Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013547

Physical Location & Seq

Genomic Coordinates Reverse (-)

18732709 .. 18734838

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G194300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCCGGTGACCATACGTCGCCTTCTCACCGCCACTCTCAGAACCCCGAATATTCTCTCTCATTCACGCCCAGCTCTCTCCTCTCGCCACGTAGTCCCCCAACCCTCATTTCCGCTCACCCACCCGTCACTCTACCACCGCTTCCTGTCCTCCTCATCCACCGAAAACCCTAACCCTCCAAACCCGCTCAGAACCCGAACCCCACTAGAAAAGCAATTCGAGACATGGGTCCATAAGCTCAAACCCGGGTTCGGGCCACTCGAAGTCAAGGAGGCCCTGCAAGCCCAATCGGACCCGGATCTCGCCCTCGACATTTTCCGGTGGACTGCCCAGCAGCGCAACTACAAGCACAACCAGGCTACCTACCTCACCATGGTCAAAATCCTAATCGACGGCAAGAGGTTCCGGCAGGCCGAAACCCTAGTGGAAGAGGTAATCGCCGGAGCTTGTGAAATTAGCGTGCCTCTTTATAATTCCATGATTCGATTTTGCTGCGGAAGAAAGATGCTTTTCAATCGTGCGTTTGATATTTATAAGAAAATGTTGAACTCTGAGGATTGTAAACCCAATCTTGAAACTTATGCTCTGCTATTGAACTCATTGCTTAGGAGGTTTAATAATATGCATGTGTGCTTTGTGTACCTGCGTGCGGTGCGGTCTTTATCGAAGCAAATGAAGGCGTGTGGAGTGATTCCTGATACTTTTGTGTTGAATATGATCATAAAGGCTTATTCAAAGTGTTTGGAAGTTGAAGATGCAATGCAGGTTTTTCGCGAAATGGGATTGTATGGGTGCGAGCCGAATGCGTATACTTATGGTTACATTGCTAAAGGGTTGTGTGAGAAGGGGAGGGTAGGTCAGGGTTTAGGGTTTTATAAGGAGATGAGAGGAAAAGGATTGGTGCCTACCAGTAGTACATATATGATTGTGATTTGCAGTCTCGCTATGGAACGGAGATATGATGATGCGAGTGAGGTTGTGCTTGATATGTTGAGTAATTCCATGTCTCCTGATTTGTTAACTTATAAAACGTTATTGGAAGGATTGTGCCGGGATGGGAAGGGTTCCGAGGCGTTTGATCTACTAGAGGATTTCAGGAAAGGGGATAGTAAGATGGGTGAAAAAACTTACAAGACTTTGTTAAATGCATTGCATTTTGTAAATGGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

391

Amino Acids

44.41

Weight (kDa)

9.05

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25210
fragaria_vesca	FvH4_3g25580
malus_domestica	MD05G1166500.v1.1 MD10G1156500.v1.1
prunus_persica	Prupe.8G194300_v2.0.a1
pyrus_communis	pycom05g15510 pycom10g13470
rosa_chinensis	RchiOBHm_Chr5g0046411
rosa_laevigata	RLG00000034408
rosa_multiflora	Rmu_sc0003878.1_g000050
rosa_roxburghii	Rroxscaffold_1G00034990 Rroxscaffold_7G00197530
rosa_rugosa	Rorug05G0227800
rosa_samantha	Rh5AG309000 Rh5BG317200 Rh5CG343100 Rh5DG327400
rosa_wichuraiana	Rw0G021510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	471, 534, 876, 1026
Acc36I	ACCTGC	2 cut(s)	651, 754
AccB1I	GGYRCC	1 cut(s)	901
AccBSI	CCGCTC	2 cut(s)	115, 187
AccI	GTMKAC	1 cut(s)	809
AccII	CGCG	1 cut(s)	774
AciI	CCGC	7 cut(s)	30, 113, 139, 185, 495, 650, 655
AclI	AACGTT	1 cut(s)	1031
AclWI	GGATC	1 cut(s)	306
AfaI	GTAC	2 cut(s)	641, 916
AfiI	CCNNNNNNNGG	4 cut(s)	251, 252, 373, 649
AgsI	TTSAA	7 cut(s)	514, 547, 575, 595, 712, 735, 752
AhdI	GACNNNNNGTC	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	3 cut(s)	74, 238, 446
AluI	AGCT	3 cut(s)	74, 238, 446
Alw26I	GTCTC	3 cut(s)	215, 944, 1011
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	3 cut(s)	254, 273, 411
ApeKI	GCWGC	2 cut(s)	334, 492
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	4 cut(s)	229, 254, 274, 292
AsuC2I	CCSGG	4 cut(s)	246, 247, 296, 1052
AsuHPI	GGTGA	5 cut(s)	19, 19, 109, 361, 1130
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	229, 292
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BanI	GGYRCC	1 cut(s)	901
BbvI	GCAGC	2 cut(s)	346, 479
BccI	CCATC	2 cut(s)	1049, 1108
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	6 cut(s)	474, 508, 752, 785, 786, 819
BciT130I	CCWGG	1 cut(s)	356
BclI	TGATCA	1 cut(s)	717
BcnI	CCSGG	4 cut(s)	246, 247, 296, 1052
BcoDI	GTCTC	3 cut(s)	215, 944, 1011
BfaI	CTAG	3 cut(s)	206, 422, 1085
BfuAI	ACCTGC	2 cut(s)	651, 754
BisI	GCNGC	2 cut(s)	335, 493
BlsI	GCNGC	2 cut(s)	336, 494
Bme1390I	CCNGG	5 cut(s)	246, 247, 296, 356, 1052
Bme18I	GGWCC	2 cut(s)	229, 292
BmeRI	GACNNNNNGTC	1 cut(s)	15
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	229, 254, 274, 292
BmiI	GGNNCC	5 cut(s)	230, 294, 404, 903, 1066
BmrFI	CCNGG	5 cut(s)	246, 247, 296, 356, 1052
BmsI	GCATC	3 cut(s)	495, 745, 955
BoxI	GACNNNNGTC	1 cut(s)	227
Bpu10I	CCTNAGC	1 cut(s)	605
BpuMI	CCSGG	4 cut(s)	246, 247, 296, 1052
BsaAI	YACGTR	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	245, 372, 1068
BsaWI	WCCGGW	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	841, 871
Bsc4I	CCNNNNNNNGG	4 cut(s)	251, 252, 373, 649
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	909
Bse3DI	GCAATG	4 cut(s)	599, 765, 822, 1148
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	3 cut(s)	245, 372, 1068
BseGI	GGATG	2 cut(s)	155, 1060
BseLI	CCNNNNNNNGG	4 cut(s)	251, 252, 373, 649
BseMI	GCAATG	4 cut(s)	599, 765, 822, 1148
BseMII	CTCAG	3 cut(s)	52, 202, 543
BseNI	ACTGG	1 cut(s)	909
BseRI	GAGGAG	2 cut(s)	70, 142
BseXI	GCAGC	2 cut(s)	346, 479
BseYI	CCCAGC	2 cut(s)	70, 330
Bsh1236I	CGCG	1 cut(s)	774
BshFI	GGCC	3 cut(s)	256, 275, 413
BshNI	GGYRCC	1 cut(s)	901
BsiHKCI	CYCGRG	1 cut(s)	245
BsiSI	CCGG	7 cut(s)	5, 246, 296, 319, 406, 441, 1051
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	4 cut(s)	251, 252, 373, 649
BsmAI	GTCTC	3 cut(s)	215, 944, 1011
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	3 cut(s)	256, 275, 413
BsoBI	CYCGRG	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	298, 717, 1078
Bsp19I	CCATGG	1 cut(s)	372
Bsp68I	TCGCGA	1 cut(s)	774
BspACI	CCGC	7 cut(s)	30, 113, 139, 185, 495, 650, 655
BspANI	GGCC	3 cut(s)	256, 275, 413
BspCNI	CTCAG	3 cut(s)	51, 201, 544
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	5 cut(s)	230, 294, 404, 903, 1066
BspMI	ACCTGC	2 cut(s)	651, 754
BspPI	GGATC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	901
BsrBI	CCGCTC	2 cut(s)	115, 187
BsrDI	GCAATG	4 cut(s)	599, 765, 822, 1148
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	909
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	245, 372, 1068
BssMI	GATC	3 cut(s)	298, 717, 1078
BssNAI	GTATAC	1 cut(s)	810
BssT1I	CCWWGG	1 cut(s)	372
Bst1107I	GTATAC	1 cut(s)	810
Bst2UI	CCWGG	1 cut(s)	356
Bst6I	CTCTTC	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	5 cut(s)	282, 411, 461, 648, 797
BstDEI	CTNAG	4 cut(s)	38, 188, 552, 605
BstDSI	CCRYGG	1 cut(s)	372
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	155, 1060
BstFNI	CGCG	1 cut(s)	774
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	301, 720, 1081
BstMAI	GTCTC	3 cut(s)	215, 944, 1011
BstMBI	GATC	3 cut(s)	298, 717, 1078
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 652
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	227
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	5 cut(s)	244, 245, 294, 354, 1050
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	346, 479
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BstZ17I	GTATAC	1 cut(s)	810
BsuRI	GGCC	3 cut(s)	256, 275, 413
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	155, 1060
BtuMI	TCGCGA	1 cut(s)	774
BveI	ACCTGC	2 cut(s)	651, 754
Cac8I	GCNNGC	5 cut(s)	282, 411, 461, 648, 797
CfoI	GCGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	4 cut(s)	229, 254, 274, 292
Cfr9I	CCCGGG	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	640, 915
CviAII	CATG	5 cut(s)	225, 373, 478, 626, 1003
CviQI	GTAC	2 cut(s)	640, 915
DdeI	CTNAG	4 cut(s)	38, 188, 552, 605
DpnI	GATC	3 cut(s)	300, 719, 1080
DpnII	GATC	3 cut(s)	298, 717, 1078
DriI	GACNNNNNGTC	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	423
Eam1105I	GACNNNNNGTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	229, 292
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	274
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	2 cut(s)	627, 1150
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	228, 376, 481, 629, 1006
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	5 cut(s)	224, 372, 477, 625, 1002
FauI	CCCGC	1 cut(s)	192
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	809
Fnu4HI	GCNGC	2 cut(s)	335, 493
FokI	GGATG	2 cut(s)	142, 1067
Fsp4HI	GCNGC	2 cut(s)	335, 493
FspBI	CTAG	3 cut(s)	206, 422, 1085
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	335, 493
GsaI	CCCAGC	2 cut(s)	74, 334
HaeIII	GGCC	3 cut(s)	256, 275, 413
HapII	CCGG	7 cut(s)	5, 246, 296, 319, 406, 441, 1051
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	228, 376, 481, 629, 1006
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	1020
HindII	GTYRAC	1 cut(s)	1020
HinfI	GANTC	2 cut(s)	481, 691
HpaI	GTTAAC	1 cut(s)	1020
HpaII	CCGG	7 cut(s)	5, 246, 296, 319, 406, 441, 1051
HphI	GGTGA	5 cut(s)	19, 19, 109, 361, 1130
Hpy166II	GTNNAC	5 cut(s)	324, 563, 640, 810, 1020
Hpy188I	TCNGA	5 cut(s)	41, 191, 292, 553, 1069
Hpy188III	TCNNGA	6 cut(s)	220, 572, 695, 773, 1010, 1096
Hpy8I	GTNNAC	5 cut(s)	324, 563, 640, 810, 1020
Hpy99I	CGWCG	2 cut(s)	21, 395
HpyAV	CCTTC	5 cut(s)	32, 670, 838, 1034, 1054
HpyCH4IV	ACGT	3 cut(s)	16, 90, 1031
HpyCH4V	TGCA	7 cut(s)	280, 625, 758, 763, 936, 1148, 1153
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 652
HpyF3I	CTNAG	4 cut(s)	38, 188, 552, 605
HpySE526I	ACGT	3 cut(s)	16, 90, 1031
Hsp92II	CATG	5 cut(s)	228, 376, 481, 629, 1006
HspAI	GCGC	1 cut(s)	337
Ksp22I	TGATCA	1 cut(s)	717
KspAI	GTTAAC	1 cut(s)	1020
Kzo9I	GATC	3 cut(s)	298, 717, 1078
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	2 cut(s)	346, 479
LweI	GCATC	3 cut(s)	495, 745, 955
MaeI	CTAG	3 cut(s)	206, 422, 1085
MaeII	ACGT	3 cut(s)	16, 90, 1031
MaeIII	GTNAC	3 cut(s)	7, 126, 818
MalI	GATC	3 cut(s)	300, 719, 1080
MbiI	CCGCTC	2 cut(s)	115, 187
MboI	GATC	3 cut(s)	298, 717, 1078
MboII	GAAGA	3 cut(s)	440, 510, 764
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	4 cut(s)	215, 453, 472, 997
Mph1103I	ATGCAT	2 cut(s)	627, 1150
MseI	TTAA	3 cut(s)	615, 1019, 1142
MspI	CCGG	7 cut(s)	5, 246, 296, 319, 406, 441, 1051
MspR9I	CCNGG	5 cut(s)	246, 247, 296, 356, 1052
Mva1269I	GAATGC	1 cut(s)	808
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	2 cut(s)	281, 652
NciI	CCSGG	4 cut(s)	246, 247, 296, 1052
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	3 cut(s)	298, 717, 1078
NlaIII	CATG	5 cut(s)	228, 376, 481, 629, 1006
NlaIV	GGNNCC	5 cut(s)	230, 294, 404, 903, 1066
NmuCI	GTSAC	2 cut(s)	7, 126
NruI	TCGCGA	1 cut(s)	774
NsiI	ATGCAT	2 cut(s)	627, 1150
NspI	RCATGY	1 cut(s)	629
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	2 cut(s)	481, 691
PkrI	GCNGC	2 cut(s)	336, 494
Ppu21I	YACGTR	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	227
PsiI	TTATAA	4 cut(s)	471, 534, 876, 1026
Psp1406I	AACGTT	1 cut(s)	1031
Psp6I	CCWGG	1 cut(s)	354
PspEI	GGTNACC	1 cut(s)	7
PspFI	CCCAGC	2 cut(s)	70, 330
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	5 cut(s)	230, 294, 404, 903, 1066
PspPI	GGNCC	4 cut(s)	229, 254, 274, 292
PsuI	RGATCY	1 cut(s)	298
RruI	TCGCGA	1 cut(s)	774
RsaI	GTAC	2 cut(s)	641, 916
RsaNI	GTAC	2 cut(s)	640, 915
SaqAI	TTAA	3 cut(s)	615, 1019, 1142
SatI	GCNGC	2 cut(s)	335, 493
Sau3AI	GATC	3 cut(s)	298, 717, 1078
Sau96I	GGNCC	4 cut(s)	229, 254, 274, 292
ScrFI	CCNGG	5 cut(s)	246, 247, 296, 356, 1052
SfaNI	GCATC	3 cut(s)	495, 745, 955
SinI	GGWCC	2 cut(s)	229, 292
SmaI	CCCGGG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	215, 453, 472, 997
SsiI	CCGC	7 cut(s)	30, 113, 139, 185, 495, 650, 655
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	3 cut(s)	206, 422, 1085
StyD4I	CCNGG	5 cut(s)	244, 245, 294, 354, 1050
StyI	CCWWGG	1 cut(s)	372
TaiI	ACGT	3 cut(s)	19, 93, 1034
TaqI	TCGA	6 cut(s)	219, 261, 309, 390, 484, 665
TasI	AATT	4 cut(s)	215, 453, 472, 997
TatI	WGTACW	1 cut(s)	914
TfiI	GAWTC	2 cut(s)	481, 691
Tru1I	TTAA	3 cut(s)	615, 1019, 1142
Tru9I	TTAA	3 cut(s)	615, 1019, 1142
TseFI	GTSAC	2 cut(s)	7, 126
TseI	GCWGC	2 cut(s)	334, 492
Tsp45I	GTSAC	2 cut(s)	7, 126
TspDTI	ATGAA	1 cut(s)	689
TspGWI	ACGGA	1 cut(s)	967
TspMI	CCCGGG	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	229, 292
XceI	RCATGY	1 cut(s)	629
XmaI	CCCGGG	1 cut(s)	245
XmiI	GTMKAC	1 cut(s)	809
XspI	CTAG	3 cut(s)	206, 422, 1085
Zsp2I	ATGCAT	2 cut(s)	627, 1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.