Rmu_co8488985.1_g000001

Ubiquitin carboxyl-terminal hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8488985.1
OG0009945
Physical Location & Seq
Forward (+)
1 .. 2392
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8488985.1_g000001.1.cds

Sequence Viewer

Length: 1042 bp
gatcggaagccttatagtccagccaagttcttgtacagttggtggcaatacgctgcaaatttggcgagctatgagcagcaggatgcgcatgaattcttcatttcgatgctggatgggattcatgagaaggtggaaaaggaggggaggaaacccgggagccaagggtgagtctaggttccttgcttttgccctaggagttgacaagtgctcacagtttagggttaatattcaccctctgcctgctggcttgatggcgttatccgcttcactccatgcaggcactggagattgttgtgtggctcatagagttttttctggcatcttgcgatctgatgttatgtgtatggcttgtggttttacgtctacaacatatgatccatgcgtcgacatttcactggatttggaaccaggttctgcaaagacgatgtccacaaagtcgaatcattcttgcaatggcaatgcagattgcatgaattctggacaaaactgtggcacatctacccttgtgggatgcctggaccgttttacaagacctgagagattgggctctgaccagaaatttttttgccagcagtgtcaggtgagacaagagtctctcaagcaaatgtccattaggaagcttcctttagtttcttgcttccatatcaaacgatttgagcattcttcaatacgaaagatgtcaaggaaggtggatcgttatctgcagtttccattttcgttggacatggcaccatatctttcgtcttccatcttaaggaatcgatttgggaataggattcttccttttgatggggatgagccagaagctccgaatgagttatgctcagaatttgagttgtttgctgtcgtaactcacacaggcaagctggatgctggccattacgtgacttacttgcgattaagtaatcattggtacaagtgtgatgatgcttggatcacacaagttaacgaggacattgtgagggctgcacaaggctacatgatgttttatgtacagaaaatgctattttacaaagcaagtgagaaacagggttctgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UCH zf-UBP

Protein Analysis

346

Amino Acids

38.9

Weight (kDa)

9.08

Isoelectric Point (pI)

56.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 728
AccI GTMKAC 2 cut(s) 363, 385
AciI CCGC 1 cut(s) 262
AclWI GGATC 3 cut(s) 369, 700, 942
AcoI YGGCCR 1 cut(s) 875
AcsI RAATTY 5 cut(s) 58, 92, 473, 558, 828
AfaI GTAC 3 cut(s) 35, 915, 994
AfiI CCNNNNNNNGG 2 cut(s) 754, 789
AflII CTTAAG 1 cut(s) 752
AgsI TTSAA 1 cut(s) 667
AjnI CCWGG 2 cut(s) 407, 514
AluBI AGCT 4 cut(s) 69, 620, 807, 866
AluI AGCT 4 cut(s) 69, 620, 807, 866
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 2 cut(s) 578, 598
AlwI GGATC 3 cut(s) 369, 700, 942
AlwNI CAGNNNCTG 2 cut(s) 282, 414
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 875
ApeKI GCWGC 3 cut(s) 53, 76, 966
ApoI RAATTY 5 cut(s) 58, 92, 473, 558, 828
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
AspA2I CCTAGG 1 cut(s) 191
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 1 cut(s) 518
AsuC2I CCSGG 2 cut(s) 153, 154
AsuHPI GGTGA 3 cut(s) 177, 222, 593
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 1 cut(s) 518
AvrII CCTAGG 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 905, 938
BalI TGGCCA 1 cut(s) 877
BanI GGYRCC 1 cut(s) 728
BanII GRGCYC 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 40, 88, 953
BccI CCATC 4 cut(s) 107, 245, 756, 783
BciT130I CCWGG 2 cut(s) 409, 516
BcnI CCSGG 2 cut(s) 153, 154
BcoDI GTCTC 2 cut(s) 578, 598
BfaI CTAG 2 cut(s) 172, 192
BfmI CTRYAG 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 752
BisI GCNGC 3 cut(s) 54, 77, 967
BlnI CCTAGG 1 cut(s) 191
BlsI GCNGC 3 cut(s) 55, 78, 968
Bme1390I CCNGG 4 cut(s) 153, 154, 409, 516
Bme18I GGWCC 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 518
BmiI GGNNCC 4 cut(s) 158, 177, 406, 730
BmrFI CCNGG 4 cut(s) 153, 154, 409, 516
BmsI GCATC 6 cut(s) 73, 96, 328, 501, 860, 917
BoxI GACNNNNGTC 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 736
BplI GAGNNNNNCTC 2 cut(s) 807, 839
BpmI CTGGAG 1 cut(s) 304
BpuEI CTTGAG 1 cut(s) 582
BpuMI CCSGG 2 cut(s) 153, 154
Bsa29I ATCGAT 1 cut(s) 761
BsaAI YACGTR 1 cut(s) 884
BsaBI GATNNNNATC 1 cut(s) 697
BsaJI CCNNGG 3 cut(s) 152, 160, 191
Bsc4I CCNNNNNNNGG 2 cut(s) 754, 789
Bse1I ACTGG 2 cut(s) 287, 400
Bse3DI GCAATG 2 cut(s) 458, 464
Bse8I GATNNNNATC 1 cut(s) 697
BseBI CCWGG 2 cut(s) 409, 516
BseCI ATCGAT 1 cut(s) 761
BseDI CCNNGG 3 cut(s) 152, 160, 191
BseGI GGATG 5 cut(s) 88, 118, 516, 800, 875
BseJI GATNNNNATC 1 cut(s) 697
BseLI CCNNNNNNNGG 2 cut(s) 754, 789
BseMI GCAATG 2 cut(s) 458, 464
BseMII CTCAG 2 cut(s) 526, 838
BseNI ACTGG 2 cut(s) 287, 400
BseXI GCAGC 3 cut(s) 40, 88, 953
BsgI GTGCAG 1 cut(s) 952
BshFI GGCC 1 cut(s) 877
BshNI GGYRCC 1 cut(s) 728
BshVI ATCGAT 1 cut(s) 761
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 153
BslI CCNNNNNNNGG 2 cut(s) 754, 789
BsmAI GTCTC 2 cut(s) 578, 598
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 1 cut(s) 877
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 210, 549
Bsp1407I TGTACA 2 cut(s) 33, 992
Bsp143I GATC 4 cut(s) 327, 374, 692, 934
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 877
BspCNI CTCAG 2 cut(s) 527, 837
BspDI ATCGAT 1 cut(s) 761
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 4 cut(s) 158, 177, 406, 730
BspMAI CTGCAG 1 cut(s) 706
BspPI GGATC 3 cut(s) 369, 700, 942
BspT107I GGYRCC 1 cut(s) 728
BspTI CTTAAG 1 cut(s) 752
BsrDI GCAATG 2 cut(s) 458, 464
BsrGI TGTACA 2 cut(s) 33, 992
BsrI ACTGG 2 cut(s) 287, 400
BssECI CCNNGG 3 cut(s) 152, 160, 191
BssMI GATC 4 cut(s) 327, 374, 692, 934
BssT1I CCWWGG 2 cut(s) 160, 191
Bst2UI CCWGG 2 cut(s) 409, 516
Bst4CI ACNGT 4 cut(s) 38, 214, 489, 522
BstAFI CTTAAG 1 cut(s) 752
BstAUI TGTACA 2 cut(s) 33, 992
BstBAI YACGTR 1 cut(s) 884
BstC8I GCNNGC 7 cut(s) 67, 241, 245, 278, 570, 864, 875
BstDEI CTNAG 2 cut(s) 535, 824
BstF5I GGATG 5 cut(s) 88, 118, 516, 800, 875
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 5 cut(s) 4, 330, 377, 695, 937
BstMAI GTCTC 2 cut(s) 578, 598
BstMBI GATC 4 cut(s) 327, 374, 692, 934
BstMWI GCNNNNNNNGC 3 cut(s) 62, 85, 261
BstNI CCWGG 2 cut(s) 409, 516
BstPAI GACNNNNGTC 1 cut(s) 590
BstSCI CCNGG 4 cut(s) 151, 152, 407, 514
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 3 cut(s) 40, 88, 953
BstV2I GAAGAC 1 cut(s) 736
Bsu15I ATCGAT 1 cut(s) 761
BsuRI GGCC 1 cut(s) 877
BsuTUI ATCGAT 1 cut(s) 761
BtsCI GGATG 5 cut(s) 88, 118, 516, 800, 875
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 280, 393, 579
Cac8I GCNNGC 7 cut(s) 67, 241, 245, 278, 570, 864, 875
CaiI CAGNNNCTG 2 cut(s) 282, 414
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 518
Cfr9I CCCGGG 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 761
CseI GACGC 1 cut(s) 371
CsiI ACCWGGT 1 cut(s) 407
Csp6I GTAC 3 cut(s) 34, 914, 993
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 7 cut(s) 89, 122, 273, 379, 470, 725, 980
CviQI GTAC 3 cut(s) 34, 914, 993
DdeI CTNAG 2 cut(s) 535, 824
DpnI GATC 5 cut(s) 3, 329, 376, 694, 936
DpnII GATC 4 cut(s) 327, 374, 692, 934
EaeI YGGCCR 1 cut(s) 875
Eco130I CCWWGG 2 cut(s) 160, 191
Eco24I GRGCYC 1 cut(s) 549
Eco47I GGWCC 1 cut(s) 518
Eco88I CYCGRG 1 cut(s) 152
EcoRI GAATTC 2 cut(s) 92, 473
EcoRII CCWGG 2 cut(s) 407, 514
EcoT14I CCWWGG 2 cut(s) 160, 191
EcoT38I GRGCYC 1 cut(s) 549
ErhI CCWWGG 2 cut(s) 160, 191
FaeI CATG 7 cut(s) 92, 125, 276, 382, 473, 728, 983
FatI CATG 7 cut(s) 88, 121, 272, 378, 469, 724, 979
FauNDI CATATG 1 cut(s) 371
FblI GTMKAC 2 cut(s) 363, 385
Fnu4HI GCNGC 3 cut(s) 54, 77, 967
FokI GGATG 5 cut(s) 95, 125, 523, 807, 882
FriOI GRGCYC 1 cut(s) 549
Fsp4HI GCNGC 3 cut(s) 54, 77, 967
FspAI RTGCGCAY 1 cut(s) 87
FspBI CTAG 2 cut(s) 172, 192
FspI TGCGCA 1 cut(s) 87
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 54, 77, 967
GsuI CTGGAG 1 cut(s) 304
HaeIII GGCC 1 cut(s) 877
HapII CCGG 1 cut(s) 153
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 88
Hin1II CATG 7 cut(s) 92, 125, 276, 382, 473, 728, 983
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HincII GTYRAC 3 cut(s) 200, 386, 947
HindII GTYRAC 3 cut(s) 200, 386, 947
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 6 cut(s) 118, 168, 440, 591, 758, 776
HpaI GTTAAC 1 cut(s) 947
HpaII CCGG 1 cut(s) 153
HphI GGTGA 3 cut(s) 177, 222, 593
Hpy166II GTNNAC 5 cut(s) 200, 364, 386, 430, 947
Hpy188I TCNGA 5 cut(s) 6, 332, 551, 811, 827
Hpy188III TCNNGA 2 cut(s) 122, 478
Hpy8I GTNNAC 5 cut(s) 200, 364, 386, 430, 947
Hpy99I CGWCG 1 cut(s) 387
HpyAV CCTTC 2 cut(s) 121, 680
HpyCH4III ACNGT 4 cut(s) 38, 214, 489, 522
HpyCH4IV ACGT 2 cut(s) 360, 883
HpyCH4V TGCA 9 cut(s) 56, 276, 417, 451, 462, 469, 704, 969, 1038
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 85, 261
HpyF3I CTNAG 2 cut(s) 535, 824
HpySE526I ACGT 2 cut(s) 360, 883
Hsp92II CATG 7 cut(s) 92, 125, 276, 382, 473, 728, 983
HspAI GCGC 1 cut(s) 86
KspAI GTTAAC 1 cut(s) 947
Kzo9I GATC 4 cut(s) 327, 374, 692, 934
LmnI GCTCC 2 cut(s) 156, 812
Lsp1109I GCAGC 3 cut(s) 40, 88, 953
LweI GCATC 6 cut(s) 73, 96, 328, 501, 860, 917
MabI ACCWGGT 1 cut(s) 407
MaeI CTAG 2 cut(s) 172, 192
MaeII ACGT 2 cut(s) 360, 883
MaeIII GTNAC 2 cut(s) 848, 884
MalI GATC 5 cut(s) 3, 329, 376, 694, 936
MboI GATC 4 cut(s) 327, 374, 692, 934
MboII GAAGA 4 cut(s) 88, 655, 736, 771
MhlI GDGCHC 2 cut(s) 210, 549
MlsI TGGCCA 1 cut(s) 877
MluCI AATT 5 cut(s) 58, 92, 473, 558, 828
MluNI TGGCCA 1 cut(s) 877
MlyI GAGTC 2 cut(s) 177, 600
MmeI TCCRAC 1 cut(s) 700
MnlI CCTC 5 cut(s) 133, 138, 244, 944, 955
Mox20I TGGCCA 1 cut(s) 877
MscI TGGCCA 1 cut(s) 877
MseI TTAA 4 cut(s) 223, 753, 900, 946
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 877
MspCI CTTAAG 1 cut(s) 752
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 4 cut(s) 153, 154, 409, 516
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 2 cut(s) 409, 516
MwoI GCNNNNNNNGC 3 cut(s) 62, 85, 261
NciI CCSGG 2 cut(s) 153, 154
NdeI CATATG 1 cut(s) 371
NdeII GATC 4 cut(s) 327, 374, 692, 934
NlaIII CATG 7 cut(s) 92, 125, 276, 382, 473, 728, 983
NlaIV GGNNCC 4 cut(s) 158, 177, 406, 730
NmuCI GTSAC 1 cut(s) 884
NsbI TGCGCA 1 cut(s) 87
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 4 cut(s) 118, 440, 758, 776
PflFI GACNNNGTC 1 cut(s) 425
PkrI GCNGC 3 cut(s) 55, 78, 968
PleI GAGTC 2 cut(s) 176, 599
PpsI GAGTC 2 cut(s) 176, 599
Ppu21I YACGTR 1 cut(s) 884
PshAI GACNNNNGTC 1 cut(s) 590
Psp6I CCWGG 2 cut(s) 407, 514
PspGI CCWGG 2 cut(s) 407, 514
PspN4I GGNNCC 4 cut(s) 158, 177, 406, 730
PspPI GGNCC 1 cut(s) 518
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 2 cut(s) 282, 414
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 3 cut(s) 35, 915, 994
RsaNI GTAC 3 cut(s) 34, 914, 993
RseI CAYNNNNRTG 1 cut(s) 104
SalI GTCGAC 1 cut(s) 384
SaqAI TTAA 4 cut(s) 223, 753, 900, 946
SatI GCNGC 3 cut(s) 54, 77, 967
Sau3AI GATC 4 cut(s) 327, 374, 692, 934
Sau96I GGNCC 1 cut(s) 518
SchI GAGTC 2 cut(s) 177, 600
ScrFI CCNGG 4 cut(s) 153, 154, 409, 516
SduI GDGCHC 2 cut(s) 210, 549
SexAI ACCWGGT 1 cut(s) 407
SfaNI GCATC 6 cut(s) 73, 96, 328, 501, 860, 917
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 1 cut(s) 518
SmaI CCCGGG 1 cut(s) 154
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 597, 752
SmoI CTYRAG 2 cut(s) 597, 752
Sse9I AATT 5 cut(s) 58, 92, 473, 558, 828
SsiI CCGC 1 cut(s) 262
SspI AATATT 1 cut(s) 227
SspMI CTAG 2 cut(s) 172, 192
StyD4I CCNGG 4 cut(s) 151, 152, 407, 514
StyI CCWWGG 2 cut(s) 160, 191
TaaI ACNGT 4 cut(s) 38, 214, 489, 522
TaiI ACGT 2 cut(s) 363, 886
TaqI TCGA 4 cut(s) 104, 385, 438, 761
TasI AATT 5 cut(s) 58, 92, 473, 558, 828
TatI WGTACW 2 cut(s) 33, 992
TfiI GAWTC 4 cut(s) 118, 440, 758, 776
Tru1I TTAA 4 cut(s) 223, 753, 900, 946
Tru9I TTAA 4 cut(s) 223, 753, 900, 946
TscAI CASTG 3 cut(s) 287, 400, 579
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 3 cut(s) 53, 76, 966
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 4 cut(s) 88, 105, 110, 486
TspMI CCCGGG 1 cut(s) 152
TspRI CASTG 3 cut(s) 287, 400, 579
Tth111I GACNNNGTC 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 752
VpaK11BI GGWCC 1 cut(s) 518
XapI RAATTY 5 cut(s) 58, 92, 473, 558, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 279
XmaI CCCGGG 1 cut(s) 152
XmaJI CCTAGG 1 cut(s) 191
XmiI GTMKAC 2 cut(s) 363, 385
XspI CTAG 2 cut(s) 172, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.