNGG 3 cut(s) 1455, 1456, 1773
BmrI ACTGGG 2 cut(s) 1281, 1595
BmsI GCATC 3 cut(s) 1234, 1282, 1552
BmuI ACTGGG 2 cut(s) 1281, 1595
BpiI GAAGAC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 773, 805
BpuEI CTTGAG 3 cut(s) 377, 821, 1163
BpuMI CCSGG 2 cut(s) 1455, 1456
Bsa29I ATCGAT 1 cut(s) 1304
BsaBI GATNNNNATC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 217, 1454
BsaWI WCCGGW 2 cut(s) 253, 707
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 1254, 1443, 1444, 1572
Bse118I RCCGGY 1 cut(s) 589
Bse1I ACTGG 4 cut(s) 382, 1164, 1276, 1590
Bse8I GATNNNNATC 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 1773
BseCI ATCGAT 1 cut(s) 1304
BseDI CCNNGG 2 cut(s) 217, 1454
BseGI GGATG 4 cut(s) 901, 1249, 1297, 1567
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 4 cut(s) 1254, 1443, 1444, 1572
BseMII CTCAG 5 cut(s) 333, 690, 924, 1509, 1761
BseNI ACTGG 4 cut(s) 382, 1164, 1276, 1590
BseRI GAGGAG 1 cut(s) 449
BseSI GKGCMC 1 cut(s) 1119
BseXI GCAGC 7 cut(s) 79, 242, 583, 799, 955, 1066, 1220
Bsh1236I CGCG 3 cut(s) 452, 575, 587
BshFI GGCC 3 cut(s) 1042, 1163, 1493
BshVI ATCGAT 1 cut(s) 1304
BsiHKAI GWGCWC 1 cut(s) 1119
BsiHKCI CYCGRG 2 cut(s) 978, 1454
BsiSI CCGG 4 cut(s) 254, 590, 708, 1455
BslFI GGGAC 3 cut(s) 1048, 1422, 1637
BslI CCNNNNNNNGG 4 cut(s) 1254, 1443, 1444, 1572
BsmFI GGGAC 3 cut(s) 1048, 1422, 1637
BsmI GAATGC 2 cut(s) 910, 1264
BsnI GGCC 3 cut(s) 1042, 1163, 1493
BsoBI CYCGRG 2 cut(s) 978, 1454
Bsp1286I GDGCHC 1 cut(s) 1119
Bsp13I TCCGGA 1 cut(s) 253
Bsp1407I TGTACA 3 cut(s) 198, 549, 1695
Bsp143I GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
BspANI GGCC 3 cut(s) 1042, 1163, 1493
BspCNI CTCAG 5 cut(s) 332, 691, 925, 1510, 1760
BspDI ATCGAT 1 cut(s) 1304
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 3 cut(s) 452, 575, 587
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 1333
BspTI CTTAAG 1 cut(s) 1856
BsrBI CCGCTC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 589
BsrGI TGTACA 3 cut(s) 198, 549, 1695
BsrI ACTGG 4 cut(s) 382, 1164, 1276, 1590
BssAI RCCGGY 1 cut(s) 589
BssECI CCNNGG 2 cut(s) 217, 1454
BssMI GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
BssT1I CCWWGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 1773
Bst6I CTCTTC 2 cut(s) 1549, 1803
BstAFI CTTAAG 1 cut(s) 1856
BstAUI TGTACA 3 cut(s) 198, 549, 1695
BstC8I GCNNGC 9 cut(s) 171, 303, 502, 573, 676, 773, 1501, 1644, 1708
BstDEI CTNAG 6 cut(s) 319, 699, 933, 1128, 1518, 1747
BstF5I GGATG 4 cut(s) 901, 1249, 1297, 1567
BstFNI CGCG 3 cut(s) 452, 575, 587
BstHHI GCGC 5 cut(s) 454, 571, 577, 589, 1102
BstKTI GATC 9 cut(s) 144, 238, 280, 564, 669, 1341, 1426, 1746, 1828
BstMBI GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
BstMWI GCNNNNNNNGC 5 cut(s) 479, 593, 965, 1114, 1259
BstNI CCWGG 1 cut(s) 1773
BstNSI RCATGY 2 cut(s) 305, 1696
BstSCI CCNGG 3 cut(s) 1453, 1454, 1771
BstSFI CTRYAG 2 cut(s) 93, 1347
BstSLI GKGCMC 1 cut(s) 1119
BstUI CGCG 3 cut(s) 452, 575, 587
BstV1I GCAGC 7 cut(s) 79, 242, 583, 799, 955, 1066, 1220
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 1338
BstXI CCANNNNNNTGG 1 cut(s) 1171
BstYI RGATCY 1 cut(s) 1338
Bsu15I ATCGAT 1 cut(s) 1304
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 3 cut(s) 1042, 1163, 1493
BsuTUI ATCGAT 1 cut(s) 1304
BtgZI GCGATG 4 cut(s) 433, 881, 974, 1295
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 901, 1249, 1297, 1567
BtsI GCAGTG 2 cut(s) 1071, 1164
BtsIMutI CAGTG 3 cut(s) 375, 1071, 1164
Cac8I GCNNGC 9 cut(s) 171, 303, 502, 573, 676, 773, 1501, 1644, 1708
CfoI GCGC 5 cut(s) 454, 571, 577, 589, 1102
Cfr10I RCCGGY 1 cut(s) 589
Cfr13I GGNCC 1 cut(s) 688
Cfr9I CCCGGG 1 cut(s) 1454
ClaI ATCGAT 1 cut(s) 1304
CseI GACGC 2 cut(s) 167, 488
CsiI ACCWGGT 1 cut(s) 1771
Csp6I GTAC 8 cut(s) 34, 151, 199, 288, 550, 1383, 1434, 1696
CspCI CAANNNNNGTGG 4 cut(s) 1091, 1126, 1345, 1380
CviQI GTAC 8 cut(s) 34, 151, 199, 288, 550, 1383, 1434, 1696
DdeI CTNAG 6 cut(s) 319, 699, 933, 1128, 1518, 1747
DpnI GATC 9 cut(s) 143, 237, 279, 563, 668, 1340, 1425, 1745, 1827
DpnII GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
EaeI YGGCCR 2 cut(s) 1161, 1491
Eam1104I CTCTTC 2 cut(s) 1549, 1803
EarI CTCTTC 2 cut(s) 1549, 1803
EciI GGCGGA 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 1042
Eco47I GGWCC 1 cut(s) 688
Eco57I CTGAAG 2 cut(s) 1445, 1827
Eco88I CYCGRG 2 cut(s) 978, 1454
EcoRII CCWGG 1 cut(s) 1771
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FalI AAGNNNNNCTT 2 cut(s) 1839, 1871
FaqI GGGAC 3 cut(s) 1048, 1422, 1637
FauI CCCGC 1 cut(s) 666
FauNDI CATATG 1 cut(s) 240
FbaI TGATCA 4 cut(s) 277, 561, 666, 1423
FblI GTMKAC 1 cut(s) 1401
FokI GGATG 4 cut(s) 908, 1256, 1304, 1574
FspBI CTAG 8 cut(s) 86, 188, 227, 614, 840, 1550, 1619, 1779
GlaI GCGC 5 cut(s) 453, 570, 576, 588, 1101
HaeIII GGCC 3 cut(s) 1042, 1163, 1493
HapII CCGG 4 cut(s) 254, 590, 708, 1455
HgaI GACGC 2 cut(s) 167, 488
HhaI GCGC 5 cut(s) 454, 571, 577, 589, 1102
Hin6I GCGC 5 cut(s) 452, 569, 575, 587, 1100
HinP1I GCGC 5 cut(s) 452, 569, 575, 587, 1100
HincII GTYRAC 2 cut(s) 103, 1483
HindII GTYRAC 2 cut(s) 103, 1483
HindIII AAGCTT 1 cut(s) 672
HinfI GANTC 5 cut(s) 796, 1049, 1145, 1731, 1868
HpaI GTTAAC 1 cut(s) 103
HpaII CCGG 4 cut(s) 254, 590, 708, 1455
HphI GGTGA 3 cut(s) 521, 805, 1835
Hpy166II GTNNAC 7 cut(s) 103, 199, 651, 861, 1117, 1402, 1483
Hpy188I TCNGA 6 cut(s) 148, 322, 566, 700, 1736, 1750
Hpy188III TCNNGA 4 cut(s) 254, 614, 800, 978
Hpy8I GTNNAC 7 cut(s) 103, 199, 651, 861, 1117, 1402, 1483
HpyAV CCTTC 5 cut(s) 124, 705, 907, 1210, 1745
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 8 cut(s) 95, 301, 908, 1024, 1117, 1169, 1295, 1391
HpyF10VI GCNNNNNNNGC 5 cut(s) 479, 593, 965, 1114, 1259
HpyF3I CTNAG 6 cut(s) 319, 699, 933, 1128, 1518, 1747
HpySE526I ACGT 1 cut(s) 411
HspAI GCGC 5 cut(s) 452, 569, 575, 587, 1100
Kpn2I TCCGGA 1 cut(s) 253
Ksp22I TGATCA 4 cut(s) 277, 561, 666, 1423
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
LmnI GCTCC 2 cut(s) 462, 509
Lsp1109I GCAGC 7 cut(s) 79, 242, 583, 799, 955, 1066, 1220
LweI GCATC 3 cut(s) 1234, 1282, 1552
MabI ACCWGGT 1 cut(s) 1771
MaeI CTAG 8 cut(s) 86, 188, 227, 614, 840, 1550, 1619, 1779
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 626, 1581
MalI GATC 9 cut(s) 143, 237, 279, 563, 668, 1340, 1425, 1745, 1827
MbiI CCGCTC 1 cut(s) 457
MboI GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
MboII GAAGA 8 cut(s) 275, 323, 502, 898, 1566, 1774, 1777, 1820
MfeI CAATTG 1 cut(s) 818
MflI RGATCY 1 cut(s) 1338
MhlI GDGCHC 1 cut(s) 1119
MlsI TGGCCA 2 cut(s) 1163, 1493
MluCI AATT 8 cut(s) 207, 296, 694, 737, 818, 989, 1629, 1715
MluNI TGGCCA 2 cut(s) 1163, 1493
MlyI GAGTC 3 cut(s) 1058, 1154, 1740
MmeI TCCRAC 1 cut(s) 1366
Mox20I TGGCCA 2 cut(s) 1163, 1493
MroI TCCGGA 1 cut(s) 253
MroXI GAANNNNTTC 2 cut(s) 113, 917
MscI TGGCCA 2 cut(s) 1163, 1493
MseI TTAA 3 cut(s) 102, 210, 1857
MslI CAYNNNNRTG 6 cut(s) 243, 545, 726, 1089, 1122, 1608
Msp20I TGGCCA 2 cut(s) 1163, 1493
MspA1I CMGCKG 1 cut(s) 1079
MspCI CTTAAG 1 cut(s) 1856
MspI CCGG 4 cut(s) 254, 590, 708, 1455
MspR9I CCNGG 3 cut(s) 1455, 1456, 1773
MunI CAATTG 1 cut(s) 818
Mva1269I GAATGC 2 cut(s) 910, 1264
MvaI CCWGG 1 cut(s) 1773
MvnI CGCG 3 cut(s) 452, 575, 587
MwoI GCNNNNNNNGC 5 cut(s) 479, 593, 965, 1114, 1259
NciI CCSGG 2 cut(s) 1455, 1456
NdeI CATATG 1 cut(s) 240
NdeII GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
NmeAIII GCCGAG 1 cut(s) 1355
NspI RCATGY 2 cut(s) 305, 1696
PaeI GCATGC 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 978
PceI AGGCCT 1 cut(s) 1042
PciI ACATGT 1 cut(s) 1692
PcsI WCGNNNNNNNCGW 1 cut(s) 956
PctI GAATGC 2 cut(s) 910, 1264
PdmI GAANNNNTTC 2 cut(s) 113, 917
PfeI GAWTC 2 cut(s) 796, 1868
PflMI CCANNNNNTGG 2 cut(s) 1254, 1572
PleI GAGTC 3 cut(s) 1057, 1153, 1739
PpsI GAGTC 3 cut(s) 1057, 1153, 1739
PscI ACATGT 1 cut(s) 1692
Psp6I CCWGG 1 cut(s) 1771
PspGI CCWGG 1 cut(s) 1771
PspPI GGNCC 1 cut(s) 688
PstI CTGCAG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 1338
RsaI GTAC 8 cut(s) 35, 152, 200, 289, 551, 1384, 1435, 1697
RsaNI GTAC 8 cut(s) 34, 151, 199, 288, 550, 1383, 1434, 1696
RseI CAYNNNNRTG 6 cut(s) 243, 545, 726, 1089, 1122, 1608
SaqAI TTAA 3 cut(s) 102, 210, 1857
Sau3AI GATC 9 cut(s) 141, 235, 277, 561, 666, 1338, 1423, 1743, 1825
Sau96I GGNCC 1 cut(s) 688
SchI GAGTC 3 cut(s) 1058, 1154, 1740
ScrFI CCNGG 3 cut(s) 1455, 1456, 1773
SduI GDGCHC 1 cut(s) 1119
SexAI ACCWGGT 1 cut(s) 1771
SfaNI GCATC 3 cut(s) 1234, 1282, 1552
SfcI CTRYAG 2 cut(s) 93, 1347
Sfr274I CTCGAG 1 cut(s) 978
SgrAI CRCCGGYG 1 cut(s) 589
SinI GGWCC 1 cut(s) 688
SlaI CTCGAG 1 cut(s) 978
SmaI CCCGGG 1 cut(s) 1456
SmiMI CAYNNNNRTG 6 cut(s) 243, 545, 726, 1089, 1122, 1608
SmlI CTYRAG 5 cut(s) 392, 800, 978, 1142, 1856
SmoI CTYRAG 5 cut(s) 392, 800, 978, 1142, 1856
SphI GCATGC 1 cut(s) 305
Sse9I AATT 8 cut(s) 207, 296, 694, 737, 818, 989, 1629, 1715
SseBI AGGCCT 1 cut(s) 1042
SspMI CTAG 8 cut(s) 86, 188, 227, 614, 840, 1550, 1619, 1779
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 3 cut(s) 1453, 1454, 1771
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 414
TaqI TCGA 6 cut(s) 680, 780, 921, 979, 1148, 1304
TasI AATT 8 cut(s) 207, 296, 694, 737, 818, 989, 1629, 1715
TatI WGTACW 4 cut(s) 150, 198, 549, 1695
TauI GCSGC 6 cut(s) 138, 176, 457, 470, 473, 1079
TfiI GAWTC 2 cut(s) 796, 1868
Tru1I TTAA 3 cut(s) 102, 210, 1857
Tru9I TTAA 3 cut(s) 102, 210, 1857
TscAI CASTG 3 cut(s) 382, 1078, 1171
TseI GCWGC 7 cut(s) 92, 230, 596, 812, 968, 1079, 1208
TspGWI ACGGA 2 cut(s) 645, 925
TspMI CCCGGG 1 cut(s) 1454
TspRI CASTG 3 cut(s) 382, 1078, 1171
Van91I CCANNNNNTGG 2 cut(s) 1254, 1572
Vha464I CTTAAG 1 cut(s) 1856
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 1 cut(s) 688
XapI RAATTY 3 cut(s) 737, 989, 1629
XbaI TCTAGA 1 cut(s) 613
XceI RCATGY 2 cut(s) 305, 1696
XcmI CCANNNNNNNNNTGG 1 cut(s) 1501
XhoI CTCGAG 1 cut(s) 978
XmaI CCCGGG 1 cut(s) 1454
XmiI GTMKAC 1 cut(s) 1401
XmnI GAANNNNTTC 2 cut(s) 113, 917
XspI CTAG 8 cut(s) 86, 188, 227, 614, 840, 1550, 1619, 1779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.