Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0009945

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG028300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1746 bp

ATGTCGTCGATGACCAAGATCAACGGCCACGCTCTACCCCAGCCCTGCTCCCACCTCGCCGCCTTCCGATCCAAAAACGGCTCCAAACCCTTCCGCGCCTTACAGGACTGCCTCCGCGTCAAGCCCCCCGGCGGCCGCGCCTCGATCCGCCGCGATCCCCACGAGCTCCCCCGATGCGCCGCCTGCGGCGAGTCAGCTCACTCGCGGCTCTACGCCTGCGTCACCTGCGCCGCGGTTCACTGCCACGCTCCCTCCGGCGGACTCTCCCACGCGGCGGCTCACGCCGAGTCGCTGCCTCCGGGGCACGAGATCGCCGTCGACGTCGACCGGGCCGAGCTCTTCTGCTGCGCGTGCAGGGATCAAGTCTACGACCGCGACTTCGACGCCGCCGTGGTCCTGGCTCAGACGGCCTCGCCCACCACCGCCGCCTCCTCCGCGATCCAGCAGTACGCGCCGGAGAATCTCCGGAAACGGCGTCGGATCGATTACAAGCCGTGGTCGCCGGATTTGAGTGAGCAGGTGATCGTCGGAAAAAACTCGAGCCTCCTACACGGCCGGACTCCCTCCGCTTTGCCTTGGGGACTGCGCGGGCTCAACAATTTGGGGAACACGTGCTTCATGAACTCCGTTCTTCAGGCATTGCTCCACACGCCGCCGTTGCGGAACTACTTCCTCAGCGATCGGCACAACCGCTACTTTTGCCAGAAGAAGAGCAATGCTGATAAGAAAAGCGCGGGTAATAGTGGCGGGAACACGGCGGCCGGGTCTGTGTGCTTGGCCTGTGACATGGACGCCACGTTTTCGGCGGTTTTCTCAGGCGATCGGAAGCCTTATAGCCCAGCCAAGTTCTTGTACAGTTGGTGGCAATACGCTGCAAATTTGGCGAGCTATGAGCAGCAGGATGCGCATGAATTCTTCATTTCGATGCTGGATGGGATTCATGAGAAGGTGGAAAAGGAAGGGAGGAAACCCGGGAGCCAAGGCACTGGAGATTGTTGTGTGGCTCATAGAGTTTTTTCTGGCATCTTGCGATCTGATGTTATGTGTATGGCTTGTGGTTTTACGTCTACAACATATGATCCATGCGTAGACATCTCACTGGATTTGGAACCAGGTTCTGCAAAGACGATGTCCACAAAGTCGAATCATTCTTGCAATGGCAATGCAGATTGCATGAATTCTGGCCAAAACTGTGGCACATCTACCCTTTTGGGATGCCTGGACCGTTTTACAAGACCTGAGAGATTGGGCTCTGACCAGAAATTTTTTTGCCAGCAGTGTCAGGTGAGACAAGAGTCTCTCAAGCAAATGTCCATTAGGAAGCTTCCTTTAGTTTCTTGCTTCCATATCAAACGATTTGAGCATTCTTCAATACGAAAGATGTCAAGGAAGGTGGATCGTTATCTGCAGTTTCCATTTTCGTTGGACATGGCACCATATCTTTCGTCTTCCATCTTAAGGAATCGGTTTGGGAATAGGATTCTTCCTTTTGATGGGGATGAGCCAGAAGCTCCGAATGAGTTATGCTCAGAATTTGAGTTGTTTGCTGTCGTAACTCACACAGGCAAGCTGGATGCTGGCCATTACGTGACTTACTTGCGATTAAGTAATCATTGGTACAAGTGTGATGATGCTTGGATCACACAAGTTAACGAGGACATTGTGAGGGCTGCACAAGGCTACATGATGTTTTATGTACAGAAAATGCTATTGTACAAAGCAAGTGAGAAACAGGGTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

581

Amino Acids

64.46

Weight (kDa)

8.61

Isoelectric Point (pI)

48.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	59 - 126	8e-10	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	196 - 565	8.2e-59	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	197 - 544	1.7e-16	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02230
malus_domestica	MD02G1020200.v1.1 MD15G1163000.v1.1
prunus_persica	Prupe.7G251600_v2.0.a1
pyrus_communis	pycom15g14660
rosa_chinensis	RchiOBHm_Chr2g0087351 RchiOBHm_Chr2g0087361
rosa_laevigata	RLG00000015859
rosa_multiflora	Rmu_co8225392.1_g000001 Rmu_co8488985.1_g000001 Rmu_sc0003367.1_g000026 Rmu_sc0006064.1_g000003 Rmu_sc0033647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153670
rosa_rugosa	Rorug01G0474400
rosa_samantha	Rh2AG028000 Rh2AG028100 Rh2BG027500 Rh2CG028300 Rh2DG028100
rosa_wichuraiana	Rw2G002220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	233, 508
AatII	GACGTC	1 cut(s)	324
Acc16I	TGCGCA	1 cut(s)	906
Acc36I	ACCTGC	2 cut(s)	233, 508
AccB1I	GGYRCC	1 cut(s)	1432
AccI	GTMKAC	5 cut(s)	318, 324, 366, 1067, 1089
AccIII	TCCGGA	1 cut(s)	465
AclWI	GGATC	9 cut(s)	63, 139, 149, 366, 433, 488, 1073, 1404, 1646
AcoI	YGGCCR	6 cut(s)	25, 133, 553, 759, 1183, 1579
AcsI	RAATTY	5 cut(s)	877, 911, 1177, 1262, 1532
AcuI	CTGAAG	1 cut(s)	617
AcvI	CACGTG	1 cut(s)	612
AcyI	GRCGYC	4 cut(s)	321, 384, 475, 792
AfaI	GTAC	5 cut(s)	449, 854, 1619, 1698, 1715
AfiI	CCNNNNNNNGG	5 cut(s)	131, 257, 274, 1458, 1493
AflII	CTTAAG	1 cut(s)	1456
AflIII	ACRYGT	1 cut(s)	609
AgsI	TTSAA	1 cut(s)	1371
AjnI	CCWGG	3 cut(s)	396, 1111, 1218
AluBI	AGCT	7 cut(s)	166, 197, 337, 888, 1324, 1511, 1570
AluI	AGCT	7 cut(s)	166, 197, 337, 888, 1324, 1511, 1570
Alw21I	GWGCWC	2 cut(s)	168, 339
Alw26I	GTCTC	2 cut(s)	1282, 1302
AlwI	GGATC	9 cut(s)	63, 139, 149, 366, 433, 488, 1073, 1404, 1646
AlwNI	CAGNNNCTG	1 cut(s)	1118
Ama87I	CYCGRG	2 cut(s)	538, 971
Aor13HI	TCCGGA	1 cut(s)	465
AoxI	GGCC	9 cut(s)	25, 133, 330, 408, 553, 759, 777, 1183, 1579
ApeKI	GCWGC	5 cut(s)	292, 345, 872, 895, 1670
ApoI	RAATTY	5 cut(s)	877, 911, 1177, 1262, 1532
ArsI	GACNNNNNNTTYG	4 cut(s)	362, 394, 1115, 1147
Asp700I	GAANNNNTTC	1 cut(s)	668
AspLEI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 454, 588, 734, 907
AspS9I	GGNCC	3 cut(s)	330, 394, 1222
AsuC2I	CCSGG	6 cut(s)	129, 300, 329, 763, 972, 973
AsuHPI	GGTGA	3 cut(s)	214, 532, 1297
AvaI	CYCGRG	2 cut(s)	538, 971
AvaII	GGWCC	2 cut(s)	394, 1222
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	1609, 1642
BalI	TGGCCA	2 cut(s)	1185, 1581
BanI	GGYRCC	1 cut(s)	1432
BanII	GRGCYC	4 cut(s)	168, 339, 594, 1253
BauI	CACGAG	2 cut(s)	161, 305
BbrPI	CACGTG	1 cut(s)	612
BbsI	GAAGAC	1 cut(s)	1440
Bbv12I	GWGCWC	2 cut(s)	168, 339
BbvCI	CCTCAGC	1 cut(s)	674
BbvI	GCAGC	5 cut(s)	279, 332, 859, 907, 1657
BccI	CCATC	3 cut(s)	926, 1460, 1487
BciT130I	CCWGG	3 cut(s)	398, 1113, 1220
BcnI	CCSGG	6 cut(s)	129, 300, 329, 763, 972, 973
BcoDI	GTCTC	2 cut(s)	1282, 1302
BfmI	CTRYAG	1 cut(s)	1406
BfrI	CTTAAG	1 cut(s)	1456
BfuAI	ACCTGC	2 cut(s)	233, 508
BglI	GCCNNNNNGGC	1 cut(s)	301
Bme1390I	CCNGG	9 cut(s)	129, 300, 329, 398, 763, 972, 973, 1113, 1220
Bme18I	GGWCC	2 cut(s)	394, 1222
BmeT110I	CYCGRG	2 cut(s)	538, 971
BmgT120I	GGNCC	3 cut(s)	330, 394, 1222
BmiI	GGNNCC	4 cut(s)	82, 977, 1110, 1434
BmrFI	CCNGG	9 cut(s)	129, 300, 329, 398, 763, 972, 973, 1113, 1220
BmsI	GCATC	7 cut(s)	164, 892, 915, 1032, 1205, 1564, 1621
BoxI	GACNNNNGTC	1 cut(s)	1294
BpiI	GAAGAC	1 cut(s)	1440
BplI	GAGNNNNNCTC	2 cut(s)	1511, 1543
BpmI	CTGGAG	1 cut(s)	1008
Bpu10I	CCTNAGC	1 cut(s)	674
BpuEI	CTTGAG	1 cut(s)	1286
BpuMI	CCSGG	6 cut(s)	129, 300, 329, 763, 972, 973
Bsa29I	ATCGAT	1 cut(s)	483
BsaAI	YACGTR	2 cut(s)	612, 1588
BsaBI	GATNNNNATC	1 cut(s)	1401
BsaHI	GRCGYC	4 cut(s)	321, 384, 475, 792
BsaJI	CCNNGG	8 cut(s)	127, 231, 299, 390, 494, 575, 971, 979
BsaWI	WCCGGW	1 cut(s)	465
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 257, 274, 1458, 1493
Bse1I	ACTGG	2 cut(s)	991, 1104
Bse3DI	GCAATG	4 cut(s)	638, 721, 1162, 1168
Bse8I	GATNNNNATC	1 cut(s)	1401
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	398, 1113, 1220
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	8 cut(s)	127, 231, 299, 390, 494, 575, 971, 979
BseGI	GGATG	5 cut(s)	907, 937, 1220, 1504, 1579
BseJI	GATNNNNATC	1 cut(s)	1401
BseLI	CCNNNNNNNGG	5 cut(s)	131, 257, 274, 1458, 1493
BseMI	GCAATG	4 cut(s)	638, 721, 1162, 1168
BseMII	CTCAG	5 cut(s)	416, 688, 828, 1230, 1542
BseNI	ACTGG	2 cut(s)	991, 1104
BseRI	GAGGAG	1 cut(s)	421
BseSI	GKGCMC	1 cut(s)	306
BseX3I	CGGCCG	3 cut(s)	133, 553, 759
BseXI	GCAGC	5 cut(s)	279, 332, 859, 907, 1657
BseYI	CCCAGC	2 cut(s)	39, 838
BsgI	GTGCAG	2 cut(s)	373, 1656
Bsh1285I	CGRYCG	7 cut(s)	136, 328, 373, 556, 682, 762, 823
BshFI	GGCC	9 cut(s)	27, 135, 332, 410, 555, 761, 779, 1185, 1581
BshNI	GGYRCC	1 cut(s)	1432
BshVI	ATCGAT	1 cut(s)	483
BsiEI	CGRYCG	7 cut(s)	136, 328, 373, 556, 682, 762, 823
BsiHKAI	GWGCWC	2 cut(s)	168, 339
BsiHKCI	CYCGRG	2 cut(s)	538, 971
BslFI	GGGAC	1 cut(s)	594
BslI	CCNNNNNNNGG	5 cut(s)	131, 257, 274, 1458, 1493
BsmAI	GTCTC	2 cut(s)	1282, 1302
BsmFI	GGGAC	1 cut(s)	594
BsmI	GAATGC	1 cut(s)	1363
BsnI	GGCC	9 cut(s)	27, 135, 332, 410, 555, 761, 779, 1185, 1581
BsoBI	CYCGRG	2 cut(s)	538, 971
Bsp1286I	GDGCHC	5 cut(s)	168, 306, 339, 594, 1253
Bsp13I	TCCGGA	1 cut(s)	465
Bsp1407I	TGTACA	3 cut(s)	852, 1696, 1713
BspANI	GGCC	9 cut(s)	27, 135, 332, 410, 555, 761, 779, 1185, 1581
BspCNI	CTCAG	5 cut(s)	415, 687, 827, 1231, 1541
BspDI	ATCGAT	1 cut(s)	483
BspEI	TCCGGA	1 cut(s)	465
BspHI	TCATGA	2 cut(s)	618, 940
BspLI	GGNNCC	4 cut(s)	82, 977, 1110, 1434
BspMAI	CTGCAG	1 cut(s)	1410
BspMI	ACCTGC	2 cut(s)	233, 508
BspPI	GGATC	9 cut(s)	63, 139, 149, 366, 433, 488, 1073, 1404, 1646
BspQI	GCTCTTC	2 cut(s)	344, 704
BspT107I	GGYRCC	1 cut(s)	1432
BspTI	CTTAAG	1 cut(s)	1456
BsrDI	GCAATG	4 cut(s)	638, 721, 1162, 1168
BsrGI	TGTACA	3 cut(s)	852, 1696, 1713
BsrI	ACTGG	2 cut(s)	991, 1104
BssECI	CCNNGG	8 cut(s)	127, 231, 299, 390, 494, 575, 971, 979
BssNI	GRCGYC	4 cut(s)	321, 384, 475, 792
BssSI	CACGAG	2 cut(s)	161, 305
BssT1I	CCWWGG	2 cut(s)	575, 979
Bst2BI	CACGAG	2 cut(s)	161, 305
Bst2UI	CCWGG	3 cut(s)	398, 1113, 1220
Bst4CI	ACNGT	3 cut(s)	857, 1193, 1226
Bst6I	CTCTTC	2 cut(s)	344, 704
BstACI	GRCGYC	4 cut(s)	321, 384, 475, 792
BstAFI	CTTAAG	1 cut(s)	1456
BstAUI	TGTACA	3 cut(s)	852, 1696, 1713
BstBAI	YACGTR	2 cut(s)	612, 1588
BstC8I	GCNNGC	8 cut(s)	184, 217, 352, 590, 886, 1274, 1568, 1579
BstDEI	CTNAG	5 cut(s)	402, 674, 814, 1239, 1528
BstDSI	CCRYGG	3 cut(s)	231, 390, 494
BstF5I	GGATG	5 cut(s)	907, 937, 1220, 1504, 1579
BstHHI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 454, 588, 734, 907
BstMAI	GTCTC	2 cut(s)	1282, 1302
BstMCI	CGRYCG	7 cut(s)	136, 328, 373, 556, 682, 762, 823
BstNI	CCWGG	3 cut(s)	398, 1113, 1220
BstPAI	GACNNNNGTC	1 cut(s)	1294
BstSCI	CCNGG	9 cut(s)	127, 298, 327, 396, 761, 970, 971, 1111, 1218
BstSFI	CTRYAG	1 cut(s)	1406
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	279, 332, 859, 907, 1657
BstV2I	GAAGAC	1 cut(s)	1440
BstXI	CCANNNNNNTGG	2 cut(s)	986, 1193
BstZI	CGGCCG	3 cut(s)	133, 553, 759
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	9 cut(s)	27, 135, 332, 410, 555, 761, 779, 1185, 1581
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	3 cut(s)	231, 390, 494
BtsCI	GGATG	5 cut(s)	907, 937, 1220, 1504, 1579
BtsI	GCAGTG	2 cut(s)	238, 1283
BtsIMutI	CAGTG	4 cut(s)	238, 984, 1097, 1283
BveI	ACCTGC	2 cut(s)	233, 508
Cac8I	GCNNGC	8 cut(s)	184, 217, 352, 590, 886, 1274, 1568, 1579
CaiI	CAGNNNCTG	1 cut(s)	1118
CciI	TCATGA	2 cut(s)	618, 940
CciNI	GCGGCCGC	1 cut(s)	133
CfoI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 454, 588, 734, 907
Cfr13I	GGNCC	3 cut(s)	330, 394, 1222
Cfr42I	CCGCGG	1 cut(s)	234
Cfr9I	CCCGGG	1 cut(s)	971
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	5 cut(s)	106, 208, 392, 464, 800
CsiI	ACCWGGT	1 cut(s)	1111
Csp6I	GTAC	5 cut(s)	448, 853, 1618, 1697, 1714
CspCI	CAANNNNNGTGG	2 cut(s)	1374, 1409
CviAII	CATG	8 cut(s)	619, 787, 908, 941, 1083, 1174, 1429, 1684
CviQI	GTAC	5 cut(s)	448, 853, 1618, 1697, 1714
DdeI	CTNAG	5 cut(s)	402, 674, 814, 1239, 1528
EaeI	YGGCCR	6 cut(s)	25, 133, 553, 759, 1183, 1579
EagI	CGGCCG	3 cut(s)	133, 553, 759
Eam1104I	CTCTTC	2 cut(s)	344, 704
EarI	CTCTTC	2 cut(s)	344, 704
EciI	GGCGGA	2 cut(s)	137, 273
Ecl136II	GAGCTC	2 cut(s)	166, 337
EclXI	CGGCCG	3 cut(s)	133, 553, 759
Eco130I	CCWWGG	2 cut(s)	575, 979
Eco24I	GRGCYC	4 cut(s)	168, 339, 594, 1253
Eco47I	GGWCC	2 cut(s)	394, 1222
Eco52I	CGGCCG	3 cut(s)	133, 553, 759
Eco53kI	GAGCTC	2 cut(s)	166, 337
Eco57I	CTGAAG	1 cut(s)	617
Eco72I	CACGTG	1 cut(s)	612
Eco88I	CYCGRG	2 cut(s)	538, 971
EcoICRI	GAGCTC	2 cut(s)	166, 337
EcoRI	GAATTC	2 cut(s)	911, 1177
EcoRII	CCWGG	3 cut(s)	396, 1111, 1218
EcoT14I	CCWWGG	2 cut(s)	575, 979
EcoT38I	GRGCYC	4 cut(s)	168, 339, 594, 1253
ErhI	CCWWGG	2 cut(s)	575, 979
FaeI	CATG	8 cut(s)	622, 790, 911, 944, 1086, 1177, 1432, 1687
FaqI	GGGAC	1 cut(s)	594
FatI	CATG	8 cut(s)	618, 786, 907, 940, 1082, 1173, 1428, 1683
FauI	CCCGC	3 cut(s)	581, 727, 740
FauNDI	CATATG	1 cut(s)	1075
FblI	GTMKAC	5 cut(s)	318, 324, 366, 1067, 1089
FokI	GGATG	5 cut(s)	914, 944, 1227, 1511, 1586
FriOI	GRGCYC	4 cut(s)	168, 339, 594, 1253
FspAI	RTGCGCAY	1 cut(s)	906
FspI	TGCGCA	1 cut(s)	906
GlaI	GCGC	9 cut(s)	97, 139, 178, 229, 349, 453, 587, 733, 906
GsaI	CCCAGC	2 cut(s)	43, 842
GsuI	CTGGAG	1 cut(s)	1008
HaeIII	GGCC	9 cut(s)	27, 135, 332, 410, 555, 761, 779, 1185, 1581
HgaI	GACGC	5 cut(s)	106, 208, 392, 464, 800
HhaI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 454, 588, 734, 907
Hin1I	GRCGYC	4 cut(s)	321, 384, 475, 792
Hin1II	CATG	8 cut(s)	622, 790, 911, 944, 1086, 1177, 1432, 1687
Hin6I	GCGC	9 cut(s)	96, 138, 177, 228, 348, 452, 586, 732, 905
HinP1I	GCGC	9 cut(s)	96, 138, 177, 228, 348, 452, 586, 732, 905
HincII	GTYRAC	3 cut(s)	319, 325, 1651
HindII	GTYRAC	3 cut(s)	319, 325, 1651
HindIII	AAGCTT	1 cut(s)	1322
HpaI	GTTAAC	1 cut(s)	1651
HphI	GGTGA	3 cut(s)	214, 532, 1297
Hpy166II	GTNNAC	8 cut(s)	238, 319, 325, 367, 1068, 1090, 1134, 1651
Hpy188I	TCNGA	9 cut(s)	68, 405, 480, 530, 825, 1036, 1255, 1515, 1531
Hpy188III	TCNNGA	3 cut(s)	466, 619, 941
Hpy8I	GTNNAC	8 cut(s)	238, 319, 325, 367, 1068, 1090, 1134, 1651
Hpy99I	CGWCG	7 cut(s)	10, 320, 323, 326, 386, 480, 530
HpyAV	CCTTC	5 cut(s)	73, 100, 940, 953, 1384
HpyCH4III	ACNGT	3 cut(s)	857, 1193, 1226
HpyCH4IV	ACGT	5 cut(s)	321, 611, 797, 1064, 1587
HpyCH4V	TGCA	9 cut(s)	354, 875, 1121, 1155, 1166, 1173, 1408, 1673, 1742
HpyF3I	CTNAG	5 cut(s)	402, 674, 814, 1239, 1528
HpySE526I	ACGT	5 cut(s)	321, 611, 797, 1064, 1587
Hsp92I	GRCGYC	4 cut(s)	321, 384, 475, 792
Hsp92II	CATG	8 cut(s)	622, 790, 911, 944, 1086, 1177, 1432, 1687
HspAI	GCGC	9 cut(s)	96, 138, 177, 228, 348, 452, 586, 732, 905
Kpn2I	TCCGGA	1 cut(s)	465
KspAI	GTTAAC	1 cut(s)	1651
KspI	CCGCGG	1 cut(s)	234
LguI	GCTCTTC	2 cut(s)	344, 704
LmnI	GCTCC	7 cut(s)	53, 86, 171, 253, 648, 975, 1516
Lsp1109I	GCAGC	5 cut(s)	279, 332, 859, 907, 1657
LweI	GCATC	7 cut(s)	164, 892, 915, 1032, 1205, 1564, 1621
MabI	ACCWGGT	1 cut(s)	1111
MaeII	ACGT	5 cut(s)	321, 611, 797, 1064, 1587
MaeIII	GTNAC	4 cut(s)	220, 782, 1552, 1588
MboII	GAAGA	8 cut(s)	331, 623, 718, 721, 907, 1359, 1440, 1475
MhlI	GDGCHC	5 cut(s)	168, 306, 339, 594, 1253
MlsI	TGGCCA	2 cut(s)	1185, 1581
MluCI	AATT	6 cut(s)	598, 877, 911, 1177, 1262, 1532
MluNI	TGGCCA	2 cut(s)	1185, 1581
MlyI	GAGTC	5 cut(s)	200, 255, 296, 553, 1304
MmeI	TCCRAC	3 cut(s)	458, 508, 1404
Mox20I	TGGCCA	2 cut(s)	1185, 1581
MroI	TCCGGA	1 cut(s)	465
MroXI	GAANNNNTTC	1 cut(s)	668
MscI	TGGCCA	2 cut(s)	1185, 1581
MseI	TTAA	3 cut(s)	1457, 1604, 1650
MslI	CAYNNNNRTG	1 cut(s)	923
Msp20I	TGGCCA	2 cut(s)	1185, 1581
MspA1I	CMGCKG	1 cut(s)	233
MspCI	CTTAAG	1 cut(s)	1456
MspR9I	CCNGG	9 cut(s)	129, 300, 329, 398, 763, 972, 973, 1113, 1220
Mva1269I	GAATGC	1 cut(s)	1363
MvaI	CCWGG	3 cut(s)	398, 1113, 1220
NciI	CCSGG	6 cut(s)	129, 300, 329, 763, 972, 973
NdeI	CATATG	1 cut(s)	1075
NlaIII	CATG	8 cut(s)	622, 790, 911, 944, 1086, 1177, 1432, 1687
NlaIV	GGNNCC	4 cut(s)	82, 977, 1110, 1434
NmeAIII	GCCGAG	2 cut(s)	310, 358
NmuCI	GTSAC	3 cut(s)	220, 782, 1588
NotI	GCGGCCGC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	906
PaeR7I	CTCGAG	1 cut(s)	538
PagI	TCATGA	2 cut(s)	618, 940
PaqCI	CACCTGC	2 cut(s)	233, 508
PciSI	GCTCTTC	2 cut(s)	344, 704
PcsI	WCGNNNNNNNCGW	4 cut(s)	312, 318, 330, 387
PctI	GAATGC	1 cut(s)	1363
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	5 cut(s)	460, 937, 1144, 1462, 1480
PflFI	GACNNNGTC	1 cut(s)	1129
Ple19I	CGATCG	2 cut(s)	682, 823
PleI	GAGTC	5 cut(s)	199, 255, 295, 553, 1303
PmaCI	CACGTG	1 cut(s)	612
PmlI	CACGTG	1 cut(s)	612
PpsI	GAGTC	5 cut(s)	199, 255, 295, 553, 1303
Ppu21I	YACGTR	2 cut(s)	612, 1588
PshAI	GACNNNNGTC	1 cut(s)	1294
Psp124BI	GAGCTC	2 cut(s)	168, 339
Psp6I	CCWGG	3 cut(s)	396, 1111, 1218
PspCI	CACGTG	1 cut(s)	612
PspFI	CCCAGC	2 cut(s)	39, 838
PspGI	CCWGG	3 cut(s)	396, 1111, 1218
PspN4I	GGNNCC	4 cut(s)	82, 977, 1110, 1434
PspPI	GGNCC	3 cut(s)	330, 394, 1222
PspXI	VCTCGAGB	1 cut(s)	538
PstI	CTGCAG	1 cut(s)	1410
PstNI	CAGNNNCTG	1 cut(s)	1118
PsyI	GACNNNGTC	1 cut(s)	1129
PvuI	CGATCG	2 cut(s)	682, 823
RsaI	GTAC	5 cut(s)	449, 854, 1619, 1698, 1715
RsaNI	GTAC	5 cut(s)	448, 853, 1618, 1697, 1714
RseI	CAYNNNNRTG	1 cut(s)	923
SacI	GAGCTC	2 cut(s)	168, 339
SacII	CCGCGG	1 cut(s)	234
SalI	GTCGAC	2 cut(s)	317, 323
SapI	GCTCTTC	2 cut(s)	344, 704
SaqAI	TTAA	3 cut(s)	1457, 1604, 1650
Sau96I	GGNCC	3 cut(s)	330, 394, 1222
SchI	GAGTC	5 cut(s)	200, 255, 296, 553, 1304
ScrFI	CCNGG	9 cut(s)	129, 300, 329, 398, 763, 972, 973, 1113, 1220
SduI	GDGCHC	5 cut(s)	168, 306, 339, 594, 1253
SexAI	ACCWGGT	1 cut(s)	1111
SfaNI	GCATC	7 cut(s)	164, 892, 915, 1032, 1205, 1564, 1621
SfcI	CTRYAG	1 cut(s)	1406
Sfr274I	CTCGAG	1 cut(s)	538
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	2 cut(s)	394, 1222
SlaI	CTCGAG	1 cut(s)	538
SmaI	CCCGGG	1 cut(s)	973
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	3 cut(s)	538, 1301, 1456
SmoI	CTYRAG	3 cut(s)	538, 1301, 1456
Sse9I	AATT	6 cut(s)	598, 877, 911, 1177, 1262, 1532
SstI	GAGCTC	2 cut(s)	168, 339
StyD4I	CCNGG	9 cut(s)	127, 298, 327, 396, 761, 970, 971, 1111, 1218
StyI	CCWWGG	2 cut(s)	575, 979
TaaI	ACNGT	3 cut(s)	857, 1193, 1226
TaiI	ACGT	5 cut(s)	324, 614, 800, 1067, 1590
TaqI	TCGA	9 cut(s)	8, 143, 318, 324, 381, 483, 539, 923, 1142
TasI	AATT	6 cut(s)	598, 877, 911, 1177, 1262, 1532
TatI	WGTACW	3 cut(s)	852, 1696, 1713
TfiI	GAWTC	5 cut(s)	460, 937, 1144, 1462, 1480
Tru1I	TTAA	3 cut(s)	1457, 1604, 1650
Tru9I	TTAA	3 cut(s)	1457, 1604, 1650
TscAI	CASTG	4 cut(s)	245, 991, 1104, 1283
TseFI	GTSAC	3 cut(s)	220, 782, 1588
TseI	GCWGC	5 cut(s)	292, 345, 872, 895, 1670
Tsp45I	GTSAC	3 cut(s)	220, 782, 1588
TspDTI	ATGAA	6 cut(s)	607, 635, 907, 924, 929, 1190
TspGWI	ACGGA	1 cut(s)	616
TspMI	CCCGGG	1 cut(s)	971
TspRI	CASTG	4 cut(s)	245, 991, 1104, 1283
Tth111I	GACNNNGTC	1 cut(s)	1129
Vha464I	CTTAAG	1 cut(s)	1456
VpaK11BI	GGWCC	2 cut(s)	394, 1222
XapI	RAATTY	5 cut(s)	877, 911, 1177, 1262, 1532
XhoI	CTCGAG	1 cut(s)	538
XmaI	CCCGGG	1 cut(s)	971
XmiI	GTMKAC	5 cut(s)	318, 324, 366, 1067, 1089
XmnI	GAANNNNTTC	1 cut(s)	668
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.