Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009945

Physical Location & Seq

Genomic Coordinates Reverse (-)

90429995 .. 90433696

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00153670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1941 bp

ATGACCCTTATGCTCTTCAAGCATAGGGTTGCCACCACCACCACCAATCTCACCCCACTCTCCACCACCACGATCGCCGTCCATGTCGTCGATGACCAAGATCAACGGCCACGCTCTACCCCAGCCCTGCTCTCACCTCGCCGCCTTCCGATCCAAAAACGGCTCCAAACCCTTCCGCGCCTTACAGGACTGCCTCCGCGTCAAGCCCCCGGCGGCCGCGCCTCGATCCGCCGCGATCCCCACGAGCTCCCCCGATGCGCCGCCTGCGGCGAGTCAGCTCACTCGCGGCTCTACGCCTGCGTCACCTGCGCCGCGGTTCACTGCCACGCCCCCTCCGGCGGACTCTCCCACGCGGCGGCTCACGCCGAGTCGCTGCCTCCGGGGCACGAGATCGCCGTCGACGTCGACCGGGCCGAGCTCTTCTGCTGCGCGTGCAGGGATCAAGTCTACGACCGCGACTTCGACGCCGCCGTGGTCCTGGCTCAGACCGCCACGTCCACCACAGCCTCCTCCGCGATCCAGCAGTACGCGCCGGAGAATCTCCGGAAACGGCGCCGGATCGATTACAAGCCGTGGTCGCCGGATTTCAGAGAGCAGGTGATCGTCGGAAAAAACTCGAGCCTCCTACACGGCCGGACTCCCTCCGATTTGCCTTGGGGTTTGCGCGGGCTCAACAATTTGGGGAACACGTGCTTCATGAACTCGGTTCTTCAGGCATTGCTCCACACGCCGCCGTTGCGGAACTACTTCCTCAGCGATCGGCACAACCGCTACTTTTGCCAGAAGAAGAGCAATGCCGATAAGAAAAGCGCGGGTAATAGTGGCGGGAACACGGCGGCTGTGTCTGTGTGCTTGGCCTGTGACATGGACGCCACGTTTTCGGCGGTTTTCTCAGGCGATCGGAAGCCTTATAGTCCAGCCAAGTTCTTGTACAGTTGGTGGCAATACGCTGCAAATTTGGCGAGCTATGAGCAGCAGGATGCGCATGAGTTCTTCATTTCGATGCTGGATGGGATTCATGAGAAGGTGGAAAAGGAGGGGAGGAAACCCGGGAGCCAAGGGTGTGAGTCTAGGTTCCTTGCTTTTGCCCTAGAAGTTGACAAGTGCTCACAGTTTAGGGCTAATATTCACCCTCTGCCTGCTGGCTTGATGGCGTTATCCGCTTCACTCCATGCAGGCACTGGAGATTGTTGTGTGGCTCATAGAGTTTTTTCTGGCATCTTGCGATCTGATGTTATGTGTATGGCTTGTGGTTTTACGTCTACAACATATGATCCATGCGTAGACATCTCACTGGATTTGGAACCAGGTTCTGCAAAGACGATGTCCACAAAGTCAAATCATTCTTGCAATGGCAATGCAGATTGCATGAATTCTGGCCAAAACTGTGGCACATCTACCCTTGTGGGATGCCTGGATCGTTTTACAAGACCTGAGAGATTGGGCTCTGACCAGAAATTTTTTTGCCAGCAGTGTCAGGTGAGACAAGAGTCTCTCAAGCAAATGTCCATTAGGAAGCTTCCTTTAGTTTCTTGCTTCCATATCAAACGATTTGAGCATTCTTCAATTCGAAAGATGTCAAGGAAGGTGGACCGTTATCTGCAGTTTCCATTTTCGTTAGACATGGCACCATATCTTTCGTCTTCCATCTTAAGGAATCGATTTGGGAATAGGATTCTTCCTTTTGATGGGGATGAGCCAGAAGCTCCAAATGAGTTATGCTCAGAATTTGAGTTGTTTGCTGTTGTAACTCACACAGGCAAGCTGGATGCTGGCCATTACGTGACTTACTTGCGATTAAGTAATCATTGGTACAAGTGTGATGATGCTTGGATCACACAAGTTAACGAGGACATTGTGAGGGCTGCACAAGGCTACATGATGTTTTATGTACAGAAAATGCTATTTTACAAAGCAAGTGAGAGACAGGGTTCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH zf-UBP

Protein Analysis

646

Amino Acids

71.92

Weight (kDa)

8.67

Isoelectric Point (pI)

47.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-UBP	PF02148	86 - 153	9.2e-10	Zn-finger in ubiquitin-hydrolases and other protein
UCH	PF00443	222 - 630	1.1e-57	Ubiquitin carboxyl-terminal hydrolase
UCH_1	PF13423	223 - 609	4.2e-15	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009945)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02230
malus_domestica	MD02G1020200.v1.1 MD15G1163000.v1.1
prunus_persica	Prupe.7G251600_v2.0.a1
pyrus_communis	pycom15g14660
rosa_chinensis	RchiOBHm_Chr2g0087351 RchiOBHm_Chr2g0087361
rosa_laevigata	RLG00000015859
rosa_multiflora	Rmu_co8225392.1_g000001 Rmu_co8488985.1_g000001 Rmu_sc0003367.1_g000026 Rmu_sc0006064.1_g000003 Rmu_sc0033647.1_g000002
rosa_roxburghii	Rroxscaffold_2G00153670
rosa_rugosa	Rorug01G0474400
rosa_samantha	Rh2AG028000 Rh2AG028100 Rh2BG027500 Rh2CG028300 Rh2DG028100
rosa_wichuraiana	Rw2G002220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	314, 586
AasI	GACNNNNNNGTC	1 cut(s)	493
AatII	GACGTC	1 cut(s)	405
Acc16I	TGCGCA	1 cut(s)	984
Acc36I	ACCTGC	2 cut(s)	314, 586
AccB1I	GGYRCC	2 cut(s)	552, 1627
AccI	GTMKAC	5 cut(s)	399, 405, 447, 1262, 1284
AccIII	TCCGGA	1 cut(s)	543
AclWI	GGATC	9 cut(s)	145, 220, 230, 447, 511, 566, 1268, 1425, 1841
AcoI	YGGCCR	5 cut(s)	107, 214, 631, 1378, 1774
AcsI	RAATTY	4 cut(s)	955, 1372, 1457, 1727
AcuI	CTGAAG	1 cut(s)	695
AcvI	CACGTG	1 cut(s)	690
AcyI	GRCGYC	4 cut(s)	402, 465, 553, 870
AfaI	GTAC	4 cut(s)	527, 932, 1814, 1893
AfiI	CCNNNNNNNGG	4 cut(s)	338, 355, 1653, 1688
AflII	CTTAAG	1 cut(s)	1651
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	2 cut(s)	19, 1566
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	3 cut(s)	477, 1306, 1413
AluBI	AGCT	7 cut(s)	247, 278, 418, 966, 1519, 1706, 1765
AluI	AGCT	7 cut(s)	247, 278, 418, 966, 1519, 1706, 1765
Alw21I	GWGCWC	3 cut(s)	249, 420, 1109
Alw26I	GTCTC	3 cut(s)	1477, 1497, 1918
AlwI	GGATC	9 cut(s)	145, 220, 230, 447, 511, 566, 1268, 1425, 1841
AlwNI	CAGNNNCTG	2 cut(s)	1181, 1313
Ama87I	CYCGRG	2 cut(s)	616, 1049
Aor13HI	TCCGGA	1 cut(s)	543
AoxI	GGCC	7 cut(s)	107, 214, 411, 631, 855, 1378, 1774
ApeKI	GCWGC	5 cut(s)	373, 426, 950, 973, 1865
ApoI	RAATTY	4 cut(s)	955, 1372, 1457, 1727
ArsI	GACNNNNNNTTYG	4 cut(s)	443, 475, 1310, 1342
Asp700I	GAANNNNTTC	1 cut(s)	746
AspS9I	GGNCC	3 cut(s)	411, 475, 1591
AsuC2I	CCSGG	5 cut(s)	210, 381, 410, 1050, 1051
AsuHPI	GGTGA	6 cut(s)	43, 126, 295, 610, 1121, 1492
AsuII	TTCGAA	1 cut(s)	1570
AvaI	CYCGRG	2 cut(s)	616, 1049
AvaII	GGWCC	2 cut(s)	475, 1591
BaeGI	GKGCMC	1 cut(s)	387
BaeI	ACNNNNGTAYC	2 cut(s)	1804, 1837
BalI	TGGCCA	2 cut(s)	1380, 1776
BanI	GGYRCC	2 cut(s)	552, 1627
BanII	GRGCYC	4 cut(s)	249, 420, 672, 1448
BauI	CACGAG	2 cut(s)	242, 386
BbrPI	CACGTG	1 cut(s)	690
BbsI	GAAGAC	1 cut(s)	1635
Bbv12I	GWGCWC	3 cut(s)	249, 420, 1109
BbvCI	CCTCAGC	1 cut(s)	752
BbvI	GCAGC	5 cut(s)	360, 413, 937, 985, 1852
BccI	CCATC	4 cut(s)	1004, 1144, 1655, 1682
BciT130I	CCWGG	3 cut(s)	479, 1308, 1415
BcnI	CCSGG	5 cut(s)	210, 381, 410, 1050, 1051
BcoDI	GTCTC	3 cut(s)	1477, 1497, 1918
BfaI	CTAG	2 cut(s)	1071, 1091
BfmI	CTRYAG	1 cut(s)	1601
BfoI	RGCGCY	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	1651
BfuAI	ACCTGC	2 cut(s)	314, 586
BglI	GCCNNNNNGGC	1 cut(s)	382
Bme1390I	CCNGG	8 cut(s)	210, 381, 410, 479, 1050, 1051, 1308, 1415
Bme18I	GGWCC	2 cut(s)	475, 1591
BmeT110I	CYCGRG	2 cut(s)	616, 1049
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	3 cut(s)	411, 475, 1591
BmiI	GGNNCC	6 cut(s)	164, 554, 1055, 1076, 1305, 1629
BmrFI	CCNGG	8 cut(s)	210, 381, 410, 479, 1050, 1051, 1308, 1415
BmsI	GCATC	7 cut(s)	245, 970, 993, 1227, 1400, 1759, 1816
BoxI	GACNNNNGTC	1 cut(s)	1489
BpiI	GAAGAC	1 cut(s)	1635
BplI	GAGNNNNNCTC	2 cut(s)	1706, 1738
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	1 cut(s)	752
Bpu14I	TTCGAA	1 cut(s)	1570
BpuEI	CTTGAG	1 cut(s)	1481
BpuMI	CCSGG	5 cut(s)	210, 381, 410, 1050, 1051
Bsa29I	ATCGAT	2 cut(s)	561, 1660
BsaAI	YACGTR	2 cut(s)	690, 1783
BsaHI	GRCGYC	4 cut(s)	402, 465, 553, 870
BsaJI	CCNNGG	8 cut(s)	208, 312, 380, 471, 572, 653, 1049, 1057
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 355, 1653, 1688
Bse1I	ACTGG	2 cut(s)	1186, 1299
Bse3DI	GCAATG	4 cut(s)	716, 799, 1357, 1363
BseAI	TCCGGA	1 cut(s)	543
BseBI	CCWGG	3 cut(s)	479, 1308, 1415
BseCI	ATCGAT	2 cut(s)	561, 1660
BseDI	CCNNGG	8 cut(s)	208, 312, 380, 471, 572, 653, 1049, 1057
BseGI	GGATG	5 cut(s)	985, 1015, 1415, 1699, 1774
BseLI	CCNNNNNNNGG	4 cut(s)	338, 355, 1653, 1688
BseMI	GCAATG	4 cut(s)	716, 799, 1357, 1363
BseMII	CTCAG	5 cut(s)	497, 766, 906, 1425, 1737
BseNI	ACTGG	2 cut(s)	1186, 1299
BseRI	GAGGAG	1 cut(s)	499
BseSI	GKGCMC	1 cut(s)	387
BseX3I	CGGCCG	2 cut(s)	214, 631
BseXI	GCAGC	5 cut(s)	360, 413, 937, 985, 1852
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	454, 1851
Bsh1285I	CGRYCG	7 cut(s)	75, 217, 409, 454, 634, 760, 901
BshFI	GGCC	7 cut(s)	109, 216, 413, 633, 857, 1380, 1776
BshNI	GGYRCC	2 cut(s)	552, 1627
BshVI	ATCGAT	2 cut(s)	561, 1660
BsiEI	CGRYCG	7 cut(s)	75, 217, 409, 454, 634, 760, 901
BsiHKAI	GWGCWC	3 cut(s)	249, 420, 1109
BsiHKCI	CYCGRG	2 cut(s)	616, 1049
BslI	CCNNNNNNNGG	4 cut(s)	338, 355, 1653, 1688
BsmAI	GTCTC	3 cut(s)	1477, 1497, 1918
BsmI	GAATGC	1 cut(s)	1558
BsnI	GGCC	7 cut(s)	109, 216, 413, 633, 857, 1380, 1776
BsoBI	CYCGRG	2 cut(s)	616, 1049
Bsp119I	TTCGAA	1 cut(s)	1570
Bsp1286I	GDGCHC	6 cut(s)	249, 387, 420, 672, 1109, 1448
Bsp13I	TCCGGA	1 cut(s)	543
Bsp1407I	TGTACA	2 cut(s)	930, 1891
BspANI	GGCC	7 cut(s)	109, 216, 413, 633, 857, 1380, 1776
BspCNI	CTCAG	5 cut(s)	496, 765, 905, 1426, 1736
BspDI	ATCGAT	2 cut(s)	561, 1660
BspEI	TCCGGA	1 cut(s)	543
BspHI	TCATGA	2 cut(s)	696, 1018
BspLI	GGNNCC	6 cut(s)	164, 554, 1055, 1076, 1305, 1629
BspMAI	CTGCAG	1 cut(s)	1605
BspMI	ACCTGC	2 cut(s)	314, 586
BspPI	GGATC	9 cut(s)	145, 220, 230, 447, 511, 566, 1268, 1425, 1841
BspQI	GCTCTTC	3 cut(s)	20, 425, 782
BspT104I	TTCGAA	1 cut(s)	1570
BspT107I	GGYRCC	2 cut(s)	552, 1627
BspTI	CTTAAG	1 cut(s)	1651
BsrDI	GCAATG	4 cut(s)	716, 799, 1357, 1363
BsrGI	TGTACA	2 cut(s)	930, 1891
BsrI	ACTGG	2 cut(s)	1186, 1299
BssECI	CCNNGG	8 cut(s)	208, 312, 380, 471, 572, 653, 1049, 1057
BssNI	GRCGYC	4 cut(s)	402, 465, 553, 870
BssSI	CACGAG	2 cut(s)	242, 386
BssT1I	CCWWGG	2 cut(s)	653, 1057
Bst2BI	CACGAG	2 cut(s)	242, 386
Bst2UI	CCWGG	3 cut(s)	479, 1308, 1415
Bst4CI	ACNGT	4 cut(s)	935, 1113, 1388, 1595
Bst6I	CTCTTC	3 cut(s)	20, 425, 782
BstACI	GRCGYC	4 cut(s)	402, 465, 553, 870
BstAFI	CTTAAG	1 cut(s)	1651
BstAUI	TGTACA	2 cut(s)	930, 1891
BstBAI	YACGTR	2 cut(s)	690, 1783
BstBI	TTCGAA	1 cut(s)	1570
BstDEI	CTNAG	5 cut(s)	483, 752, 892, 1434, 1723
BstDSI	CCRYGG	3 cut(s)	312, 471, 572
BstF5I	GGATG	5 cut(s)	985, 1015, 1415, 1699, 1774
BstH2I	RGCGCY	1 cut(s)	556
BstMAI	GTCTC	3 cut(s)	1477, 1497, 1918
BstMCI	CGRYCG	7 cut(s)	75, 217, 409, 454, 634, 760, 901
BstNI	CCWGG	3 cut(s)	479, 1308, 1415
BstPAI	GACNNNNGTC	1 cut(s)	1489
BstSCI	CCNGG	8 cut(s)	208, 379, 408, 477, 1048, 1049, 1306, 1413
BstSFI	CTRYAG	1 cut(s)	1601
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	5 cut(s)	360, 413, 937, 985, 1852
BstV2I	GAAGAC	1 cut(s)	1635
BstXI	CCANNNNNNTGG	1 cut(s)	1388
BstZI	CGGCCG	2 cut(s)	214, 631
Bsu15I	ATCGAT	2 cut(s)	561, 1660
BsuRI	GGCC	7 cut(s)	109, 216, 413, 633, 857, 1380, 1776
BsuTUI	ATCGAT	2 cut(s)	561, 1660
BtgI	CCRYGG	3 cut(s)	312, 471, 572
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	5 cut(s)	985, 1015, 1415, 1699, 1774
BtsI	GCAGTG	2 cut(s)	319, 1478
BtsIMutI	CAGTG	4 cut(s)	319, 1179, 1292, 1478
BveI	ACCTGC	2 cut(s)	314, 586
CaiI	CAGNNNCTG	2 cut(s)	1181, 1313
CciI	TCATGA	2 cut(s)	696, 1018
CciNI	GCGGCCGC	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	411, 475, 1591
Cfr42I	CCGCGG	1 cut(s)	315
Cfr9I	CCCGGG	1 cut(s)	1049
ClaI	ATCGAT	2 cut(s)	561, 1660
CseI	GACGC	4 cut(s)	188, 289, 473, 878
CsiI	ACCWGGT	1 cut(s)	1306
Csp6I	GTAC	4 cut(s)	526, 931, 1813, 1892
CspCI	CAANNNNNGTGG	2 cut(s)	1569, 1604
CviQI	GTAC	4 cut(s)	526, 931, 1813, 1892
DdeI	CTNAG	5 cut(s)	483, 752, 892, 1434, 1723
DinI	GGCGCC	1 cut(s)	554
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
EaeI	YGGCCR	5 cut(s)	107, 214, 631, 1378, 1774
EagI	CGGCCG	2 cut(s)	214, 631
Eam1104I	CTCTTC	3 cut(s)	20, 425, 782
EarI	CTCTTC	3 cut(s)	20, 425, 782
EciI	GGCGGA	2 cut(s)	218, 354
Ecl136II	GAGCTC	2 cut(s)	247, 418
EclXI	CGGCCG	2 cut(s)	214, 631
Eco130I	CCWWGG	2 cut(s)	653, 1057
Eco24I	GRGCYC	4 cut(s)	249, 420, 672, 1448
Eco47I	GGWCC	2 cut(s)	475, 1591
Eco52I	CGGCCG	2 cut(s)	214, 631
Eco53kI	GAGCTC	2 cut(s)	247, 418
Eco57I	CTGAAG	1 cut(s)	695
Eco72I	CACGTG	1 cut(s)	690
Eco88I	CYCGRG	2 cut(s)	616, 1049
EcoICRI	GAGCTC	2 cut(s)	247, 418
EcoRI	GAATTC	1 cut(s)	1372
EcoRII	CCWGG	3 cut(s)	477, 1306, 1413
EcoT14I	CCWWGG	2 cut(s)	653, 1057
EcoT38I	GRGCYC	4 cut(s)	249, 420, 672, 1448
EgeI	GGCGCC	1 cut(s)	554
EheI	GGCGCC	1 cut(s)	554
ErhI	CCWWGG	2 cut(s)	653, 1057
FauI	CCCGC	3 cut(s)	659, 805, 818
FauNDI	CATATG	1 cut(s)	1270
FblI	GTMKAC	5 cut(s)	399, 405, 447, 1262, 1284
FokI	GGATG	5 cut(s)	992, 1022, 1422, 1706, 1781
FriOI	GRGCYC	4 cut(s)	249, 420, 672, 1448
FspAI	RTGCGCAY	1 cut(s)	984
FspBI	CTAG	2 cut(s)	1071, 1091
FspI	TGCGCA	1 cut(s)	984
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	1203
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	7 cut(s)	109, 216, 413, 633, 857, 1380, 1776
HgaI	GACGC	4 cut(s)	188, 289, 473, 878
Hin1I	GRCGYC	4 cut(s)	402, 465, 553, 870
HincII	GTYRAC	4 cut(s)	400, 406, 1099, 1846
HindII	GTYRAC	4 cut(s)	400, 406, 1099, 1846
HindIII	AAGCTT	1 cut(s)	1517
HpaI	GTTAAC	1 cut(s)	1846
HphI	GGTGA	6 cut(s)	43, 126, 295, 610, 1121, 1492
Hpy188I	TCNGA	9 cut(s)	150, 486, 590, 608, 646, 903, 1231, 1450, 1726
Hpy188III	TCNNGA	3 cut(s)	544, 697, 1019
Hpy99I	CGWCG	6 cut(s)	92, 401, 404, 407, 467, 608
HpyAV	CCTTC	4 cut(s)	155, 182, 1018, 1579
HpyCH4III	ACNGT	4 cut(s)	935, 1113, 1388, 1595
HpyCH4IV	ACGT	6 cut(s)	402, 494, 689, 875, 1259, 1782
HpyF3I	CTNAG	5 cut(s)	483, 752, 892, 1434, 1723
HpySE526I	ACGT	6 cut(s)	402, 494, 689, 875, 1259, 1782
Hsp92I	GRCGYC	4 cut(s)	402, 465, 553, 870
KasI	GGCGCC	1 cut(s)	552
Kpn2I	TCCGGA	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	1846
KspI	CCGCGG	1 cut(s)	315
LguI	GCTCTTC	3 cut(s)	20, 425, 782
LmnI	GCTCC	5 cut(s)	168, 252, 726, 1053, 1711
Lsp1109I	GCAGC	5 cut(s)	360, 413, 937, 985, 1852
LweI	GCATC	7 cut(s)	245, 970, 993, 1227, 1400, 1759, 1816
MabI	ACCWGGT	1 cut(s)	1306
MaeI	CTAG	2 cut(s)	1071, 1091
MaeII	ACGT	6 cut(s)	402, 494, 689, 875, 1259, 1782
MaeIII	GTNAC	4 cut(s)	301, 860, 1747, 1783
MboII	GAAGA	9 cut(s)	7, 412, 701, 796, 799, 985, 1554, 1635, 1670
MhlI	GDGCHC	6 cut(s)	249, 387, 420, 672, 1109, 1448
MlsI	TGGCCA	2 cut(s)	1380, 1776
MluCI	AATT	6 cut(s)	676, 955, 1372, 1457, 1566, 1727
MluNI	TGGCCA	2 cut(s)	1380, 1776
Mly113I	GGCGCC	1 cut(s)	553
MlyI	GAGTC	6 cut(s)	281, 336, 377, 631, 1076, 1499
MmeI	TCCRAC	1 cut(s)	586
Mox20I	TGGCCA	2 cut(s)	1380, 1776
MroI	TCCGGA	1 cut(s)	543
MroXI	GAANNNNTTC	1 cut(s)	746
MscI	TGGCCA	2 cut(s)	1380, 1776
MseI	TTAA	3 cut(s)	1652, 1799, 1845
MslI	CAYNNNNRTG	1 cut(s)	1001
Msp20I	TGGCCA	2 cut(s)	1380, 1776
MspA1I	CMGCKG	1 cut(s)	314
MspCI	CTTAAG	1 cut(s)	1651
MspR9I	CCNGG	8 cut(s)	210, 381, 410, 479, 1050, 1051, 1308, 1415
Mva1269I	GAATGC	1 cut(s)	1558
MvaI	CCWGG	3 cut(s)	479, 1308, 1415
NarI	GGCGCC	1 cut(s)	553
NciI	CCSGG	5 cut(s)	210, 381, 410, 1050, 1051
NdeI	CATATG	1 cut(s)	1270
NlaIV	GGNNCC	6 cut(s)	164, 554, 1055, 1076, 1305, 1629
NmeAIII	GCCGAG	2 cut(s)	391, 439
NmuCI	GTSAC	3 cut(s)	301, 860, 1783
NotI	GCGGCCGC	1 cut(s)	214
NsbI	TGCGCA	1 cut(s)	984
NspV	TTCGAA	1 cut(s)	1570
PaeR7I	CTCGAG	1 cut(s)	616
PagI	TCATGA	2 cut(s)	696, 1018
PaqCI	CACCTGC	2 cut(s)	314, 586
PciSI	GCTCTTC	3 cut(s)	20, 425, 782
PcsI	WCGNNNNNNNCGW	4 cut(s)	393, 399, 411, 468
PctI	GAATGC	1 cut(s)	1558
PdmI	GAANNNNTTC	1 cut(s)	746
PfeI	GAWTC	4 cut(s)	538, 1015, 1657, 1675
PflFI	GACNNNGTC	1 cut(s)	1324
Ple19I	CGATCG	3 cut(s)	75, 760, 901
PleI	GAGTC	6 cut(s)	280, 336, 376, 631, 1075, 1498
PluTI	GGCGCC	1 cut(s)	556
PmaCI	CACGTG	1 cut(s)	690
PmlI	CACGTG	1 cut(s)	690
PpsI	GAGTC	6 cut(s)	280, 336, 376, 631, 1075, 1498
Ppu21I	YACGTR	2 cut(s)	690, 1783
PshAI	GACNNNNGTC	1 cut(s)	1489
Psp124BI	GAGCTC	2 cut(s)	249, 420
Psp6I	CCWGG	3 cut(s)	477, 1306, 1413
PspCI	CACGTG	1 cut(s)	690
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	3 cut(s)	477, 1306, 1413
PspN4I	GGNNCC	6 cut(s)	164, 554, 1055, 1076, 1305, 1629
PspPI	GGNCC	3 cut(s)	411, 475, 1591
PspXI	VCTCGAGB	1 cut(s)	616
PstI	CTGCAG	1 cut(s)	1605
PstNI	CAGNNNCTG	2 cut(s)	1181, 1313
PsyI	GACNNNGTC	1 cut(s)	1324
PvuI	CGATCG	3 cut(s)	75, 760, 901
RsaI	GTAC	4 cut(s)	527, 932, 1814, 1893
RsaNI	GTAC	4 cut(s)	526, 931, 1813, 1892
RseI	CAYNNNNRTG	1 cut(s)	1001
SacI	GAGCTC	2 cut(s)	249, 420
SacII	CCGCGG	1 cut(s)	315
SalI	GTCGAC	2 cut(s)	398, 404
SapI	GCTCTTC	3 cut(s)	20, 425, 782
SaqAI	TTAA	3 cut(s)	1652, 1799, 1845
Sau96I	GGNCC	3 cut(s)	411, 475, 1591
SchI	GAGTC	6 cut(s)	281, 336, 377, 631, 1076, 1499
ScrFI	CCNGG	8 cut(s)	210, 381, 410, 479, 1050, 1051, 1308, 1415
SduI	GDGCHC	6 cut(s)	249, 387, 420, 672, 1109, 1448
SexAI	ACCWGGT	1 cut(s)	1306
SfaNI	GCATC	7 cut(s)	245, 970, 993, 1227, 1400, 1759, 1816
SfcI	CTRYAG	1 cut(s)	1601
SfoI	GGCGCC	1 cut(s)	554
Sfr274I	CTCGAG	1 cut(s)	616
Sfr303I	CCGCGG	1 cut(s)	315
SfuI	TTCGAA	1 cut(s)	1570
SgrBI	CCGCGG	1 cut(s)	315
SgrDI	CGTCGACG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	475, 1591
SlaI	CTCGAG	1 cut(s)	616
SmaI	CCCGGG	1 cut(s)	1051
SmiMI	CAYNNNNRTG	1 cut(s)	1001
SmlI	CTYRAG	3 cut(s)	616, 1496, 1651
SmoI	CTYRAG	3 cut(s)	616, 1496, 1651
Sse9I	AATT	6 cut(s)	676, 955, 1372, 1457, 1566, 1727
SspDI	GGCGCC	1 cut(s)	552
SspI	AATATT	1 cut(s)	1126
SspMI	CTAG	2 cut(s)	1071, 1091
SstI	GAGCTC	2 cut(s)	249, 420
StyD4I	CCNGG	8 cut(s)	208, 379, 408, 477, 1048, 1049, 1306, 1413
StyI	CCWWGG	2 cut(s)	653, 1057
TaaI	ACNGT	4 cut(s)	935, 1113, 1388, 1595
TaiI	ACGT	6 cut(s)	405, 497, 692, 878, 1262, 1785
TasI	AATT	6 cut(s)	676, 955, 1372, 1457, 1566, 1727
TatI	WGTACW	2 cut(s)	930, 1891
TfiI	GAWTC	4 cut(s)	538, 1015, 1657, 1675
Tru1I	TTAA	3 cut(s)	1652, 1799, 1845
Tru9I	TTAA	3 cut(s)	1652, 1799, 1845
TscAI	CASTG	4 cut(s)	326, 1186, 1299, 1478
TseFI	GTSAC	3 cut(s)	301, 860, 1783
TseI	GCWGC	5 cut(s)	373, 426, 950, 973, 1865
Tsp45I	GTSAC	3 cut(s)	301, 860, 1783
TspDTI	ATGAA	5 cut(s)	685, 713, 985, 1007, 1385
TspMI	CCCGGG	1 cut(s)	1049
TspRI	CASTG	4 cut(s)	326, 1186, 1299, 1478
Tth111I	GACNNNGTC	1 cut(s)	1324
Vha464I	CTTAAG	1 cut(s)	1651
VpaK11BI	GGWCC	2 cut(s)	475, 1591
XapI	RAATTY	4 cut(s)	955, 1372, 1457, 1727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1178
XhoI	CTCGAG	1 cut(s)	616
XmaI	CCCGGG	1 cut(s)	1049
XmiI	GTMKAC	5 cut(s)	399, 405, 447, 1262, 1284
XmnI	GAANNNNTTC	1 cut(s)	746
XspI	CTAG	2 cut(s)	1071, 1091
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.