Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033647.1

Orthogroup ID

OG0009945

Physical Location & Seq

Genomic Coordinates Forward (+)

10201 .. 11354

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033647.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atgtcgtcgatgaccaagatcaacggccacgctctaccccagccctgctcccacctcgccgccttccgatccaaaaacggctccaaacccttccgcgccttacaggactgcctccgcgtcaagccccccggcggccgcgcctcgatccgccgcgatccccacgagctcccccgatgcgccgcctgcggcgagtcagctcactcgcggctctacgcctgcgtcacctgcgccgcggttcactgccacgctccctccggcggactctcccacgcggcggcccacgccgagtcgctgcctccggggcacgagatcgccgtcgacgtcgaccgggccgagctcttctgctgcgcgtgcagggatcaagtctacgaccgcgacttcgacgccgccgtggtcctggctcagacggcctcgcccaccaccgcctcctccgcgatccagcagtacgcgccggagaatctccggaaacggcgtcggatcgattacaagccgtggtcgccggatttgagtgagcaggtgatcgtcggaaaaaactcgagcctcctccacggccggactccctccgctttgccttggggactgcgcgggctcaacaatttggggaacacgtgcttcatgaactcggttcttcaggcattgctccacacgccgccgctgcggaactacttcctcagcgatcggcacaaccgctacttttgccagaagaagagcaatgccgataagaaaagcgcgggtaatagtggcgggaacacggcggccgggtctgtgtgcttggcctgtgacatggacgccacgttttcggcggttttctcaggcgatcggaagccttatagtccagccaagttcttgtacagttggtggcaatacgctgcaaatttggcgagctatgagcagcaggatgcgcatgaattcttcatttcgatgctggatgggattcatgagaaggtggaaaaggaggggaggaaacccgggagccaaggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

327

Amino Acids

35.72

Weight (kDa)

8.89

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02230
malus_domestica	MD02G1020200.v1.1 MD15G1163000.v1.1
prunus_persica	Prupe.7G251600_v2.0.a1
pyrus_communis	pycom15g14660
rosa_chinensis	RchiOBHm_Chr2g0087351 RchiOBHm_Chr2g0087361
rosa_laevigata	RLG00000015859
rosa_multiflora	Rmu_co8225392.1_g000001 Rmu_co8488985.1_g000001 Rmu_sc0003367.1_g000026 Rmu_sc0006064.1_g000003 Rmu_sc0033647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153670
rosa_rugosa	Rorug01G0474400
rosa_samantha	Rh2AG028000 Rh2AG028100 Rh2BG027500 Rh2CG028300 Rh2DG028100
rosa_wichuraiana	Rw2G002220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	233, 505
AatII	GACGTC	1 cut(s)	324
Acc16I	TGCGCA	1 cut(s)	903
Acc36I	ACCTGC	2 cut(s)	233, 505
AccI	GTMKAC	3 cut(s)	318, 324, 366
AccIII	TCCGGA	1 cut(s)	462
AclWI	GGATC	6 cut(s)	63, 139, 149, 366, 430, 485
AcoI	YGGCCR	4 cut(s)	25, 133, 550, 756
AcsI	RAATTY	2 cut(s)	874, 908
AcuI	CTGAAG	1 cut(s)	614
AcvI	CACGTG	1 cut(s)	609
AcyI	GRCGYC	4 cut(s)	321, 384, 472, 789
AfaI	GTAC	2 cut(s)	446, 851
AfiI	CCNNNNNNNGG	3 cut(s)	131, 257, 274
AflIII	ACRYGT	1 cut(s)	606
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	4 cut(s)	166, 197, 337, 885
AluI	AGCT	4 cut(s)	166, 197, 337, 885
Alw21I	GWGCWC	2 cut(s)	168, 339
AlwI	GGATC	6 cut(s)	63, 139, 149, 366, 430, 485
Ama87I	CYCGRG	2 cut(s)	535, 968
Aor13HI	TCCGGA	1 cut(s)	462
AoxI	GGCC	8 cut(s)	25, 133, 276, 330, 408, 550, 756, 774
ApeKI	GCWGC	5 cut(s)	292, 345, 655, 869, 892
ApoI	RAATTY	2 cut(s)	874, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	362, 394
Asp700I	GAANNNNTTC	1 cut(s)	665
AspLEI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 451, 585, 731, 904
AspS9I	GGNCC	3 cut(s)	277, 330, 394
AsuC2I	CCSGG	6 cut(s)	129, 300, 329, 760, 969, 970
AsuHPI	GGTGA	2 cut(s)	214, 529
AvaI	CYCGRG	2 cut(s)	535, 968
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	306
BanII	GRGCYC	3 cut(s)	168, 339, 591
BauI	CACGAG	2 cut(s)	161, 305
BbrPI	CACGTG	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	168, 339
BbvCI	CCTCAGC	1 cut(s)	671
BbvI	GCAGC	5 cut(s)	279, 332, 642, 856, 904
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	9 cut(s)	40, 94, 299, 374, 423, 475, 485, 565, 768
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	6 cut(s)	129, 300, 329, 760, 969, 970
BfuAI	ACCTGC	2 cut(s)	233, 505
BglI	GCCNNNNNGGC	1 cut(s)	301
Bme1390I	CCNGG	7 cut(s)	129, 300, 329, 398, 760, 969, 970
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	2 cut(s)	535, 968
BmgT120I	GGNCC	3 cut(s)	277, 330, 394
BmiI	GGNNCC	2 cut(s)	82, 974
BmrFI	CCNGG	7 cut(s)	129, 300, 329, 398, 760, 969, 970
BmsI	GCATC	3 cut(s)	164, 889, 912
Bpu10I	CCTNAGC	1 cut(s)	671
BpuMI	CCSGG	6 cut(s)	129, 300, 329, 760, 969, 970
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	1 cut(s)	609
BsaHI	GRCGYC	4 cut(s)	321, 384, 472, 789
BsaJI	CCNNGG	9 cut(s)	127, 231, 299, 390, 491, 547, 572, 968, 976
BsaWI	WCCGGW	1 cut(s)	462
BsaXI	ACNNNNNCTCC	3 cut(s)	236, 266, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 257, 274
Bse3DI	GCAATG	2 cut(s)	635, 718
BseAI	TCCGGA	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	398
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	9 cut(s)	127, 231, 299, 390, 491, 547, 572, 968, 976
BseGI	GGATG	2 cut(s)	904, 934
BseLI	CCNNNNNNNGG	3 cut(s)	131, 257, 274
BseMI	GCAATG	2 cut(s)	635, 718
BseMII	CTCAG	3 cut(s)	416, 685, 825
BseRI	GAGGAG	2 cut(s)	418, 533
BseSI	GKGCMC	1 cut(s)	306
BseX3I	CGGCCG	3 cut(s)	133, 550, 756
BseXI	GCAGC	5 cut(s)	279, 332, 642, 856, 904
BseYI	CCCAGC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	373
Bsh1285I	CGRYCG	7 cut(s)	136, 328, 373, 553, 679, 759, 820
BshFI	GGCC	8 cut(s)	27, 135, 278, 332, 410, 552, 758, 776
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	7 cut(s)	136, 328, 373, 553, 679, 759, 820
BsiHKAI	GWGCWC	2 cut(s)	168, 339
BsiHKCI	CYCGRG	2 cut(s)	535, 968
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	3 cut(s)	131, 257, 274
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	8 cut(s)	27, 135, 278, 332, 410, 552, 758, 776
BsoBI	CYCGRG	2 cut(s)	535, 968
Bsp1286I	GDGCHC	4 cut(s)	168, 306, 339, 591
Bsp13I	TCCGGA	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	849
BspANI	GGCC	8 cut(s)	27, 135, 278, 332, 410, 552, 758, 776
BspCNI	CTCAG	3 cut(s)	415, 684, 824
BspDI	ATCGAT	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	462
BspHI	TCATGA	2 cut(s)	615, 937
BspLI	GGNNCC	2 cut(s)	82, 974
BspMI	ACCTGC	2 cut(s)	233, 505
BspPI	GGATC	6 cut(s)	63, 139, 149, 366, 430, 485
BspQI	GCTCTTC	2 cut(s)	344, 701
BsrDI	GCAATG	2 cut(s)	635, 718
BsrGI	TGTACA	1 cut(s)	849
BssECI	CCNNGG	9 cut(s)	127, 231, 299, 390, 491, 547, 572, 968, 976
BssNI	GRCGYC	4 cut(s)	321, 384, 472, 789
BssSI	CACGAG	2 cut(s)	161, 305
BssT1I	CCWWGG	2 cut(s)	572, 976
Bst2BI	CACGAG	2 cut(s)	161, 305
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	1 cut(s)	854
Bst6I	CTCTTC	2 cut(s)	344, 701
BstACI	GRCGYC	4 cut(s)	321, 384, 472, 789
BstAUI	TGTACA	1 cut(s)	849
BstBAI	YACGTR	1 cut(s)	609
BstC8I	GCNNGC	5 cut(s)	184, 217, 352, 587, 883
BstDEI	CTNAG	3 cut(s)	402, 671, 811
BstDSI	CCRYGG	4 cut(s)	231, 390, 491, 547
BstF5I	GGATG	2 cut(s)	904, 934
BstHHI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 451, 585, 731, 904
BstMCI	CGRYCG	7 cut(s)	136, 328, 373, 553, 679, 759, 820
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	7 cut(s)	127, 298, 327, 396, 758, 967, 968
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	5 cut(s)	279, 332, 642, 856, 904
BstZI	CGGCCG	3 cut(s)	133, 550, 756
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	8 cut(s)	27, 135, 278, 332, 410, 552, 758, 776
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	4 cut(s)	231, 390, 491, 547
BtsCI	GGATG	2 cut(s)	904, 934
BtsI	GCAGTG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	2 cut(s)	233, 505
Cac8I	GCNNGC	5 cut(s)	184, 217, 352, 587, 883
CciI	TCATGA	2 cut(s)	615, 937
CciNI	GCGGCCGC	1 cut(s)	133
CfoI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 451, 585, 731, 904
Cfr13I	GGNCC	3 cut(s)	277, 330, 394
Cfr42I	CCGCGG	1 cut(s)	234
Cfr9I	CCCGGG	1 cut(s)	968
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	5 cut(s)	106, 208, 392, 461, 797
Csp6I	GTAC	2 cut(s)	445, 850
CviAII	CATG	4 cut(s)	616, 784, 905, 938
CviQI	GTAC	2 cut(s)	445, 850
DdeI	CTNAG	3 cut(s)	402, 671, 811
EaeI	YGGCCR	4 cut(s)	25, 133, 550, 756
EagI	CGGCCG	3 cut(s)	133, 550, 756
Eam1104I	CTCTTC	2 cut(s)	344, 701
EarI	CTCTTC	2 cut(s)	344, 701
EciI	GGCGGA	2 cut(s)	137, 273
Ecl136II	GAGCTC	2 cut(s)	166, 337
EclXI	CGGCCG	3 cut(s)	133, 550, 756
Eco130I	CCWWGG	2 cut(s)	572, 976
Eco24I	GRGCYC	3 cut(s)	168, 339, 591
Eco47I	GGWCC	1 cut(s)	394
Eco52I	CGGCCG	3 cut(s)	133, 550, 756
Eco53kI	GAGCTC	2 cut(s)	166, 337
Eco57I	CTGAAG	1 cut(s)	614
Eco72I	CACGTG	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	535, 968
EcoICRI	GAGCTC	2 cut(s)	166, 337
EcoRI	GAATTC	1 cut(s)	908
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	2 cut(s)	572, 976
EcoT38I	GRGCYC	3 cut(s)	168, 339, 591
ErhI	CCWWGG	2 cut(s)	572, 976
FaeI	CATG	4 cut(s)	619, 787, 908, 941
FaiI	YATR	6 cut(s)	617, 785, 831, 888, 906, 939
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	4 cut(s)	615, 783, 904, 937
FauI	CCCGC	3 cut(s)	578, 724, 737
FblI	GTMKAC	3 cut(s)	318, 324, 366
FokI	GGATG	2 cut(s)	911, 941
FriOI	GRGCYC	3 cut(s)	168, 339, 591
FspAI	RTGCGCAY	1 cut(s)	903
FspI	TGCGCA	1 cut(s)	903
GlaI	GCGC	9 cut(s)	97, 139, 178, 229, 349, 450, 584, 730, 903
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	8 cut(s)	27, 135, 278, 332, 410, 552, 758, 776
HgaI	GACGC	5 cut(s)	106, 208, 392, 461, 797
HhaI	GCGC	9 cut(s)	98, 140, 179, 230, 350, 451, 585, 731, 904
Hin1I	GRCGYC	4 cut(s)	321, 384, 472, 789
Hin1II	CATG	4 cut(s)	619, 787, 908, 941
Hin6I	GCGC	9 cut(s)	96, 138, 177, 228, 348, 449, 583, 729, 902
HinP1I	GCGC	9 cut(s)	96, 138, 177, 228, 348, 449, 583, 729, 902
HincII	GTYRAC	2 cut(s)	319, 325
HindII	GTYRAC	2 cut(s)	319, 325
HinfI	GANTC	6 cut(s)	191, 261, 287, 457, 556, 934
HphI	GGTGA	2 cut(s)	214, 529
Hpy166II	GTNNAC	4 cut(s)	238, 319, 325, 367
Hpy188I	TCNGA	5 cut(s)	68, 405, 477, 527, 822
Hpy188III	TCNNGA	3 cut(s)	463, 616, 938
Hpy8I	GTNNAC	4 cut(s)	238, 319, 325, 367
Hpy99I	CGWCG	7 cut(s)	10, 320, 323, 326, 386, 477, 527
HpyAV	CCTTC	3 cut(s)	73, 100, 937
HpyCH4III	ACNGT	1 cut(s)	854
HpyCH4IV	ACGT	3 cut(s)	321, 608, 794
HpyCH4V	TGCA	2 cut(s)	354, 872
HpyF3I	CTNAG	3 cut(s)	402, 671, 811
HpySE526I	ACGT	3 cut(s)	321, 608, 794
Hsp92I	GRCGYC	4 cut(s)	321, 384, 472, 789
Hsp92II	CATG	4 cut(s)	619, 787, 908, 941
HspAI	GCGC	9 cut(s)	96, 138, 177, 228, 348, 449, 583, 729, 902
Kpn2I	TCCGGA	1 cut(s)	462
KspI	CCGCGG	1 cut(s)	234
LguI	GCTCTTC	2 cut(s)	344, 701
LmnI	GCTCC	6 cut(s)	53, 86, 171, 253, 645, 972
Lsp1109I	GCAGC	5 cut(s)	279, 332, 642, 856, 904
LweI	GCATC	3 cut(s)	164, 889, 912
MaeII	ACGT	3 cut(s)	321, 608, 794
MaeIII	GTNAC	2 cut(s)	220, 779
MboII	GAAGA	5 cut(s)	331, 620, 715, 718, 904
MhlI	GDGCHC	4 cut(s)	168, 306, 339, 591
MluCI	AATT	3 cut(s)	595, 874, 908
MlyI	GAGTC	4 cut(s)	200, 255, 296, 550
MmeI	TCCRAC	2 cut(s)	455, 505
MroI	TCCGGA	1 cut(s)	462
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	1 cut(s)	982
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	2 cut(s)	233, 655
MspR9I	CCNGG	7 cut(s)	129, 300, 329, 398, 760, 969, 970
MvaI	CCWGG	1 cut(s)	398
NciI	CCSGG	6 cut(s)	129, 300, 329, 760, 969, 970
NlaIII	CATG	4 cut(s)	619, 787, 908, 941
NlaIV	GGNNCC	2 cut(s)	82, 974
NmeAIII	GCCGAG	2 cut(s)	310, 358
NmuCI	GTSAC	2 cut(s)	220, 779
NotI	GCGGCCGC	1 cut(s)	133
NsbI	TGCGCA	1 cut(s)	903
PaeR7I	CTCGAG	1 cut(s)	535
PagI	TCATGA	2 cut(s)	615, 937
PaqCI	CACCTGC	2 cut(s)	233, 505
PciSI	GCTCTTC	2 cut(s)	344, 701
PcsI	WCGNNNNNNNCGW	4 cut(s)	312, 318, 330, 387
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	457, 934
Ple19I	CGATCG	2 cut(s)	679, 820
PleI	GAGTC	4 cut(s)	199, 255, 295, 550
PmaCI	CACGTG	1 cut(s)	609
PmlI	CACGTG	1 cut(s)	609
PpsI	GAGTC	4 cut(s)	199, 255, 295, 550
Ppu21I	YACGTR	1 cut(s)	609
Psp124BI	GAGCTC	2 cut(s)	168, 339
Psp6I	CCWGG	1 cut(s)	396
PspCI	CACGTG	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	2 cut(s)	82, 974
PspPI	GGNCC	3 cut(s)	277, 330, 394
PspXI	VCTCGAGB	1 cut(s)	535
PvuI	CGATCG	2 cut(s)	679, 820
RsaI	GTAC	2 cut(s)	446, 851
RsaNI	GTAC	2 cut(s)	445, 850
RseI	CAYNNNNRTG	1 cut(s)	920
SacI	GAGCTC	2 cut(s)	168, 339
SacII	CCGCGG	1 cut(s)	234
SalI	GTCGAC	2 cut(s)	317, 323
SapI	GCTCTTC	2 cut(s)	344, 701
SaqAI	TTAA	1 cut(s)	982
Sau96I	GGNCC	3 cut(s)	277, 330, 394
SchI	GAGTC	4 cut(s)	200, 255, 296, 550
ScrFI	CCNGG	7 cut(s)	129, 300, 329, 398, 760, 969, 970
SduI	GDGCHC	4 cut(s)	168, 306, 339, 591
SfaNI	GCATC	3 cut(s)	164, 889, 912
Sfr274I	CTCGAG	1 cut(s)	535
Sfr303I	CCGCGG	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	234
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	1 cut(s)	394
SlaI	CTCGAG	1 cut(s)	535
SmaI	CCCGGG	1 cut(s)	970
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	535
SmoI	CTYRAG	1 cut(s)	535
Sse9I	AATT	3 cut(s)	595, 874, 908
SstI	GAGCTC	2 cut(s)	168, 339
StyD4I	CCNGG	7 cut(s)	127, 298, 327, 396, 758, 967, 968
StyI	CCWWGG	2 cut(s)	572, 976
TaaI	ACNGT	1 cut(s)	854
TaiI	ACGT	3 cut(s)	324, 611, 797
TaqI	TCGA	8 cut(s)	8, 143, 318, 324, 381, 480, 536, 920
TasI	AATT	3 cut(s)	595, 874, 908
TatI	WGTACW	1 cut(s)	849
TfiI	GAWTC	2 cut(s)	457, 934
Tru1I	TTAA	1 cut(s)	982
Tru9I	TTAA	1 cut(s)	982
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	2 cut(s)	220, 779
TseI	GCWGC	5 cut(s)	292, 345, 655, 869, 892
Tsp45I	GTSAC	2 cut(s)	220, 779
TspDTI	ATGAA	5 cut(s)	604, 632, 904, 921, 926
TspMI	CCCGGG	1 cut(s)	968
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	2 cut(s)	874, 908
XhoI	CTCGAG	1 cut(s)	535
XmaI	CCCGGG	1 cut(s)	968
XmiI	GTMKAC	3 cut(s)	318, 324, 366
XmnI	GAANNNNTTC	1 cut(s)	665
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.