Rmu_co8371145.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8371145.1
OG0014629
Physical Location & Seq
Reverse (-)
2 .. 1031
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8371145.1_g000001.1.cds

Sequence Viewer

Length: 1030 bp
atgattcaaaaaaccgttaaaaccaacgatctcattctcctctgccaaaaatgcaaaaccctaaaccagctcaagcaaatccacgcccacctcctcacttccacccgacccgaaaacccctacgccatcgcaccgctcctctccgccgcctccaaagacgcttccttgttctcctacgcttgctcaatcttcaaacaccaccatcaccaccgcaacactttcatgtacaacaccatgatcagagcgcacacgcaatcacacgcgccggtggctgcggttctgtgctatctagacttgttgaagtacggattgatcgctaataagtttactttccctccattgatcaaagcttgttcgatgttggtccataattctgagctaaccggtcggttggttcatgcccatgttgtgaaattcgggttcggagatgacccgtttgttgttagcgggctaatcgagttttattcggtgattcttgagatgggtgctgcccaattggtgtttgataaaagtcctagcaaagatgtggtggtgtggacggcgatggttgatgggtatgggaagattggggatgttgagaatgcacggaaggtgttcgatgaaatgcctgagagaaatgctgtgtcgtggagtgcgatgatggccgcatattctcgagtgagcgattttagagaggtggtttgtttgtttaggcaaatgcaagaggtggggacgaggcctaatgagtctgttcttgttagtgttctcactgccgctgctcatttgggtgcggtggcgcaagggttgtgggtgcactcctatgctaagaggcacgggcttgagtcgaataggatattggccactgcattggttgatatgtactccaaatgtggctatgtggaagcagctatgaaggtttttgagggcatttgtaataaggatgccagagtgtggaatgctatgattactggggttgcgatgaatggggatgcaaggaaatcgattgagctgtttgataaaatggttgtagataagatccaacctacagaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

343

Amino Acids

38.19

Weight (kDa)

8.67

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014629)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03350
malus_domestica MD02G1033000.v1.1
prunus_persica Prupe.7G242300_v2.0.a1
pyrus_communis pycom02g01480 pycom02g02710 pycom04g20500
rosa_chinensis RchiOBHm_Chr2g0088571
rosa_laevigata RLG00000015966
rosa_multiflora Rmu_co8371145.1_g000001 Rmu_sc0004733.1_g000003
rosa_roxburghii Rroxscaffold_2G00152540
rosa_rugosa Rorug01G0485200
rosa_samantha Rh2AG040500 Rh2BG039200 Rh2CG040100 Rh2DG039500
rosa_wichuraiana Rw2G003140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 930
AccBSI CCGCTC 1 cut(s) 136
AccII CGCG 1 cut(s) 263
AciI CCGC 9 cut(s) 134, 144, 147, 211, 275, 447, 645, 753, 770
AclWI GGATC 1 cut(s) 1009
AcoI YGGCCR 2 cut(s) 642, 837
AcsI RAATTY 1 cut(s) 413
AfaI GTAC 3 cut(s) 227, 305, 860
AfiI CCNNNNNNNGG 1 cut(s) 930
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 8, 193, 301
AjuI GAANNNNNNNTTGG 2 cut(s) 818, 850
AluBI AGCT 5 cut(s) 70, 350, 379, 887, 988
AluI AGCT 5 cut(s) 70, 350, 379, 887, 988
Alw21I GWGCWC 1 cut(s) 795
Alw44I GTGCAC 1 cut(s) 791
AlwI GGATC 1 cut(s) 1009
Ama87I CYCGRG 1 cut(s) 654
AoxI GGCC 3 cut(s) 642, 716, 837
ApaLI GTGCAC 1 cut(s) 791
ApeKI GCWGC 4 cut(s) 272, 488, 755, 884
ApoI RAATTY 1 cut(s) 413
AsiGI ACCGGT 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 593
AspLEI GCGC 3 cut(s) 247, 265, 778
AspS9I GGNCC 1 cut(s) 364
AsuHPI GGTGA 2 cut(s) 197, 481
AvaI CYCGRG 1 cut(s) 654
AvaII GGWCC 1 cut(s) 364
BaeGI GKGCMC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 839
Bbv12I GWGCWC 1 cut(s) 795
BbvI GCAGC 4 cut(s) 259, 475, 742, 896
BccI CCATC 6 cut(s) 134, 210, 475, 538, 545, 634
BceAI ACGGC 1 cut(s) 555
BcgI CGANNNNNNTGC 2 cut(s) 960, 994
BclI TGATCA 2 cut(s) 237, 342
BfaI CTAG 2 cut(s) 290, 516
BfmI CTRYAG 1 cut(s) 1023
BisI GCNGC 7 cut(s) 147, 273, 489, 645, 753, 756, 885
BlsI GCNGC 7 cut(s) 148, 274, 490, 646, 754, 757, 886
Bme18I GGWCC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 654
BmgT120I GGNCC 1 cut(s) 364
BmrI ACTGGG 1 cut(s) 957
BmsI GCATC 2 cut(s) 910, 958
BmuI ACTGGG 1 cut(s) 957
BpuEI CTTGAG 3 cut(s) 56, 497, 839
Bsa29I ATCGAT 1 cut(s) 980
BsaWI WCCGGW 1 cut(s) 383
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 930
Bse118I RCCGGY 2 cut(s) 265, 383
Bse1I ACTGG 1 cut(s) 952
BseCI ATCGAT 1 cut(s) 980
BseGI GGATG 3 cut(s) 577, 925, 973
BseLI CCNNNNNNNGG 1 cut(s) 930
BseMII CTCAG 2 cut(s) 366, 600
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 3 cut(s) 29, 83, 128
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 4 cut(s) 259, 475, 742, 896
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 3 cut(s) 644, 718, 839
BshTI ACCGGT 1 cut(s) 383
BshVI ATCGAT 1 cut(s) 980
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 2 cut(s) 266, 384
BslFI GGGAC 1 cut(s) 724
BslI CCNNNNNNNGG 1 cut(s) 930
BsmFI GGGAC 1 cut(s) 724
BsmI GAATGC 2 cut(s) 586, 940
BsnI GGCC 3 cut(s) 644, 718, 839
BsoBI CYCGRG 1 cut(s) 654
Bsp1286I GDGCHC 1 cut(s) 795
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 5 cut(s) 28, 237, 312, 342, 1014
BspACI CCGC 9 cut(s) 134, 144, 147, 211, 275, 447, 645, 753, 770
BspANI GGCC 3 cut(s) 644, 718, 839
BspCNI CTCAG 2 cut(s) 367, 601
BspDI ATCGAT 1 cut(s) 980
BspFNI CGCG 1 cut(s) 263
BspPI GGATC 1 cut(s) 1009
BsrBI CCGCTC 1 cut(s) 136
BsrFI RCCGGY 2 cut(s) 265, 383
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 952
BssAI RCCGGY 2 cut(s) 265, 383
BssMI GATC 5 cut(s) 28, 237, 312, 342, 1014
Bst4CI ACNGT 1 cut(s) 16
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 181, 449
BstDEI CTNAG 3 cut(s) 375, 609, 804
BstF5I GGATG 3 cut(s) 577, 925, 973
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 3 cut(s) 247, 265, 778
BstKTI GATC 5 cut(s) 31, 240, 315, 345, 1017
BstMBI GATC 5 cut(s) 28, 237, 312, 342, 1014
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 3 cut(s) 51, 269, 641
BstSFI CTRYAG 1 cut(s) 1023
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 4 cut(s) 259, 475, 742, 896
BstX2I RGATCY 1 cut(s) 1014
BstXI CCANNNNNNTGG 1 cut(s) 847
BstYI RGATCY 1 cut(s) 1014
Bsu15I ATCGAT 1 cut(s) 980
BsuRI GGCC 3 cut(s) 644, 718, 839
BsuTUI ATCGAT 1 cut(s) 980
BtgZI GCGATG 4 cut(s) 112, 557, 650, 971
BtsCI GGATG 3 cut(s) 577, 925, 973
BtsI GCAGTG 2 cut(s) 747, 840
BtsIMutI CAGTG 2 cut(s) 747, 840
Cac8I GCNNGC 2 cut(s) 181, 449
CfoI GCGC 3 cut(s) 247, 265, 778
Cfr10I RCCGGY 2 cut(s) 265, 383
Cfr13I GGNCC 1 cut(s) 364
ClaI ATCGAT 1 cut(s) 980
CseI GACGC 1 cut(s) 167
Csp6I GTAC 3 cut(s) 226, 304, 859
CspAI ACCGGT 1 cut(s) 383
CspCI CAANNNNNGTGG 2 cut(s) 767, 802
CviAII CATG 4 cut(s) 223, 235, 398, 404
CviQI GTAC 3 cut(s) 226, 304, 859
DdeI CTNAG 3 cut(s) 375, 609, 804
DpnI GATC 5 cut(s) 30, 239, 314, 344, 1016
DpnII GATC 5 cut(s) 28, 237, 312, 342, 1014
EaeI YGGCCR 2 cut(s) 642, 837
EciI GGCGGA 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 654
FaeI CATG 4 cut(s) 226, 238, 401, 407
FaqI GGGAC 1 cut(s) 724
FatI CATG 4 cut(s) 222, 234, 397, 403
FauI CCCGC 1 cut(s) 440
FbaI TGATCA 2 cut(s) 237, 342
Fnu4HI GCNGC 7 cut(s) 147, 273, 489, 645, 753, 756, 885
FokI GGATG 3 cut(s) 584, 932, 980
Fsp4HI GCNGC 7 cut(s) 147, 273, 489, 645, 753, 756, 885
FspBI CTAG 2 cut(s) 290, 516
GlaI GCGC 3 cut(s) 246, 264, 777
GluI GCNGC 7 cut(s) 147, 273, 489, 645, 753, 756, 885
HaeIII GGCC 3 cut(s) 644, 718, 839
HapII CCGG 2 cut(s) 266, 384
HgaI GACGC 1 cut(s) 167
HhaI GCGC 3 cut(s) 247, 265, 778
Hin1II CATG 4 cut(s) 226, 238, 401, 407
Hin6I GCGC 3 cut(s) 245, 263, 776
HinP1I GCGC 3 cut(s) 245, 263, 776
HindIII AAGCTT 1 cut(s) 348
HinfI GANTC 4 cut(s) 4, 472, 725, 821
HpaII CCGG 2 cut(s) 266, 384
HphI GGTGA 2 cut(s) 197, 481
Hpy166II GTNNAC 3 cut(s) 327, 537, 793
Hpy188I TCNGA 3 cut(s) 242, 376, 425
Hpy188III TCNNGA 3 cut(s) 290, 476, 654
Hpy8I GTNNAC 3 cut(s) 327, 537, 793
HpyAV CCTTC 2 cut(s) 583, 886
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4V TGCA 6 cut(s) 54, 584, 700, 793, 845, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 269, 641
HpyF3I CTNAG 3 cut(s) 375, 609, 804
Hsp92II CATG 4 cut(s) 226, 238, 401, 407
HspAI GCGC 3 cut(s) 245, 263, 776
Ksp22I TGATCA 2 cut(s) 237, 342
Kzo9I GATC 5 cut(s) 28, 237, 312, 342, 1014
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 6 cut(s) 80, 279, 397, 621, 933, 937
Lsp1109I GCAGC 4 cut(s) 259, 475, 742, 896
LweI GCATC 2 cut(s) 910, 958
MaeI CTAG 2 cut(s) 290, 516
MalI GATC 5 cut(s) 30, 239, 314, 344, 1016
MbiI CCGCTC 1 cut(s) 136
MboI GATC 5 cut(s) 28, 237, 312, 342, 1014
MboII GAAGA 2 cut(s) 181, 574
MfeI CAATTG 1 cut(s) 494
MflI RGATCY 1 cut(s) 1014
MhlI GDGCHC 1 cut(s) 795
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 3 cut(s) 370, 413, 494
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 2 cut(s) 734, 830
Mox20I TGGCCA 1 cut(s) 839
MroXI GAANNNNTTC 1 cut(s) 593
MscI TGGCCA 1 cut(s) 839
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 4 cut(s) 221, 402, 765, 798
Msp20I TGGCCA 1 cut(s) 839
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 2 cut(s) 266, 384
MunI CAATTG 1 cut(s) 494
Mva1269I GAATGC 2 cut(s) 586, 940
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 51, 269, 641
NdeII GATC 5 cut(s) 28, 237, 312, 342, 1014
NlaIII CATG 4 cut(s) 226, 238, 401, 407
PaeR7I CTCGAG 1 cut(s) 654
PceI AGGCCT 1 cut(s) 718
PcsI WCGNNNNNNNCGW 1 cut(s) 632
PctI GAATGC 2 cut(s) 586, 940
PdmI GAANNNNTTC 1 cut(s) 593
PfeI GAWTC 2 cut(s) 4, 472
PflMI CCANNNNNTGG 1 cut(s) 930
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 7 cut(s) 148, 274, 490, 646, 754, 757, 886
PleI GAGTC 2 cut(s) 733, 829
PpsI GAGTC 2 cut(s) 733, 829
PspPI GGNCC 1 cut(s) 364
PsuI RGATCY 1 cut(s) 1014
RsaI GTAC 3 cut(s) 227, 305, 860
RsaNI GTAC 3 cut(s) 226, 304, 859
RseI CAYNNNNRTG 4 cut(s) 221, 402, 765, 798
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 7 cut(s) 147, 273, 489, 645, 753, 756, 885
Sau3AI GATC 5 cut(s) 28, 237, 312, 342, 1014
Sau96I GGNCC 1 cut(s) 364
SchI GAGTC 2 cut(s) 734, 830
SduI GDGCHC 1 cut(s) 795
SfaNI GCATC 2 cut(s) 910, 958
SfcI CTRYAG 1 cut(s) 1023
Sfr274I CTCGAG 1 cut(s) 654
SgrAI CRCCGGYG 1 cut(s) 265
SinI GGWCC 1 cut(s) 364
SlaI CTCGAG 1 cut(s) 654
SmiMI CAYNNNNRTG 4 cut(s) 221, 402, 765, 798
SmlI CTYRAG 4 cut(s) 71, 476, 654, 818
SmoI CTYRAG 4 cut(s) 71, 476, 654, 818
Sse9I AATT 3 cut(s) 370, 413, 494
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 9 cut(s) 134, 144, 147, 211, 275, 447, 645, 753, 770
SspMI CTAG 2 cut(s) 290, 516
StuI AGGCCT 1 cut(s) 718
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 6 cut(s) 356, 456, 597, 655, 824, 980
TasI AATT 3 cut(s) 370, 413, 494
TatI WGTACW 2 cut(s) 225, 858
TauI GCSGC 3 cut(s) 149, 647, 755
TfiI GAWTC 2 cut(s) 4, 472
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 754, 847
TseI GCWGC 4 cut(s) 272, 488, 755, 884
TspDTI ATGAA 5 cut(s) 211, 386, 615, 905, 974
TspGWI ACGGA 2 cut(s) 321, 601
TspRI CASTG 2 cut(s) 754, 847
Van91I CCANNNNNTGG 1 cut(s) 930
VneI GTGCAC 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 593
XspI CTAG 2 cut(s) 290, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.