Ubiquitin carboxyl-terminal hydrolase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g02230 |
| malus_domestica | MD02G1020200.v1.1 MD15G1163000.v1.1 |
| prunus_persica | Prupe.7G251600_v2.0.a1 |
| pyrus_communis | pycom15g14660 |
| rosa_chinensis | RchiOBHm_Chr2g0087351 RchiOBHm_Chr2g0087361 |
| rosa_laevigata | RLG00000015859 |
| rosa_multiflora | Rmu_co8225392.1_g000001 Rmu_co8488985.1_g000001 Rmu_sc0003367.1_g000026 Rmu_sc0006064.1_g000003 Rmu_sc0033647.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00153670 |
| rosa_rugosa | Rorug01G0474400 |
| rosa_samantha | Rh2AG028000 Rh2AG028100 Rh2BG027500 Rh2CG028300 Rh2DG028100 |
| rosa_wichuraiana | Rw2G002220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 430 |
| AatII | GACGTC | 1 cut(s) | 585 |
| Acc16I | TGCGCA | 1 cut(s) | 945 |
| AccB1I | GGYRCC | 1 cut(s) | 1480 |
| AccI | GTMKAC | 3 cut(s) | 336, 434, 1106 |
| AccIII | TCCGGA | 2 cut(s) | 275, 489 |
| AclWI | GGATC | 8 cut(s) | 170, 351, 457, 537, 867, 992, 1005, 1694 |
| AcoI | YGGCCR | 4 cut(s) | 12, 46, 78, 154 |
| AcsI | RAATTY | 3 cut(s) | 559, 1225, 1310 |
| AcuI | CTGAAG | 2 cut(s) | 638, 1401 |
| AcvI | CACGTG | 3 cut(s) | 246, 268, 633 |
| AcyI | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| AfaI | GTAC | 5 cut(s) | 473, 893, 908, 1667, 1746 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 87, 152, 197, 575, 1126, 1157, 1506, 1541 |
| AflIII | ACRYGT | 3 cut(s) | 453, 630, 632 |
| AgsI | TTSAA | 3 cut(s) | 574, 1563, 1586 |
| AhlI | ACTAGT | 1 cut(s) | 29 |
| AjiI | CACGTC | 2 cut(s) | 340, 456 |
| AjnI | CCWGG | 2 cut(s) | 75, 414 |
| AluBI | AGCT | 4 cut(s) | 161, 355, 1372, 1618 |
| AluI | AGCT | 4 cut(s) | 161, 355, 1372, 1618 |
| Alw21I | GWGCWC | 2 cut(s) | 261, 357 |
| Alw26I | GTCTC | 3 cut(s) | 137, 589, 1350 |
| Alw44I | GTGCAC | 1 cut(s) | 257 |
| AlwI | GGATC | 8 cut(s) | 170, 351, 457, 537, 867, 992, 1005, 1694 |
| Aor13HI | TCCGGA | 2 cut(s) | 275, 489 |
| AoxI | GGCC | 7 cut(s) | 12, 46, 78, 90, 154, 1089, 1627 |
| ApaLI | GTGCAC | 1 cut(s) | 257 |
| ApeKI | GCWGC | 7 cut(s) | 195, 293, 363, 404, 428, 800, 1718 |
| ApoI | RAATTY | 3 cut(s) | 559, 1225, 1310 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 380, 412, 1163, 1195 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 689 |
| AspS9I | GGNCC | 5 cut(s) | 90, 278, 376, 1270, 1784 |
| AsuC2I | CCSGG | 2 cut(s) | 89, 318 |
| AsuHPI | GGTGA | 1 cut(s) | 1345 |
| AvaII | GGWCC | 4 cut(s) | 278, 376, 1270, 1784 |
| BaeGI | GKGCMC | 1 cut(s) | 261 |
| BalI | TGGCCA | 1 cut(s) | 14 |
| BamHI | GGATCC | 1 cut(s) | 997 |
| BanI | GGYRCC | 1 cut(s) | 1480 |
| BanII | GRGCYC | 3 cut(s) | 357, 615, 1301 |
| BauI | CACGAG | 1 cut(s) | 323 |
| BbrPI | CACGTG | 3 cut(s) | 246, 268, 633 |
| Bbv12I | GWGCWC | 2 cut(s) | 261, 357 |
| BbvCI | CCTCAGC | 1 cut(s) | 695 |
| BbvI | GCAGC | 7 cut(s) | 182, 280, 350, 391, 415, 787, 1730 |
| BccI | CCATC | 4 cut(s) | 4, 173, 965, 1508 |
| BceAI | ACGGC | 6 cut(s) | 61, 115, 317, 486, 661, 1222 |
| BciT130I | CCWGG | 2 cut(s) | 77, 416 |
| BciVI | GTATCC | 1 cut(s) | 516 |
| BcnI | CCSGG | 2 cut(s) | 89, 318 |
| BcoDI | GTCTC | 3 cut(s) | 137, 589, 1350 |
| BcuI | ACTAGT | 1 cut(s) | 29 |
| BfaI | CTAG | 3 cut(s) | 30, 1472, 1619 |
| BfmI | CTRYAG | 3 cut(s) | 370, 405, 871 |
| BfoI | RGCGCY | 1 cut(s) | 204 |
| BfuI | GTATCC | 1 cut(s) | 516 |
| Bme1390I | CCNGG | 4 cut(s) | 77, 89, 318, 416 |
| Bme18I | GGWCC | 4 cut(s) | 278, 376, 1270, 1784 |
| BmgBI | CACGTC | 2 cut(s) | 340, 456 |
| BmgT120I | GGNCC | 5 cut(s) | 90, 278, 376, 1270, 1784 |
| BmiI | GGNNCC | 7 cut(s) | 103, 280, 377, 999, 1149, 1482, 1785 |
| BmrFI | CCNGG | 4 cut(s) | 77, 89, 318, 416 |
| BmsI | GCATC | 7 cut(s) | 249, 300, 931, 1253, 1546, 1612, 1669 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 339, 371 |
| Bpu10I | CCTNAGC | 1 cut(s) | 695 |
| BpuEI | CTTGAG | 2 cut(s) | 1334, 1525 |
| BpuMI | CCSGG | 2 cut(s) | 89, 318 |
| Bsa29I | ATCGAT | 1 cut(s) | 507 |
| BsaAI | YACGTR | 3 cut(s) | 246, 268, 633 |
| BsaBI | GATNNNNATC | 1 cut(s) | 996 |
| BsaHI | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| BsaJI | CCNNGG | 8 cut(s) | 180, 224, 447, 518, 596, 1001, 1018, 1156 |
| BsaWI | WCCGGW | 3 cut(s) | 275, 489, 526 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 87, 152, 197, 575, 1126, 1157, 1506, 1541 |
| Bse1I | ACTGG | 2 cut(s) | 750, 1143 |
| Bse3DI | GCAATG | 3 cut(s) | 659, 742, 1030 |
| Bse8I | GATNNNNATC | 1 cut(s) | 996 |
| BseAI | TCCGGA | 2 cut(s) | 275, 489 |
| BseBI | CCWGG | 2 cut(s) | 77, 416 |
| BseCI | ATCGAT | 1 cut(s) | 507 |
| BseDI | CCNNGG | 8 cut(s) | 180, 224, 447, 518, 596, 1001, 1018, 1156 |
| BseGI | GGATG | 3 cut(s) | 165, 946, 1268 |
| BseJI | GATNNNNATC | 1 cut(s) | 996 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 87, 152, 197, 575, 1126, 1157, 1506, 1541 |
| BseMI | GCAATG | 3 cut(s) | 659, 742, 1030 |
| BseMII | CTCAG | 6 cut(s) | 434, 524, 709, 1002, 1278, 1590 |
| BseNI | ACTGG | 2 cut(s) | 750, 1143 |
| BsePI | GCGCGC | 1 cut(s) | 803 |
| BseRI | GAGGAG | 2 cut(s) | 436, 1522 |
| BseSI | GKGCMC | 1 cut(s) | 261 |
| BseXI | GCAGC | 7 cut(s) | 182, 280, 350, 391, 415, 787, 1730 |
| Bsh1285I | CGRYCG | 1 cut(s) | 703 |
| BshFI | GGCC | 7 cut(s) | 14, 48, 80, 92, 156, 1091, 1629 |
| BshNI | GGYRCC | 1 cut(s) | 1480 |
| BshVI | ATCGAT | 1 cut(s) | 507 |
| BsiEI | CGRYCG | 1 cut(s) | 703 |
| BsiHKAI | GWGCWC | 2 cut(s) | 261, 357 |
| BsiSI | CCGG | 6 cut(s) | 88, 276, 317, 479, 490, 527 |
| BslFI | GGGAC | 2 cut(s) | 54, 389 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 87, 152, 197, 575, 1126, 1157, 1506, 1541 |
| BsmAI | GTCTC | 3 cut(s) | 137, 589, 1350 |
| BsmBI | CGTCTC | 1 cut(s) | 589 |
| BsmFI | GGGAC | 2 cut(s) | 54, 389 |
| BsmI | GAATGC | 2 cut(s) | 836, 1411 |
| BsnI | GGCC | 7 cut(s) | 14, 48, 80, 92, 156, 1091, 1629 |
| Bsp1286I | GDGCHC | 4 cut(s) | 261, 357, 615, 1301 |
| Bsp13I | TCCGGA | 2 cut(s) | 275, 489 |
| Bsp1407I | TGTACA | 2 cut(s) | 891, 1744 |
| Bsp19I | CCATGG | 1 cut(s) | 518 |
| BspANI | GGCC | 7 cut(s) | 14, 48, 80, 92, 156, 1091, 1629 |
| BspCNI | CTCAG | 6 cut(s) | 433, 525, 708, 1003, 1279, 1589 |
| BspDI | ATCGAT | 1 cut(s) | 507 |
| BspEI | TCCGGA | 2 cut(s) | 275, 489 |
| BspHI | TCATGA | 1 cut(s) | 979 |
| BspLI | GGNNCC | 7 cut(s) | 103, 280, 377, 999, 1149, 1482, 1785 |
| BspMAI | CTGCAG | 2 cut(s) | 374, 409 |
| BspPI | GGATC | 8 cut(s) | 170, 351, 457, 537, 867, 992, 1005, 1694 |
| BspQI | GCTCTTC | 2 cut(s) | 362, 725 |
| BspT107I | GGYRCC | 1 cut(s) | 1480 |
| BsrDI | GCAATG | 3 cut(s) | 659, 742, 1030 |
| BsrGI | TGTACA | 2 cut(s) | 891, 1744 |
| BsrI | ACTGG | 2 cut(s) | 750, 1143 |
| BssECI | CCNNGG | 8 cut(s) | 180, 224, 447, 518, 596, 1001, 1018, 1156 |
| BssHII | GCGCGC | 1 cut(s) | 803 |
| BssNI | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| BssSI | CACGAG | 1 cut(s) | 323 |
| BssT1I | CCWWGG | 5 cut(s) | 180, 518, 596, 1018, 1156 |
| Bst2BI | CACGAG | 1 cut(s) | 323 |
| Bst2UI | CCWGG | 2 cut(s) | 77, 416 |
| Bst4CI | ACNGT | 6 cut(s) | 131, 263, 471, 896, 1241, 1274 |
| Bst6I | CTCTTC | 2 cut(s) | 362, 725 |
| BstACI | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 246 |
| BstAUI | TGTACA | 2 cut(s) | 891, 1744 |
| BstBAI | YACGTR | 3 cut(s) | 246, 268, 633 |
| BstDEI | CTNAG | 6 cut(s) | 420, 533, 695, 1011, 1287, 1576 |
| BstDSI | CCRYGG | 2 cut(s) | 518, 1001 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1155 |
| BstF5I | GGATG | 3 cut(s) | 165, 946, 1268 |
| BstH2I | RGCGCY | 1 cut(s) | 204 |
| BstMAI | GTCTC | 3 cut(s) | 137, 589, 1350 |
| BstMCI | CGRYCG | 1 cut(s) | 703 |
| BstNI | CCWGG | 2 cut(s) | 77, 416 |
| BstNSI | RCATGY | 1 cut(s) | 811 |
| BstSCI | CCNGG | 4 cut(s) | 75, 87, 316, 414 |
| BstSFI | CTRYAG | 3 cut(s) | 370, 405, 871 |
| BstSLI | GKGCMC | 1 cut(s) | 261 |
| BstV1I | GCAGC | 7 cut(s) | 182, 280, 350, 391, 415, 787, 1730 |
| BstX2I | RGATCY | 2 cut(s) | 529, 997 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1025, 1241 |
| BstYI | RGATCY | 2 cut(s) | 529, 997 |
| Bsu15I | ATCGAT | 1 cut(s) | 507 |
| BsuI | GTATCC | 1 cut(s) | 516 |
| BsuRI | GGCC | 7 cut(s) | 14, 48, 80, 92, 156, 1091, 1629 |
| BsuTUI | ATCGAT | 1 cut(s) | 507 |
| BtgI | CCRYGG | 2 cut(s) | 518, 1001 |
| BtrI | CACGTC | 2 cut(s) | 340, 456 |
| BtsCI | GGATG | 3 cut(s) | 165, 946, 1268 |
| BtsI | GCAGTG | 1 cut(s) | 1331 |
| BtsIMutI | CAGTG | 5 cut(s) | 259, 1136, 1331, 1425, 1667 |
| CciI | TCATGA | 1 cut(s) | 979 |
| Cfr13I | GGNCC | 5 cut(s) | 90, 278, 376, 1270, 1784 |
| Cfr42I | CCGCGG | 1 cut(s) | 1004 |
| ClaI | ATCGAT | 1 cut(s) | 507 |
| CseI | GACGC | 6 cut(s) | 209, 410, 420, 507, 839, 874 |
| Csp6I | GTAC | 5 cut(s) | 472, 892, 907, 1666, 1745 |
| CviQI | GTAC | 5 cut(s) | 472, 892, 907, 1666, 1745 |
| DdeI | CTNAG | 6 cut(s) | 420, 533, 695, 1011, 1287, 1576 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 430 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 430 |
| EaeI | YGGCCR | 4 cut(s) | 12, 46, 78, 154 |
| Eam1104I | CTCTTC | 2 cut(s) | 362, 725 |
| EarI | CTCTTC | 2 cut(s) | 362, 725 |
| EciI | GGCGGA | 1 cut(s) | 158 |
| Ecl136II | GAGCTC | 1 cut(s) | 355 |
| Eco130I | CCWWGG | 5 cut(s) | 180, 518, 596, 1018, 1156 |
| Eco24I | GRGCYC | 3 cut(s) | 357, 615, 1301 |
| Eco47I | GGWCC | 4 cut(s) | 278, 376, 1270, 1784 |
| Eco53kI | GAGCTC | 1 cut(s) | 355 |
| Eco57I | CTGAAG | 2 cut(s) | 638, 1401 |
| Eco72I | CACGTG | 3 cut(s) | 246, 268, 633 |
| EcoICRI | GAGCTC | 1 cut(s) | 355 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1784 |
| EcoRI | GAATTC | 2 cut(s) | 559, 1225 |
| EcoRII | CCWGG | 2 cut(s) | 75, 414 |
| EcoT14I | CCWWGG | 5 cut(s) | 180, 518, 596, 1018, 1156 |
| EcoT38I | GRGCYC | 3 cut(s) | 357, 615, 1301 |
| ErhI | CCWWGG | 5 cut(s) | 180, 518, 596, 1018, 1156 |
| Esp3I | CGTCTC | 1 cut(s) | 589 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1183, 1215 |
| FaqI | GGGAC | 2 cut(s) | 54, 389 |
| FauI | CCCGC | 2 cut(s) | 602, 779 |
| FauNDI | CATATG | 1 cut(s) | 1114 |
| FblI | GTMKAC | 3 cut(s) | 336, 434, 1106 |
| FokI | GGATG | 3 cut(s) | 152, 953, 1275 |
| FriOI | GRGCYC | 3 cut(s) | 357, 615, 1301 |
| FspAI | RTGCGCAY | 1 cut(s) | 945 |
| FspBI | CTAG | 3 cut(s) | 30, 1472, 1619 |
| FspI | TGCGCA | 1 cut(s) | 945 |
| HaeII | RGCGCY | 1 cut(s) | 204 |
| HaeIII | GGCC | 7 cut(s) | 14, 48, 80, 92, 156, 1091, 1629 |
| HapII | CCGG | 6 cut(s) | 88, 276, 317, 479, 490, 527 |
| HgaI | GACGC | 6 cut(s) | 209, 410, 420, 507, 839, 874 |
| Hin1I | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| HincII | GTYRAC | 4 cut(s) | 35, 337, 435, 1444 |
| HindII | GTYRAC | 4 cut(s) | 35, 337, 435, 1444 |
| HindIII | AAGCTT | 1 cut(s) | 1370 |
| HinfI | GANTC | 7 cut(s) | 138, 212, 484, 565, 916, 976, 1343 |
| HpaII | CCGG | 6 cut(s) | 88, 276, 317, 479, 490, 527 |
| HphI | GGTGA | 1 cut(s) | 1345 |
| Hpy166II | GTNNAC | 8 cut(s) | 35, 259, 337, 435, 1107, 1129, 1182, 1444 |
| Hpy188III | TCNNGA | 5 cut(s) | 276, 323, 490, 980, 1504 |
| Hpy8I | GTNNAC | 8 cut(s) | 35, 259, 337, 435, 1107, 1129, 1182, 1444 |
| Hpy99I | CGWCG | 8 cut(s) | 10, 338, 341, 404, 436, 501, 584, 1679 |
| HpyAV | CCTTC | 4 cut(s) | 121, 282, 979, 1432 |
| HpyCH4III | ACNGT | 6 cut(s) | 131, 263, 471, 896, 1241, 1274 |
| HpyCH4IV | ACGT | 7 cut(s) | 245, 267, 339, 455, 582, 632, 1103 |
| HpyF3I | CTNAG | 6 cut(s) | 420, 533, 695, 1011, 1287, 1576 |
| HpySE526I | ACGT | 7 cut(s) | 245, 267, 339, 455, 582, 632, 1103 |
| Hsp92I | GRCGYC | 4 cut(s) | 499, 582, 831, 866 |
| Kpn2I | TCCGGA | 2 cut(s) | 275, 489 |
| KspI | CCGCGG | 1 cut(s) | 1004 |
| LguI | GCTCTTC | 2 cut(s) | 362, 725 |
| LmnI | GCTCC | 2 cut(s) | 107, 669 |
| Lsp1109I | GCAGC | 7 cut(s) | 182, 280, 350, 391, 415, 787, 1730 |
| LweI | GCATC | 7 cut(s) | 249, 300, 931, 1253, 1546, 1612, 1669 |
| MaeI | CTAG | 3 cut(s) | 30, 1472, 1619 |
| MaeII | ACGT | 7 cut(s) | 245, 267, 339, 455, 582, 632, 1103 |
| MaeIII | GTNAC | 5 cut(s) | 186, 263, 320, 1600, 1636 |
| MboII | GAAGA | 9 cut(s) | 349, 568, 644, 739, 742, 946, 1407, 1438, 1488 |
| MflI | RGATCY | 2 cut(s) | 529, 997 |
| MhlI | GDGCHC | 4 cut(s) | 261, 357, 615, 1301 |
| MlsI | TGGCCA | 1 cut(s) | 14 |
| MluCI | AATT | 6 cut(s) | 559, 619, 1225, 1310, 1568, 1586 |
| MluNI | TGGCCA | 1 cut(s) | 14 |
| MlyI | GAGTC | 4 cut(s) | 147, 221, 574, 1352 |
| MmeI | TCCRAC | 1 cut(s) | 490 |
| Mox20I | TGGCCA | 1 cut(s) | 14 |
| MroI | TCCGGA | 2 cut(s) | 275, 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 689 |
| MscI | TGGCCA | 1 cut(s) | 14 |
| MseI | TTAA | 2 cut(s) | 1652, 1698 |
| MslI | CAYNNNNRTG | 1 cut(s) | 962 |
| Msp20I | TGGCCA | 1 cut(s) | 14 |
| MspA1I | CMGCKG | 3 cut(s) | 254, 428, 1003 |
| MspI | CCGG | 6 cut(s) | 88, 276, 317, 479, 490, 527 |
| MspR9I | CCNGG | 4 cut(s) | 77, 89, 318, 416 |
| Mva1269I | GAATGC | 2 cut(s) | 836, 1411 |
| MvaI | CCWGG | 2 cut(s) | 77, 416 |
| NciI | CCSGG | 2 cut(s) | 89, 318 |
| NcoI | CCATGG | 1 cut(s) | 518 |
| NdeI | CATATG | 1 cut(s) | 1114 |
| NlaIV | GGNNCC | 7 cut(s) | 103, 280, 377, 999, 1149, 1482, 1785 |
| NmeAIII | GCCGAG | 5 cut(s) | 106, 174, 182, 376, 821 |
| NmuCI | GTSAC | 3 cut(s) | 263, 320, 1600 |
| NsbI | TGCGCA | 1 cut(s) | 945 |
| NspI | RCATGY | 1 cut(s) | 811 |
| PagI | TCATGA | 1 cut(s) | 979 |
| PauI | GCGCGC | 1 cut(s) | 803 |
| PciSI | GCTCTTC | 2 cut(s) | 362, 725 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 330, 336 |
| PctI | GAATGC | 2 cut(s) | 836, 1411 |
| PdmI | GAANNNNTTC | 1 cut(s) | 689 |
| PfeI | GAWTC | 3 cut(s) | 484, 916, 976 |
| PflFI | GACNNNGTC | 2 cut(s) | 380, 1177 |
| Ple19I | CGATCG | 1 cut(s) | 703 |
| PleI | GAGTC | 4 cut(s) | 146, 220, 573, 1351 |
| PmaCI | CACGTG | 3 cut(s) | 246, 268, 633 |
| PmlI | CACGTG | 3 cut(s) | 246, 268, 633 |
| PpsI | GAGTC | 4 cut(s) | 146, 220, 573, 1351 |
| Ppu21I | YACGTR | 3 cut(s) | 246, 268, 633 |
| PpuMI | RGGWCCY | 1 cut(s) | 1784 |
| Psp124BI | GAGCTC | 1 cut(s) | 357 |
| Psp5II | RGGWCCY | 1 cut(s) | 1784 |
| Psp6I | CCWGG | 2 cut(s) | 75, 414 |
| PspCI | CACGTG | 3 cut(s) | 246, 268, 633 |
| PspGI | CCWGG | 2 cut(s) | 75, 414 |
| PspN4I | GGNNCC | 7 cut(s) | 103, 280, 377, 999, 1149, 1482, 1785 |
| PspPI | GGNCC | 5 cut(s) | 90, 278, 376, 1270, 1784 |
| PspPPI | RGGWCCY | 1 cut(s) | 1784 |
| PstI | CTGCAG | 2 cut(s) | 374, 409 |
| PsuI | RGATCY | 2 cut(s) | 529, 997 |
| PsyI | GACNNNGTC | 2 cut(s) | 380, 1177 |
| PteI | GCGCGC | 1 cut(s) | 803 |
| PvuI | CGATCG | 1 cut(s) | 703 |
| RsaI | GTAC | 5 cut(s) | 473, 893, 908, 1667, 1746 |
| RsaNI | GTAC | 5 cut(s) | 472, 892, 907, 1666, 1745 |
| RseI | CAYNNNNRTG | 1 cut(s) | 962 |
| SacI | GAGCTC | 1 cut(s) | 357 |
| SacII | CCGCGG | 1 cut(s) | 1004 |
| SalI | GTCGAC | 2 cut(s) | 335, 433 |
| SapI | GCTCTTC | 2 cut(s) | 362, 725 |
| SaqAI | TTAA | 2 cut(s) | 1652, 1698 |
| Sau96I | GGNCC | 5 cut(s) | 90, 278, 376, 1270, 1784 |
| SbfI | CCTGCAGG | 1 cut(s) | 374 |
| SchI | GAGTC | 4 cut(s) | 147, 221, 574, 1352 |
| ScrFI | CCNGG | 4 cut(s) | 77, 89, 318, 416 |
| SdaI | CCTGCAGG | 1 cut(s) | 374 |
| SduI | GDGCHC | 4 cut(s) | 261, 357, 615, 1301 |
| SfaNI | GCATC | 7 cut(s) | 249, 300, 931, 1253, 1546, 1612, 1669 |
| SfcI | CTRYAG | 3 cut(s) | 370, 405, 871 |
| Sfr303I | CCGCGG | 1 cut(s) | 1004 |
| SgrBI | CCGCGG | 1 cut(s) | 1004 |
| SgrDI | CGTCGACG | 1 cut(s) | 335 |
| SinI | GGWCC | 4 cut(s) | 278, 376, 1270, 1784 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 962 |
| SmlI | CTYRAG | 2 cut(s) | 1349, 1504 |
| SmoI | CTYRAG | 2 cut(s) | 1349, 1504 |
| SpeI | ACTAGT | 1 cut(s) | 29 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 374 |
| Sse9I | AATT | 6 cut(s) | 559, 619, 1225, 1310, 1568, 1586 |
| SspI | AATATT | 1 cut(s) | 1708 |
| SspMI | CTAG | 3 cut(s) | 30, 1472, 1619 |
| SstI | GAGCTC | 1 cut(s) | 357 |
| StyD4I | CCNGG | 4 cut(s) | 75, 87, 316, 414 |
| StyI | CCWWGG | 5 cut(s) | 180, 518, 596, 1018, 1156 |
| TaaI | ACNGT | 6 cut(s) | 131, 263, 471, 896, 1241, 1274 |
| TaiI | ACGT | 7 cut(s) | 248, 270, 342, 458, 585, 635, 1106 |
| TaqI | TCGA | 7 cut(s) | 8, 336, 346, 399, 434, 507, 563 |
| TasI | AATT | 6 cut(s) | 559, 619, 1225, 1310, 1568, 1586 |
| TatI | WGTACW | 2 cut(s) | 891, 1744 |
| TfiI | GAWTC | 3 cut(s) | 484, 916, 976 |
| Tru1I | TTAA | 2 cut(s) | 1652, 1698 |
| Tru9I | TTAA | 2 cut(s) | 1652, 1698 |
| TscAI | CASTG | 5 cut(s) | 266, 1143, 1331, 1425, 1667 |
| TseFI | GTSAC | 3 cut(s) | 263, 320, 1600 |
| TseI | GCWGC | 7 cut(s) | 195, 293, 363, 404, 428, 800, 1718 |
| Tsp45I | GTSAC | 3 cut(s) | 263, 320, 1600 |
| TspDTI | ATGAA | 6 cut(s) | 656, 792, 945, 946, 968, 1238 |
| TspGWI | ACGGA | 1 cut(s) | 558 |
| TspRI | CASTG | 5 cut(s) | 266, 1143, 1331, 1425, 1667 |
| Tth111I | GACNNNGTC | 2 cut(s) | 380, 1177 |
| VneI | GTGCAC | 1 cut(s) | 257 |
| VpaK11BI | GGWCC | 4 cut(s) | 278, 376, 1270, 1784 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1155 |
| XapI | RAATTY | 3 cut(s) | 559, 1225, 1310 |
| XceI | RCATGY | 1 cut(s) | 811 |
| XmiI | GTMKAC | 3 cut(s) | 336, 434, 1106 |
| XmnI | GAANNNNTTC | 1 cut(s) | 689 |
| XspI | CTAG | 3 cut(s) | 30, 1472, 1619 |
| ZraI | GACGTC | 1 cut(s) | 583 |